Genomic map of Ralstonia phage RS138 (NC_029107)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029107
Definition
Ralstonia phage RS138 DNA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41941
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
65.1
Number of singletons
13
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226544.1 NC_029107_p40 Mu phage uncharacterized protein phrog_24274 unknown function unknown function 1 23126 23560
YP_009226510.1 NC_029107_p6 integrase singleton unknown function unknown function 1 2593 3666
YP_009226554.1 NC_029107_p50 hypothetical protein phrog_3545 unknown function unknown function 1 35857 37587
YP_009226552.1 NC_029107_p48 Tai fiber phrog_6128 unknown function unknown function 1 31032 34673
YP_009226508.1 NC_029107_p4 transcriptional regulator phrog_769 transcriptional repressor transcription regulation 1 1721 2065
YP_009226541.1 NC_029107_p37 Mu-like prophage I protein phrog_328 head maturation protease head and packaging 1 20570 21622
YP_009226509.1 NC_029107_p5 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 2091 2651
YP_009226524.1 NC_029107_p20 hypothetical protein phrog_31206 unknown function unknown function 1 10064 10198
YP_009226516.1 NC_029107_p12 hypothetical protein phrog_2119 unknown function unknown function 1 6515 6973
YP_009226536.1 NC_029107_p32 hypothetical protein phrog_38 terminase large subunit head and packaging 1 14518 16296
YP_009226545.1 NC_029107_p41 hypothetical protein phrog_195 head-tail adaptor connector 1 23567 23983
YP_009226538.1 NC_029107_p34 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 17958 19334
YP_009226506.1 NC_029107_p2 hypothetical protein singleton unknown function unknown function -1 180 791
YP_009226522.1 NC_029107_p18 phage capsid protein phrog_846 unknown function unknown function 1 9016 9522
YP_009226514.1 NC_029107_p10 hypothetical protein phrog_37461 unknown function unknown function 1 5617 5895
YP_009226535.1 NC_029107_p31 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 14025 14525
YP_009226558.1 NC_029107_p54 hypothetical protein phrog_5348 unknown function unknown function 1 40312 40773
YP_009226511.1 NC_029107_p7 integrase phrog_310 transposase integration and excision 1 3425 4840
YP_009226553.1 NC_029107_p49 hypothetical protein phrog_9998 unknown function unknown function 1 34689 35846
YP_009226559.1 NC_029107_p55 hypothetical protein singleton unknown function unknown function 1 41077 41463
YP_009226526.1 NC_029107_p22 hypothetical protein phrog_31206 unknown function unknown function 1 10747 10881
YP_009226529.1 NC_029107_p25 DNA transposition protein phrog_836 late transcriptional activator transcription regulation 1 11721 12164
YP_009226523.1 NC_029107_p19 hypothetical protein singleton unknown function unknown function 1 9532 9969
YP_009226519.1 NC_029107_p15 hypothetical protein singleton unknown function unknown function 1 7492 7830
YP_009226542.1 NC_029107_p38 bacteriophage protein phrog_1731 virion structural protein head and packaging 1 21667 22074
YP_009226547.1 NC_029107_p43 hypothetical protein singleton unknown function unknown function 1 24432 24623
YP_009226532.1 NC_029107_p28 Rz protein phrog_1403 Rz-like spanin lysis 1 12990 13586
YP_009226543.1 NC_029107_p39 head protein phrog_371 major head protein head and packaging 1 22115 23008
YP_009226540.1 NC_029107_p36 integron gene cassette protein singleton unknown function unknown function 1 19967 20242
YP_009226550.1 NC_029107_p46 tail length tape measure protein singleton unknown function unknown function 1 25937 30634
YP_009226549.1 NC_029107_p45 hypothetical protein phrog_7608 unknown function unknown function 1 25434 25790
YP_009226556.1 NC_029107_p52 hypothetical protein phrog_6079 tail protein tail 1 37986 39866
YP_009226533.1 NC_029107_p29 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 13576 13803
YP_009226521.1 NC_029107_p17 hypothetical protein phrog_38050 unknown function unknown function 1 8539 8886
YP_009226525.1 NC_029107_p21 hypothetical protein singleton unknown function unknown function 1 10202 10546
YP_009226555.1 NC_029107_p51 hypothetical protein phrog_3758 virion structural protein head and packaging 1 37584 37982
YP_009226531.1 NC_029107_p27 hypothetical protein phrog_1322 membrane protein moron, auxiliary metabolic gene and host takeover 1 12752 12997
YP_009226551.1 NC_029107_p47 hypothetical protein phrog_4408 unknown function unknown function 1 30631 31035
YP_009226513.1 NC_029107_p9 phage DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 5126 5620
YP_009226517.1 NC_029107_p13 hypothetical protein singleton unknown function unknown function 1 6829 7332
YP_009226507.1 NC_029107_p3 transcriptional regulator phrog_3557 transcriptional regulator transcription regulation -1 1105 1533
YP_009226512.1 NC_029107_p8 phage DNA transposition protein singleton unknown function unknown function 1 4857 5189
YP_009226505.1 NC_029107_p1 hypothetical protein singleton unknown function unknown function -1 15 161
YP_009226515.1 NC_029107_p11 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 6205 6525
YP_009226548.1 NC_029107_p44 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 24663 25412
YP_009226537.1 NC_029107_p33 portal protein phrog_113 portal protein head and packaging 1 16302 17912
YP_009226546.1 NC_029107_p42 hypothetical protein phrog_209 portal protein head and packaging 1 24133 24456
YP_009226518.1 NC_029107_p14 hypothetical protein phrog_35124 unknown function unknown function 1 7332 7481
YP_009226557.1 NC_029107_p53 hypothetical protein phrog_5076 unknown function unknown function 1 39882 40106
YP_009226534.1 NC_029107_p30 hypothetical protein phrog_1103 unknown function unknown function 1 13804 14025
YP_009226560.1 NC_029107_p56 hypothetical protein singleton unknown function unknown function 1 41460 41825
YP_009226527.1 NC_029107_p23 hypothetical protein phrog_5671 unknown function unknown function 1 10885 11322
YP_009226530.1 NC_029107_p26 virion protein phrog_873 endolysin head and packaging 1 12315 12755
YP_009226520.1 NC_029107_p16 hypothetical protein phrog_2161 unknown function unknown function 1 7955 8539
YP_009226528.1 NC_029107_p24 hypothetical protein phrog_286 unknown function unknown function 1 11325 11717
YP_009226539.1 NC_029107_p35 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 19291 19758