Genomic map of Clostridium phage phiCDHM13 (NC_029116)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029116
Definition
Clostridium phage phiCDHM13 complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
33596
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
29.98
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226588.1 NC_029116_p16 hypothetical protein phrog_579 unknown function unknown function 1 12627 12953
YP_009226608.1 NC_029116_p36 hypothetical protein phrog_19640 unknown function unknown function 1 27132 27239
YP_009226591.1 NC_029116_p19 hypothetical protein phrog_521 tail protein tail 1 14423 15040
YP_009226582.1 NC_029116_p10 hypothetical protein phrog_365 tail protein tail 1 7396 7845
YP_009226604.1 NC_029116_p32 ParA protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 21750 22559
YP_009226618.1 NC_029116_p46 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 31195 31662
YP_009226615.1 NC_029116_p43 hypothetical protein phrog_3794 unknown function unknown function 1 29575 29721
YP_009226603.1 NC_029116_p31 hypothetical protein phrog_4741 unknown function unknown function -1 21417 21749
YP_009226596.1 NC_029116_p24 holin protein phrog_1129 holin lysis 1 17582 17839
YP_009226619.1 NC_029116_p47 integrase protein phrog_216 integrase integration and excision 1 31907 32410
YP_009226609.1 NC_029116_p37 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 27279 27653
YP_009226593.1 NC_029116_p21 hypothetical protein phrog_1589 unknown function unknown function 1 15836 17116
YP_009226621.1 NC_029116_p49 endonuclease protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32822 33115
YP_009226599.1 NC_029116_p27 regulatory protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19498 20133
YP_009226579.1 NC_029116_p7 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5412 5870
YP_009226597.1 NC_029116_p25 endolysin protein phrog_435 endolysin lysis 1 17839 18651
YP_009226598.1 NC_029116_p26 hypothetical protein phrog_18831 unknown function unknown function 1 19037 19486
YP_009226587.1 NC_029116_p15 cell wall hydrolase protein phrog_400 tail protein tail 1 11091 12611
YP_009226622.1 NC_029116_p50 hypothetical protein phrog_1066 unknown function unknown function 1 33212 33596
YP_009226578.1 NC_029116_p6 head tail joining protein phrog_25 head closure Hc1 connector 1 5126 5464
YP_009226605.1 NC_029116_p33 exonuclease protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 23122 23844
YP_009226586.1 NC_029116_p14 puative cell wall hydrolase/LysM protein phrog_380 endolysin lysis 1 10213 10851
YP_009226601.1 NC_029116_p29 hypothetical protein phrog_30435 unknown function unknown function 1 20508 20681
YP_009226581.1 NC_029116_p9 tail sheath protein phrog_1480 tail sheath tail 1 6315 7382
YP_009226594.1 NC_029116_p22 hypothetical protein phrog_1243 unknown function unknown function 1 17116 17298
YP_009226600.1 NC_029116_p28 hypothetical protein phrog_27416 unknown function unknown function 1 20210 20524
YP_009226575.1 NC_029116_p3 Clp protease protein phrog_94 head maturation protease head and packaging 1 2826 3563
YP_009226613.1 NC_029116_p41 hypothetical protein phrog_12681 unknown function unknown function 1 28775 29119
YP_009226595.1 NC_029116_p23 hypothetical protein phrog_1193 hemolysin other 1 17335 17565
YP_009226607.1 NC_029116_p35 hypothetical protein phrog_6335 unknown function unknown function 1 26459 26803
YP_009226580.1 NC_029116_p8 hypothetical protein phrog_525 unknown function unknown function 1 5882 6298
YP_009226574.1 NC_029116_p2 portal protein phrog_12 portal protein head and packaging 1 1666 2820
YP_009226611.1 NC_029116_p39 hypothetical protein phrog_4206 unknown function unknown function 1 28077 28511
YP_009226616.1 NC_029116_p44 hypothetical protein phrog_8087 unknown function unknown function 1 29831 30100
YP_009226585.1 NC_029116_p13 tail tape measure protein phrog_991 tail length tape measure protein tail 1 8459 10213
YP_009226617.1 NC_029116_p45 hypothetical protein phrog_5164 unknown function unknown function 1 30119 30379
YP_009226620.1 NC_029116_p48 hypothetical protein phrog_10762 unknown function unknown function 1 32607 32822
YP_009226576.1 NC_029116_p4 capsid protein phrog_10 major head protein head and packaging 1 3556 4824
YP_009226589.1 NC_029116_p17 conserved hypothetical protein (XkdS-like) phrog_120 baseplate wedge subunit tail 1 12953 13381
YP_009226612.1 NC_029116_p40 hypothetical protein phrog_2065 unknown function unknown function 1 28609 28770
YP_009226583.1 NC_029116_p11 conserved hypothetical protein (XkdN-like) phrog_4976 tail assembly chaperone tail 1 7892 8275
YP_009226584.1 NC_029116_p12 hypothetical protein phrog_10264 unknown function unknown function 1 8293 8466
YP_009226573.1 NC_029116_p1 terminase large subunit protein phrog_9 terminase large subunit head and packaging 1 1 1650
YP_009226590.1 NC_029116_p18 baseplate-J protein phrog_6 baseplate wedge subunit tail 1 13356 14426
YP_009226614.1 NC_029116_p42 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29122 29517
YP_009226592.1 NC_029116_p20 tail fiber protein phrog_2137 tail fiber protein tail 1 15041 15820
YP_009226610.1 NC_029116_p38 hypothetical protein phrog_6407 unknown function unknown function 1 27829 28011
YP_009226606.1 NC_029116_p34 DNase/helicase protein phrog_5173 unknown function unknown function 1 24291 26444
YP_009226577.1 NC_029116_p5 head tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 4834 5055
YP_009226602.1 NC_029116_p30 hypothetical protein phrog_4021 unknown function unknown function -1 20992 21273