Genomic map of Staphylococcus phage SPbeta-like (NC_029119)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029119
Definition
Staphylococcus phage SPbeta-like, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
127726
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
156
%GC
30.53
Number of singletons
32
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226736.1 NC_029119_p60 GDSL-like lipase/acylhydrolase phrog_13015 virion structural protein head and packaging 1 68830 71223
YP_009226708.1 NC_029119_p32 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 29167 30351
YP_009226686.1 NC_029119_p10 hypothetical protein phrog_9925 unknown function unknown function -1 9514 9762
YP_009226784.1 NC_029119_p108 YolD-like protein phrog_3352 unknown function unknown function 1 105071 105475
YP_009226779.1 NC_029119_p103 DNA polymerase III subunit alpha phrog_12219 DNA polymerase DNA, RNA and nucleotide metabolism -1 99208 101694
YP_009226775.1 NC_029119_p99 hypothetical protein singleton unknown function unknown function -1 96479 96868
YP_009226730.1 NC_029119_p54 hypothetical protein phrog_19478 unknown function unknown function 1 64180 64554
YP_009226744.1 NC_029119_p68 gram positive anchor phrog_29080 unknown function unknown function -1 76833 77438
YP_009226734.1 NC_029119_p58 hypothetical protein phrog_11953 exonuclease DNA, RNA and nucleotide metabolism 1 67915 68427
YP_009226683.1 NC_029119_p7 hypothetical protein phrog_2367 unknown function unknown function -1 7309 8268
YP_009226827.1 NC_029119_p151 ribosomal-protein-alanine N-acetyltransferase phrog_21214 acetyltransferase other -1 123643 124047
YP_009226738.1 NC_029119_p62 hypothetical protein phrog_4869 unknown function unknown function -1 71819 72133
YP_009226695.1 NC_029119_p19 hypothetical protein phrog_37406 unknown function unknown function -1 16916 17239
YP_009226790.1 NC_029119_p114 hypothetical protein phrog_3093 unknown function unknown function -1 108656 108925
YP_009226735.1 NC_029119_p59 lysis protein phrog_263 holin lysis 1 68449 68778
YP_009226726.1 NC_029119_p50 site-specific tyrosine recombinase XerC phrog_1 integrase integration and excision 1 44582 45598
YP_009226688.1 NC_029119_p12 hypothetical protein phrog_5732 unknown function unknown function -1 10938 12221
YP_009226811.1 NC_029119_p135 hypothetical protein phrog_5699 unknown function unknown function -1 115950 116189
YP_009226694.1 NC_029119_p18 hypothetical protein phrog_30692 unknown function unknown function -1 16560 16823
YP_009226762.1 NC_029119_p86 hypothetical protein singleton unknown function unknown function -1 91577 91807
YP_009226802.1 NC_029119_p126 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation -1 113660 113815
YP_009226754.1 NC_029119_p78 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 84665 85489
YP_009226773.1 NC_029119_p97 hypothetical protein singleton unknown function unknown function -1 95914 96180
YP_009226813.1 NC_029119_p137 thermonuclease precursor phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 116441 116788
YP_009226759.1 NC_029119_p83 hypothetical protein singleton unknown function unknown function -1 89634 90335
YP_009226747.1 NC_029119_p71 endodeoxyribonuclease RusA phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 80144 80737
YP_009226757.1 NC_029119_p81 NrdI-like protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover -1 89020 89433
YP_009226807.1 NC_029119_p131 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 114961 115149
YP_009226778.1 NC_029119_p102 hypothetical protein singleton unknown function unknown function -1 98716 99096
YP_009226681.1 NC_029119_p5 hypothetical protein phrog_4680 unknown function unknown function -1 5622 6146
YP_009226769.1 NC_029119_p93 hypothetical protein singleton unknown function unknown function -1 94891 95073
YP_009226764.1 NC_029119_p88 hypothetical protein singleton unknown function unknown function -1 92006 92359
YP_009226831.1 NC_029119_p155 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 125924 126880
YP_009226719.1 NC_029119_p43 hypothetical protein phrog_5523 unknown function unknown function 1 40247 40564
YP_009226806.1 NC_029119_p130 hypothetical protein phrog_9739 unknown function unknown function -1 114477 114959
YP_009226760.1 NC_029119_p84 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 90347 90856
YP_009226724.1 NC_029119_p48 hypothetical protein phrog_7383 unknown function unknown function 1 43536 44093
YP_009226812.1 NC_029119_p136 hypothetical protein phrog_13064 unknown function unknown function -1 116211 116435
YP_009226832.1 NC_029119_p156 integrase core domain protein phrog_157 transposase integration and excision 1 126994 127668
YP_009226699.1 NC_029119_p23 hypothetical protein singleton unknown function unknown function -1 18956 19171
YP_009226814.1 NC_029119_p138 YopX protein phrog_98 unknown function unknown function -1 116785 117195
YP_009226737.1 NC_029119_p61 integrase core domain protein phrog_157 transposase integration and excision -1 71295 71771
YP_009226716.1 NC_029119_p40 hypothetical protein phrog_22779 unknown function unknown function 1 38562 39179
YP_009226740.1 NC_029119_p64 N-acetylmuramoyl-L-alanine amidase phrog_489 endolysin lysis 1 72571 74073
YP_009226758.1 NC_029119_p82 hypothetical protein singleton unknown function unknown function -1 89463 89615
YP_009226696.1 NC_029119_p20 antirestriction protein phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 17283 17942
YP_009226816.1 NC_029119_p140 hypothetical protein phrog_467 unknown function unknown function -1 117501 117875
YP_009226689.1 NC_029119_p13 site-specific tyrosine recombinase XerC phrog_1 integrase integration and excision -1 12529 13572
YP_009226752.1 NC_029119_p76 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 82421 83023
YP_009226680.1 NC_029119_p4 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 4068 5600
YP_009226746.1 NC_029119_p70 Myb-like DNA-binding domain protein singleton unknown function unknown function -1 79361 79942
YP_009226797.1 NC_029119_p121 diadenosine tetraphosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 111669 112394
YP_009226721.1 NC_029119_p45 hypothetical protein phrog_9587 unknown function unknown function 1 41223 41744
YP_009226678.1 NC_029119_p2 single-strand DNA-specific exonuclease YorK phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 1170 2936
YP_009226824.1 NC_029119_p148 transposase mutator family phrog_2331 transposase integration and excision 1 120902 121678
YP_009226690.1 NC_029119_p14 hypothetical protein phrog_13524 unknown function unknown function -1 14256 14684
YP_009226774.1 NC_029119_p98 hypothetical protein singleton unknown function unknown function -1 96192 96365
YP_009226750.1 NC_029119_p74 hypothetical protein singleton unknown function unknown function -1 81877 82116
YP_009226682.1 NC_029119_p6 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 6217 7185
YP_009226800.1 NC_029119_p124 hypothetical protein phrog_3784 unknown function unknown function -1 112804 113346
YP_009226743.1 NC_029119_p67 hypothetical protein phrog_27771 unknown function unknown function -1 75044 76690
YP_009226732.1 NC_029119_p56 hypothetical protein phrog_21440 unknown function unknown function 1 64756 67425
YP_009226765.1 NC_029119_p89 modification methylase HhaI phrog_116 DNA methyltransferase other -1 92392 93390
YP_009226748.1 NC_029119_p72 hypothetical protein singleton unknown function unknown function -1 80721 81116
YP_009226810.1 NC_029119_p134 hypothetical protein phrog_419 unknown function unknown function -1 115652 115927
YP_009226711.1 NC_029119_p35 hypothetical protein phrog_26582 unknown function unknown function 1 33629 34720
YP_009226702.1 NC_029119_p26 hypothetical protein phrog_17854 unknown function unknown function -1 21414 21671
YP_009226756.1 NC_029119_p80 hypothetical protein singleton unknown function unknown function -1 88574 89020
YP_009226787.1 NC_029119_p111 hypothetical protein phrog_19771 unknown function unknown function -1 106470 107192
YP_009226777.1 NC_029119_p101 hypothetical protein singleton unknown function unknown function -1 98264 98578
YP_009226714.1 NC_029119_p38 hypothetical protein phrog_4147 unknown function unknown function 1 37700 38140
YP_009226679.1 NC_029119_p3 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 2939 4051
YP_009226776.1 NC_029119_p100 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 96956 98254
YP_009226782.1 NC_029119_p106 hypothetical protein singleton unknown function unknown function -1 103618 103992
YP_009226770.1 NC_029119_p94 hypothetical protein singleton unknown function unknown function -1 95073 95324
YP_009226822.1 NC_029119_p146 integrase core domain protein phrog_157 transposase integration and excision 1 119687 120361
YP_009226705.1 NC_029119_p29 hypothetical protein phrog_5767 sigma factor transcription regulation 1 26862 28358
YP_009226828.1 NC_029119_p152 transposase mutator family phrog_11688 transposase integration and excision -1 124092 124514
YP_009226825.1 NC_029119_p149 transposase mutator family phrog_11688 transposase integration and excision 1 121651 122073
YP_009226717.1 NC_029119_p41 hypothetical protein phrog_13983 unknown function unknown function 1 39254 39805
YP_009226745.1 NC_029119_p69 recombinase phrog_95 integrase integration and excision -1 77833 79371
YP_009226704.1 NC_029119_p28 ATP-dependent RecD-like DNA helicase phrog_4412 exonuclease V DNA, RNA and nucleotide metabolism -1 24441 26726
YP_009226796.1 NC_029119_p120 hypothetical protein phrog_14456 unknown function unknown function -1 111359 111679
YP_009226761.1 NC_029119_p85 hypothetical protein singleton unknown function unknown function -1 91116 91577
YP_009226826.1 NC_029119_p150 bifunctional AAC/APH phrog_29599 unknown function unknown function -1 122203 123642
YP_009226687.1 NC_029119_p11 hypothetical protein phrog_5830 integrase integration and excision -1 9922 10926
YP_009226791.1 NC_029119_p115 hypothetical protein singleton unknown function unknown function -1 108909 109124
YP_009226685.1 NC_029119_p9 hypothetical protein phrog_9433 unknown function unknown function -1 9010 9498
YP_009226801.1 NC_029119_p125 hypothetical protein phrog_12404 unknown function unknown function -1 113362 113634
YP_009226715.1 NC_029119_p39 hypothetical protein phrog_27131 unknown function unknown function 1 38179 38538
YP_009226799.1 NC_029119_p123 hypothetical protein phrog_16369 unknown function unknown function -1 112635 112811
YP_009226763.1 NC_029119_p87 hypothetical protein singleton unknown function unknown function -1 91821 92003
YP_009226785.1 NC_029119_p109 hypothetical protein singleton unknown function unknown function 1 105558 105692
YP_009226729.1 NC_029119_p53 hypothetical protein phrog_16381 unknown function unknown function 1 56132 64177
YP_009226780.1 NC_029119_p104 hypothetical protein singleton unknown function unknown function -1 101840 101935
YP_009226792.1 NC_029119_p116 Fic/DOC family protein phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover -1 109403 109798
YP_009226805.1 NC_029119_p129 hypothetical protein phrog_14559 unknown function unknown function -1 114282 114461
YP_009226720.1 NC_029119_p44 hypothetical protein phrog_5251 unknown function unknown function 1 40568 41233
YP_009226753.1 NC_029119_p77 ribonucleoside-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 83051 84073
YP_009226804.1 NC_029119_p128 hypothetical protein phrog_9885 unknown function unknown function -1 114112 114297
YP_009226783.1 NC_029119_p107 hypothetical protein singleton unknown function unknown function 1 104159 104719
YP_009226707.1 NC_029119_p31 YonK protein phrog_8651 unknown function unknown function 1 28973 29158
YP_009226781.1 NC_029119_p105 DNA polymerase III subunit alpha phrog_7513 unknown function unknown function -1 102157 103605
YP_009226692.1 NC_029119_p16 hypothetical protein phrog_22831 unknown function unknown function -1 15283 15735
YP_009226789.1 NC_029119_p113 hypothetical protein phrog_13203 unknown function unknown function -1 108105 108599
YP_009226710.1 NC_029119_p34 hypothetical protein phrog_15503 unknown function unknown function 1 32923 33624
YP_009226818.1 NC_029119_p142 hypothetical protein singleton unknown function unknown function -1 117943 118074
YP_009226819.1 NC_029119_p143 hypothetical protein phrog_12021 unknown function unknown function -1 118101 118376
YP_009226742.1 NC_029119_p66 hypothetical protein phrog_23230 unknown function unknown function -1 74729 74905
YP_009226712.1 NC_029119_p36 hypothetical protein phrog_2739 portal protein head and packaging 1 34738 36300
YP_009226749.1 NC_029119_p73 phosphoribosyl-ATP pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other -1 81118 81864
YP_009226697.1 NC_029119_p21 hypothetical protein phrog_28843 unknown function unknown function -1 18095 18484
YP_009226793.1 NC_029119_p117 hypothetical protein phrog_4324 unknown function unknown function -1 109798 110028
YP_009226766.1 NC_029119_p90 tRNA (cmo5U34)-methyltransferase phrog_4752 tRNA methyltransferase other -1 93405 94091
YP_009226798.1 NC_029119_p122 hypothetical protein phrog_14223 unknown function unknown function -1 112394 112615
YP_009226830.1 NC_029119_p154 dihydrofolate reductase type 1 phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 125397 125882
YP_009226698.1 NC_029119_p22 hypothetical protein phrog_37887 unknown function unknown function -1 18621 18881
YP_009226823.1 NC_029119_p147 DegV domain-containing protein singleton unknown function unknown function -1 120393 120839
YP_009226803.1 NC_029119_p127 hypothetical protein phrog_14162 unknown function unknown function -1 113812 114096
YP_009226713.1 NC_029119_p37 hypothetical protein phrog_3313 unknown function unknown function 1 36293 37672
YP_009226809.1 NC_029119_p133 hypothetical protein phrog_7966 unknown function unknown function -1 115364 115630
YP_009226703.1 NC_029119_p27 hypothetical protein phrog_18421 unknown function unknown function -1 23530 24405
YP_009226794.1 NC_029119_p118 hypothetical protein phrog_547 phosphoesterase other -1 110191 110709
YP_009226788.1 NC_029119_p112 calcineurin-like phosphoesterase superfamily domain protein phrog_1649 metallo-phosphoesterase other -1 107301 108101
YP_009226741.1 NC_029119_p65 hypothetical protein singleton unknown function unknown function -1 74149 74349
YP_009226723.1 NC_029119_p47 hypothetical protein phrog_2729 virion structural protein head and packaging 1 42661 43452
YP_009226829.1 NC_029119_p153 transposase mutator family phrog_2331 transposase integration and excision -1 124487 125263
YP_009226693.1 NC_029119_p17 DNA polymerase III subunit beta phrog_6615 DNA polymerase DNA, RNA and nucleotide metabolism -1 15851 16531
YP_009226701.1 NC_029119_p25 hypothetical protein phrog_28052 unknown function unknown function -1 19351 19635
YP_009226718.1 NC_029119_p42 hypothetical protein phrog_3853 unknown function unknown function 1 39823 40257
YP_009226684.1 NC_029119_p8 hypothetical protein phrog_9524 unknown function unknown function -1 8312 8992
YP_009226767.1 NC_029119_p91 hypothetical protein singleton unknown function unknown function -1 94081 94272
YP_009226725.1 NC_029119_p49 hypothetical protein phrog_16506 unknown function unknown function 1 44093 44566
YP_009226733.1 NC_029119_p57 hypothetical protein phrog_2968 tail protein tail 1 67532 67933
YP_009226728.1 NC_029119_p52 hypothetical protein phrog_15588 unknown function unknown function 1 53990 56071
YP_009226691.1 NC_029119_p15 hypothetical protein phrog_13420 unknown function unknown function -1 14762 15283
YP_009226722.1 NC_029119_p46 hypothetical protein phrog_4051 unknown function unknown function 1 41750 42622
YP_009226731.1 NC_029119_p55 hypothetical protein phrog_20869 unknown function unknown function 1 64547 64714
YP_009226786.1 NC_029119_p110 hypothetical protein singleton unknown function unknown function -1 105723 106364
YP_009226817.1 NC_029119_p141 hypothetical protein singleton unknown function unknown function -1 117815 117925
YP_009226795.1 NC_029119_p119 hypothetical protein phrog_13371 unknown function unknown function -1 110709 111359
YP_009226709.1 NC_029119_p33 hypothetical protein phrog_3314 unknown function unknown function 1 32046 32930
YP_009226677.1 NC_029119_p1 ribonuclease Z phrog_392 metal-dependent hydrolase other -1 240 977
YP_009226815.1 NC_029119_p139 hypothetical protein phrog_7797 unknown function unknown function -1 117235 117498
YP_009226706.1 NC_029119_p30 DNA-binding protein HU 1 phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 28618 28947
YP_009226768.1 NC_029119_p92 nucleoside 2-deoxyribosyltransferase phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 94265 94876
YP_009226820.1 NC_029119_p144 hypothetical protein phrog_12772 unknown function unknown function -1 118389 118586
YP_009226700.1 NC_029119_p24 hypothetical protein singleton unknown function unknown function -1 19223 19336
YP_009226808.1 NC_029119_p132 hypothetical protein phrog_13049 unknown function unknown function -1 115156 115359
YP_009226739.1 NC_029119_p63 hypothetical protein phrog_151 transposase integration and excision -1 72118 72432
YP_009226821.1 NC_029119_p145 hypothetical protein phrog_12834 unknown function unknown function -1 118597 119643
YP_009226772.1 NC_029119_p96 hypothetical protein singleton unknown function unknown function -1 95634 95921
YP_009226751.1 NC_029119_p75 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 82132 82380
YP_009226727.1 NC_029119_p51 glycyl-glycine endopeptidase ALE-1 precursor phrog_4211 tail length tape measure protein tail 1 45695 53968
YP_009226771.1 NC_029119_p95 hypothetical protein singleton unknown function unknown function -1 95330 95653
YP_009226755.1 NC_029119_p79 ribonucleoside-diphosphate reductase subunit alpha 2 phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 85643 88552