Genomic map of Shigella phage 75/02 Stx (NC_029120)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029120
Definition
Shigella phage 75/02 Stx, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Diegovirus.
DB of origin
REFSEQ
Length
60875
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
49.11
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226901.1 NC_029120_p69 hypothetical protein phrog_3658 unknown function unknown function 1 56490 56672
YP_009226902.1 NC_029120_p70 EaA protein phrog_60 unknown function unknown function -1 56758 57261
YP_009226843.1 NC_029120_p11 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 8491 9261
YP_009226870.1 NC_029120_p38 hypothetical protein phrog_311 unknown function unknown function 1 24910 25182
YP_009226878.1 NC_029120_p46 DNA packaging protein phrog_370 terminase small subunit head and packaging 1 28210 29016
YP_009226866.1 NC_029120_p34 shiga toxin I subunit B precursor phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 21872 22141
YP_009226906.1 NC_029120_p74 zinc-finger containing protein phrog_54 DksA-like zinc-finger protein other -1 58993 59214
YP_009226848.1 NC_029120_p16 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 11362 12102
YP_009226834.1 NC_029120_p2 hypothetical protein phrog_285 unknown function unknown function -1 1477 1728
YP_009226899.1 NC_029120_p67 hypothetical protein phrog_601 unknown function unknown function 1 46650 47915
YP_009226890.1 NC_029120_p58 tail fiber protein phrog_496 tail fiber protein tail 1 41339 42607
YP_009226879.1 NC_029120_p47 hypothetical protein phrog_2 terminase large subunit head and packaging 1 28997 30703
YP_009226893.1 NC_029120_p61 attachment invasion locus protein precursor phrog_108 Lom outer membrane protein other 1 43614 44348
YP_009226835.1 NC_029120_p3 integration-recombination exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 1776 2456
YP_009226892.1 NC_029120_p60 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 42906 43523
YP_009226895.1 NC_029120_p63 hypothetical protein phrog_610 unknown function unknown function 1 44778 45179
YP_009226837.1 NC_029120_p5 host nuclease inhibitor Gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 3244 3540
YP_009226842.1 NC_029120_p10 hypothetical protein phrog_2539 unknown function unknown function -1 7107 7820
YP_009226859.1 NC_029120_p27 DNA recombination protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 17776 18186
YP_009226863.1 NC_029120_p31 antitermination protein Q phrog_79 anti-termination protein Q-like transcription regulation 1 19234 19614
YP_009226856.1 NC_029120_p24 hypothetical protein phrog_19308 unknown function unknown function 1 15206 15631
YP_009226860.1 NC_029120_p28 hypothetical protein phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18395 18688
YP_009226904.1 NC_029120_p72 hypothetical protein phrog_250 unknown function unknown function -1 57775 58725
YP_009226891.1 NC_029120_p59 outer membrane protein phrog_557 outer membrane protein other 1 42622 42900
YP_009226877.1 NC_029120_p45 hypothetical protein singleton unknown function unknown function 1 27906 28154
YP_009226884.1 NC_029120_p52 hypothetical protein phrog_482 unknown function unknown function 1 35718 36206
YP_009226862.1 NC_029120_p30 NinH phrog_268 unknown function unknown function 1 19047 19241
YP_009226864.1 NC_029120_p32 hypothetical protein phrog_34160 unknown function unknown function 1 19747 20340
YP_009226872.1 NC_029120_p40 lysozyme phrog_7 endolysin lysis 1 25479 26012
YP_009226898.1 NC_029120_p66 hypothetical protein phrog_594 unknown function unknown function 1 46388 46639
YP_009226865.1 NC_029120_p33 shiga toxin A-chain precursor phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 20915 21862
YP_009226852.1 NC_029120_p20 hypothetical protein phrog_8371 unknown function unknown function 1 14050 14295
YP_009226880.1 NC_029120_p48 hypothetical protein phrog_156 portal protein head and packaging 1 30703 32847
YP_009226847.1 NC_029120_p15 primosomal protein I phrog_1701 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 10267 11355
YP_009226900.1 NC_029120_p68 hypothetical protein phrog_616 unknown function unknown function 1 47985 56366
YP_009226896.1 NC_029120_p64 hypothetical protein phrog_611 unknown function unknown function 1 45273 45929
YP_009226871.1 NC_029120_p39 holin lysis protein S phrog_20 holin lysis 1 25259 25474
YP_009226883.1 NC_029120_p51 hypothetical protein phrog_486 virion structural protein head and packaging 1 35306 35695
YP_009226897.1 NC_029120_p65 hypothetical protein phrog_596 unknown function unknown function 1 45932 46378
YP_009226845.1 NC_029120_p13 cII protein phrog_191 CII-like transcriptional activator transcription regulation 1 9717 10013
YP_009226846.1 NC_029120_p14 hypothetical protein phrog_2751 unknown function unknown function 1 10028 10246
YP_009226875.1 NC_029120_p43 outer membrane lytic protein Rz phrog_13 Rz-like spanin lysis 1 27013 27477
YP_009226868.1 NC_029120_p36 hypothetical protein phrog_9558 unknown function unknown function 1 24552 24677
YP_009226851.1 NC_029120_p19 hypothetical protein phrog_1305 DNA binding protein DNA, RNA and nucleotide metabolism -1 13377 14051
YP_009226887.1 NC_029120_p55 tail fiber protein phrog_366 tail fiber protein tail 1 37400 38884
YP_009226857.1 NC_029120_p25 hypothetical protein phrog_21161 unknown function unknown function 1 15643 16314
YP_009226858.1 NC_029120_p26 antirepressor protein phrog_377 anti-repressor Ant transcription regulation 1 17053 17721
YP_009226861.1 NC_029120_p29 crossover junction endodeoxyribonuclease rusA phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 18685 19047
YP_009226886.1 NC_029120_p54 hypothetical protein phrog_399 structural protein head and packaging 1 36753 37403
YP_009226867.1 NC_029120_p35 esterase phrog_143 unknown function unknown function 1 22618 24555
YP_009226889.1 NC_029120_p57 hypothetical protein phrog_511 internal virion protein head and packaging 1 39651 41342
YP_009226873.1 NC_029120_p41 lysozyme-like domain protein phrog_30041 unknown function unknown function 1 25861 26097
YP_009226844.1 NC_029120_p12 hypothetical protein phrog_35 transcriptional repressor transcription regulation 1 9334 9573
YP_009226855.1 NC_029120_p23 hypothetical protein phrog_29617 unknown function unknown function 1 14891 15082
YP_009226908.1 NC_029120_p76 antirepressor protein phrog_6904 unknown function unknown function -1 60135 60422
YP_009226885.1 NC_029120_p53 hypothetical protein phrog_437 virion structural protein head and packaging 1 36190 36753
YP_009226894.1 NC_029120_p62 hypothetical protein phrog_251 MokW-like host killing moron, auxiliary metabolic gene and host takeover 1 44581 44721
YP_009226854.1 NC_029120_p22 hypothetical protein phrog_2523 unknown function unknown function -1 14648 14911
YP_009226840.1 NC_029120_p8 Kil protein phrog_294 Kil protein for bacterial septation inhibition other -1 6166 6387
YP_009226849.1 NC_029120_p17 hypothetical protein phrog_630 unknown function unknown function 1 12128 12898
YP_009226836.1 NC_029120_p4 recombinational DNA repair protein RecT phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2453 3238
YP_009226881.1 NC_029120_p49 hypothetical protein phrog_479 unknown function unknown function 1 33005 34012
YP_009226888.1 NC_029120_p56 tail fiber adhesine phrog_1121 tail fiber adhesin tail 1 38971 39483
YP_009226833.1 NC_029120_p1 integrase phrog_1 integrase integration and excision -1 52 1215
YP_009226839.1 NC_029120_p7 hypothetical protein phrog_2016 unknown function unknown function -1 5694 6080
YP_009226876.1 NC_029120_p44 lipoprotein Bor phrog_260 Bor-like outer membrane protein other -1 27509 27802
YP_009226882.1 NC_029120_p50 hypothetical protein phrog_334 major head protein head and packaging 1 34036 35250
YP_009226869.1 NC_029120_p37 hypothetical protein phrog_494 unknown function unknown function 1 24690 24869
YP_009226907.1 NC_029120_p75 antirepressor protein phrog_377 anti-repressor Ant transcription regulation -1 59262 59885
YP_009226841.1 NC_029120_p9 hypothetical protein phrog_2982 unknown function unknown function -1 6719 7075
YP_009226850.1 NC_029120_p18 LygF phrog_142 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 1 12913 13344
YP_009226905.1 NC_029120_p73 hypothetical protein phrog_667 unknown function unknown function -1 58712 58996
YP_009226853.1 NC_029120_p21 helix-turn-helix family protein phrog_1373 transcriptional regulator transcription regulation -1 14350 14658
YP_009226874.1 NC_029120_p42 antirepressor protein phrog_524 anti-repressor Ant transcription regulation 1 26287 26856
YP_009226838.1 NC_029120_p6 exodeoxyribonuclease VIII phrog_607 exonuclease VII DNA, RNA and nucleotide metabolism -1 3537 5585
YP_009226903.1 NC_029120_p71 hypothetical protein phrog_631 unknown function unknown function -1 57258 57773