| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030652 |
Definition |
Staphylococcus phage 80, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
42140 |
Host Name |
Staphylococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
35.56 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009268673.1 | NC_030652_p30 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 13981 | 14217 |
| YP_009268657.1 | NC_030652_p14 | conserved SSB | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6681 | 7235 |
| YP_009268669.1 | NC_030652_p26 | conserved protein gp26 | phrog_742 | acetyltransferase | other | 1 | 12557 | 12922 |
| YP_009268645.1 | NC_030652_p2 | hypothetical protein | phrog_4037 | unknown function | unknown function | -1 | 1294 | 1794 |
| YP_009268679.1 | NC_030652_p36 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 18223 | 19185 |
| YP_009268651.1 | NC_030652_p8 | hypothetical protein | phrog_5920 | unknown function | unknown function | 1 | 4277 | 4486 |
| YP_009268694.1 | NC_030652_p51 | minor tail protein | phrog_257 | minor tail protein | tail | 1 | 31982 | 33805 |
| YP_009268681.1 | NC_030652_p38 | major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 19819 | 20778 |
| YP_009268703.1 | NC_030652_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41082 | 41312 |
| YP_009268684.1 | NC_030652_p41 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 21428 | 21763 |
| YP_009268652.1 | NC_030652_p9 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 4500 | 4661 |
| YP_009268690.1 | NC_030652_p47 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 24081 | 27224 |
| YP_009268676.1 | NC_030652_p33 | COG3728 phage terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 15139 | 15633 |
| YP_009268685.1 | NC_030652_p42 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21750 | 22163 |
| YP_009268695.1 | NC_030652_p52 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 33805 | 34182 |
| YP_009268653.1 | NC_030652_p10 | hypothetical protein | phrog_983 | unknown function | unknown function | 1 | 4756 | 5037 |
| YP_009268701.1 | NC_030652_p58 | holin | phrog_962 | holin | lysis | 1 | 38423 | 38860 |
| YP_009268664.1 | NC_030652_p21 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 10905 | 11330 |
| YP_009268698.1 | NC_030652_p55 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 34842 | 36716 |
| YP_009268675.1 | NC_030652_p32 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 14384 | 14785 |
| YP_009268666.1 | NC_030652_p23 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 11736 | 11921 |
| YP_009268704.1 | NC_030652_p61 | hypothetical protein | phrog_7610 | unknown function | unknown function | 1 | 41319 | 42056 |
| YP_009268674.1 | NC_030652_p31 | RinB int gene activator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 14210 | 14383 |
| YP_009268662.1 | NC_030652_p19 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 10500 | 10661 |
| YP_009268650.1 | NC_030652_p7 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 3527 | 4252 |
| YP_009268647.1 | NC_030652_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2310 | 2768 |
| YP_009268683.1 | NC_030652_p40 | hypothetical protein | phrog_1161 | head-tail adaptor | connector | 1 | 21121 | 21435 |
| YP_009268677.1 | NC_030652_p34 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15626 | 16834 |
| YP_009268661.1 | NC_030652_p18 | conserved DnaC-like protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9727 | 10506 |
| YP_009268680.1 | NC_030652_p37 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19283 | 19807 |
| YP_009268660.1 | NC_030652_p17 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 8947 | 9717 |
| YP_009268644.1 | NC_030652_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 25 | 1230 |
| YP_009268668.1 | NC_030652_p25 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12294 | 12542 |
| YP_009268654.1 | NC_030652_p11 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 5062 | 5322 |
| YP_009268656.1 | NC_030652_p13 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5872 | 6651 |
| YP_009268663.1 | NC_030652_p20 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 10674 | 10895 |
| YP_009268667.1 | NC_030652_p24 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 11922 | 12293 |
| YP_009268691.1 | NC_030652_p48 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 27239 | 28174 |
| YP_009268686.1 | NC_030652_p43 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 22176 | 22613 |
| YP_009268689.1 | NC_030652_p46 | conserved hypothetical tail assembly protein | phrog_183 | tail chaperone protein | tail | 1 | 23222 | 23716 |
| YP_009268649.1 | NC_030652_p6 | Cro/CI family transcription regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3279 | 3488 |
| YP_009268655.1 | NC_030652_p12 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5335 | 5871 |
| YP_009268665.1 | NC_030652_p22 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11327 | 11731 |
| YP_009268696.1 | NC_030652_p53 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 34183 | 34365 |
| YP_009268658.1 | NC_030652_p15 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 7248 | 7919 |
| YP_009268700.1 | NC_030652_p57 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 37972 | 38367 |
| YP_009268648.1 | NC_030652_p5 | Cro/CI family transcription regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2838 | 3116 |
| YP_009268693.1 | NC_030652_p50 | minor tail protein | phrog_287 | minor tail protein | tail | 1 | 30084 | 31982 |
| YP_009268672.1 | NC_030652_p29 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 13720 | 13956 |
| YP_009268678.1 | NC_030652_p35 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 16848 | 18266 |
| YP_009268670.1 | NC_030652_p27 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 12915 | 13163 |
| YP_009268692.1 | NC_030652_p49 | minor tail protein | phrog_663 | minor head protein | head and packaging | 1 | 28185 | 30071 |
| YP_009268688.1 | NC_030652_p45 | tail assembly protein | phrog_31021 | tail assembly chaperone | tail | 1 | 23222 | 24078 |
| YP_009268671.1 | NC_030652_p28 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 13156 | 13683 |
| YP_009268697.1 | NC_030652_p54 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 34406 | 34705 |
| YP_009268682.1 | NC_030652_p39 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 20795 | 21121 |
| YP_009268646.1 | NC_030652_p3 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 1798 | 2289 |
| YP_009268659.1 | NC_030652_p16 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 8025 | 8882 |
| YP_009268699.1 | NC_030652_p56 | tail fiber | phrog_1125 | tail fiber protein | tail | 1 | 36729 | 37967 |
| YP_009268702.1 | NC_030652_p59 | endolysin | phrog_635 | endolysin | lysis | 1 | 38841 | 40286 |
| YP_009268687.1 | NC_030652_p44 | major tail protein | phrog_238 | major tail protein | tail | 1 | 22600 | 23160 |