Genomic map of Staphylococcus virus 80 (NC_030652)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030652
Definition
Staphylococcus phage 80, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
42140
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
35.56
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009268673.1 NC_030652_p30 hypothetical protein phrog_555 unknown function unknown function 1 13981 14217
YP_009268657.1 NC_030652_p14 conserved SSB phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6681 7235
YP_009268669.1 NC_030652_p26 conserved protein gp26 phrog_742 acetyltransferase other 1 12557 12922
YP_009268645.1 NC_030652_p2 hypothetical protein phrog_4037 unknown function unknown function -1 1294 1794
YP_009268679.1 NC_030652_p36 head morphogenesis protein phrog_115 minor head protein head and packaging 1 18223 19185
YP_009268651.1 NC_030652_p8 hypothetical protein phrog_5920 unknown function unknown function 1 4277 4486
YP_009268694.1 NC_030652_p51 minor tail protein phrog_257 minor tail protein tail 1 31982 33805
YP_009268681.1 NC_030652_p38 major capsid protein phrog_422 major head protein head and packaging 1 19819 20778
YP_009268703.1 NC_030652_p60 hypothetical protein singleton unknown function unknown function 1 41082 41312
YP_009268684.1 NC_030652_p41 hypothetical protein phrog_25 head closure Hc1 connector 1 21428 21763
YP_009268652.1 NC_030652_p9 hypothetical protein phrog_369 unknown function unknown function 1 4500 4661
YP_009268690.1 NC_030652_p47 tape measure protein phrog_58 tail length tape measure protein tail 1 24081 27224
YP_009268676.1 NC_030652_p33 COG3728 phage terminase small subunit phrog_1595 terminase small subunit head and packaging 1 15139 15633
YP_009268685.1 NC_030652_p42 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 21750 22163
YP_009268695.1 NC_030652_p52 hypothetical protein phrog_300 tail fiber protein tail 1 33805 34182
YP_009268653.1 NC_030652_p10 hypothetical protein phrog_983 unknown function unknown function 1 4756 5037
YP_009268701.1 NC_030652_p58 holin phrog_962 holin lysis 1 38423 38860
YP_009268664.1 NC_030652_p21 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 10905 11330
YP_009268698.1 NC_030652_p55 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 34842 36716
YP_009268675.1 NC_030652_p32 hypothetical protein phrog_1058 unknown function unknown function 1 14384 14785
YP_009268666.1 NC_030652_p23 hypothetical protein phrog_299 unknown function unknown function 1 11736 11921
YP_009268704.1 NC_030652_p61 hypothetical protein phrog_7610 unknown function unknown function 1 41319 42056
YP_009268674.1 NC_030652_p31 RinB int gene activator phrog_152 RinB-like transcriptional activator transcription regulation 1 14210 14383
YP_009268662.1 NC_030652_p19 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 10500 10661
YP_009268650.1 NC_030652_p7 antirepressor phrog_463 anti-repressor transcription regulation 1 3527 4252
YP_009268647.1 NC_030652_p4 hypothetical protein phrog_87 metallo-protease other -1 2310 2768
YP_009268683.1 NC_030652_p40 hypothetical protein phrog_1161 head-tail adaptor connector 1 21121 21435
YP_009268677.1 NC_030652_p34 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 15626 16834
YP_009268661.1 NC_030652_p18 conserved DnaC-like protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 9727 10506
YP_009268680.1 NC_030652_p37 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 19283 19807
YP_009268660.1 NC_030652_p17 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 8947 9717
YP_009268644.1 NC_030652_p1 integrase phrog_1 integrase integration and excision -1 25 1230
YP_009268668.1 NC_030652_p25 hypothetical protein phrog_258 virulence associated other 1 12294 12542
YP_009268654.1 NC_030652_p11 hypothetical protein phrog_401 unknown function unknown function 1 5062 5322
YP_009268656.1 NC_030652_p13 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5872 6651
YP_009268663.1 NC_030652_p20 hypothetical protein phrog_433 unknown function unknown function 1 10674 10895
YP_009268667.1 NC_030652_p24 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11922 12293
YP_009268691.1 NC_030652_p48 minor tail protein phrog_33 distal tail protein Dit tail 1 27239 28174
YP_009268686.1 NC_030652_p43 hypothetical protein phrog_176 tail terminator connector 1 22176 22613
YP_009268689.1 NC_030652_p46 conserved hypothetical tail assembly protein phrog_183 tail chaperone protein tail 1 23222 23716
YP_009268649.1 NC_030652_p6 Cro/CI family transcription regulator phrog_3 transcriptional repressor transcription regulation 1 3279 3488
YP_009268655.1 NC_030652_p12 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5335 5871
YP_009268665.1 NC_030652_p22 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11327 11731
YP_009268696.1 NC_030652_p53 hypothetical protein phrog_134 unknown function unknown function 1 34183 34365
YP_009268658.1 NC_030652_p15 hypothetical protein phrog_398 unknown function unknown function 1 7248 7919
YP_009268700.1 NC_030652_p57 hypothetical protein phrog_1262 unknown function unknown function 1 37972 38367
YP_009268648.1 NC_030652_p5 Cro/CI family transcription regulator phrog_8 transcriptional regulator transcription regulation -1 2838 3116
YP_009268693.1 NC_030652_p50 minor tail protein phrog_287 minor tail protein tail 1 30084 31982
YP_009268672.1 NC_030652_p29 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 13720 13956
YP_009268678.1 NC_030652_p35 portal protein phrog_64 portal protein head and packaging 1 16848 18266
YP_009268670.1 NC_030652_p27 hypothetical protein phrog_266 unknown function unknown function 1 12915 13163
YP_009268692.1 NC_030652_p49 minor tail protein phrog_663 minor head protein head and packaging 1 28185 30071
YP_009268688.1 NC_030652_p45 tail assembly protein phrog_31021 tail assembly chaperone tail 1 23222 24078
YP_009268671.1 NC_030652_p28 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 13156 13683
YP_009268697.1 NC_030652_p54 hypothetical protein phrog_276 unknown function unknown function 1 34406 34705
YP_009268682.1 NC_030652_p39 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 20795 21121
YP_009268646.1 NC_030652_p3 hypothetical protein phrog_5375 unknown function unknown function -1 1798 2289
YP_009268659.1 NC_030652_p16 hypothetical protein phrog_2232 unknown function unknown function -1 8025 8882
YP_009268699.1 NC_030652_p56 tail fiber phrog_1125 tail fiber protein tail 1 36729 37967
YP_009268702.1 NC_030652_p59 endolysin phrog_635 endolysin lysis 1 38841 40286
YP_009268687.1 NC_030652_p44 major tail protein phrog_238 major tail protein tail 1 22600 23160