| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030694 |
Definition |
Gordonia phage Rosalind, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus. |
DB of origin |
REFSEQ |
Length |
52684 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
61.92 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009268972.1 | NC_030694_p48 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30993 | 31718 |
| YP_009268976.1 | NC_030694_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32837 | 34900 |
| YP_009268999.1 | NC_030694_p75 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43018 | 43296 |
| YP_009268944.1 | NC_030694_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13538 | 13906 |
| YP_009269013.1 | NC_030694_p89 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 47931 | 48173 |
| YP_009268994.1 | NC_030694_p70 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40768 | 41184 |
| YP_009268986.1 | NC_030694_p62 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38267 | 38647 |
| YP_009268925.1 | NC_030694_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 577 | 1407 |
| YP_009269010.1 | NC_030694_p86 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 47308 | 47478 |
| YP_009268996.1 | NC_030694_p72 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41748 | 42578 |
| YP_009268938.1 | NC_030694_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10872 | 11384 |
| YP_009268927.1 | NC_030694_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2129 | 2428 |
| YP_009268945.1 | NC_030694_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13919 | 14329 |
| YP_009268970.1 | NC_030694_p46 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30509 | 30736 |
| YP_009269018.1 | NC_030694_p94 | hypothetical protein | phrog_6351 | unknown function | unknown function | -1 | 49673 | 50038 |
| YP_009268939.1 | NC_030694_p15 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11417 | 12367 |
| YP_009268984.1 | NC_030694_p60 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37595 | 37807 |
| YP_009269019.1 | NC_030694_p95 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 50041 | 50271 |
| YP_009268969.1 | NC_030694_p45 | HTH DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30219 | 30512 |
| YP_009269003.1 | NC_030694_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44983 | 45504 |
| YP_009268941.1 | NC_030694_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12612 | 12989 |
| YP_009268973.1 | NC_030694_p49 | MazG | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31715 | 32059 |
| YP_009268959.1 | NC_030694_p35 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25726 | 25965 |
| YP_009268929.1 | NC_030694_p5 | tail protein | phrog_226 | minor tail protein | tail | 1 | 2757 | 3212 |
| YP_009268979.1 | NC_030694_p55 | RDF protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35251 | 35823 |
| YP_009268931.1 | NC_030694_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3561 | 4553 |
| YP_009268997.1 | NC_030694_p73 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 42643 | 42816 |
| YP_009268934.1 | NC_030694_p10 | holin | phrog_13682 | holin | lysis | 1 | 6565 | 6792 |
| YP_009268952.1 | NC_030694_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21087 | 21530 |
| YP_009268998.1 | NC_030694_p74 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 42827 | 43021 |
| YP_009268930.1 | NC_030694_p6 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 3229 | 3564 |
| YP_009269015.1 | NC_030694_p91 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 48289 | 48702 |
| YP_009268995.1 | NC_030694_p71 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41217 | 41705 |
| YP_009269022.1 | NC_030694_p98 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 50693 | 50902 |
| YP_009268935.1 | NC_030694_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6808 | 8505 |
| YP_009268942.1 | NC_030694_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12986 | 13183 |
| YP_009268977.1 | NC_030694_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 34897 | 35088 |
| YP_009268954.1 | NC_030694_p30 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21865 | 23577 |
| YP_009268990.1 | NC_030694_p66 | hypothetical protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39926 | 40039 |
| YP_009268993.1 | NC_030694_p69 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40586 | 40765 |
| YP_009269005.1 | NC_030694_p81 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 46134 | 46406 |
| YP_009268940.1 | NC_030694_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12438 | 12608 |
| YP_009268951.1 | NC_030694_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19215 | 21002 |
| YP_009269006.1 | NC_030694_p82 | hypothetical protein | phrog_865 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46403 | 46579 |
| YP_009268980.1 | NC_030694_p56 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35949 | 36713 |
| YP_009268965.1 | NC_030694_p41 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27382 | 27606 |
| YP_009268988.1 | NC_030694_p64 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 38852 | 39487 |
| YP_009269001.1 | NC_030694_p77 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43724 | 44572 |
| YP_009268953.1 | NC_030694_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21527 | 21868 |
| YP_009268961.1 | NC_030694_p37 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 26307 | 26534 |
| YP_009269000.1 | NC_030694_p76 | hypothetical protein | phrog_4160 | unknown function | unknown function | -1 | 43323 | 43712 |
| YP_009268955.1 | NC_030694_p31 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23657 | 24013 |
| YP_009268966.1 | NC_030694_p42 | hypothetical protein | phrog_16184 | unknown function | unknown function | -1 | 27603 | 28058 |
| YP_009269012.1 | NC_030694_p88 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 47709 | 47876 |
| YP_009268950.1 | NC_030694_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18241 | 19218 |
| YP_009269017.1 | NC_030694_p93 | hypothetical protein | phrog_18197 | unknown function | unknown function | -1 | 49451 | 49594 |
| YP_009268949.1 | NC_030694_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16045 | 18231 |
| YP_009268936.1 | NC_030694_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8502 | 9962 |
| YP_009268975.1 | NC_030694_p51 | hypothetical protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 32739 | 32852 |
| YP_009269004.1 | NC_030694_p80 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 45902 | 46150 |
| YP_009269007.1 | NC_030694_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46589 | 46789 |
| YP_009268943.1 | NC_030694_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13170 | 13538 |
| YP_009268982.1 | NC_030694_p58 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 37156 | 37332 |
| YP_009268956.1 | NC_030694_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 24010 | 24318 |
| YP_009268968.1 | NC_030694_p44 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29863 | 30222 |
| YP_009268946.1 | NC_030694_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14354 | 14956 |
| YP_009268932.1 | NC_030694_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4550 | 5224 |
| YP_009268937.1 | NC_030694_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9959 | 10819 |
| YP_009268989.1 | NC_030694_p65 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39484 | 39942 |
| YP_009268971.1 | NC_030694_p47 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 30736 | 30984 |
| YP_009268981.1 | NC_030694_p57 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36710 | 37159 |
| YP_009268963.1 | NC_030694_p39 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 26908 | 27141 |
| YP_009268947.1 | NC_030694_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15070 | 15974 |
| YP_009268926.1 | NC_030694_p2 | ADP-ribosyltransferase | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1482 | 2132 |
| YP_009268933.1 | NC_030694_p9 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5514 | 6554 |
| YP_009268987.1 | NC_030694_p63 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38673 | 38852 |
| YP_009269020.1 | NC_030694_p96 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 50274 | 50456 |
| YP_009269023.1 | NC_030694_p99 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 50906 | 51190 |
| YP_009269008.1 | NC_030694_p84 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 46839 | 47120 |
| YP_009268960.1 | NC_030694_p36 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25932 | 26144 |
| YP_009268983.1 | NC_030694_p59 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37329 | 37598 |
| YP_009268958.1 | NC_030694_p34 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25360 | 25674 |
| YP_009268991.1 | NC_030694_p67 | hypothetical protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 40036 | 40134 |
| YP_009269014.1 | NC_030694_p90 | hypothetical protein | phrog_9204 | unknown function | unknown function | -1 | 48173 | 48292 |
| YP_009268967.1 | NC_030694_p43 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28072 | 29862 |
| YP_009269002.1 | NC_030694_p78 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44569 | 44967 |
| YP_009268985.1 | NC_030694_p61 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37804 | 38436 |
| YP_009269009.1 | NC_030694_p85 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47123 | 47308 |
| YP_009268978.1 | NC_030694_p54 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35085 | 35267 |
| YP_009268948.1 | NC_030694_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15070 | 15453 |
| YP_009268974.1 | NC_030694_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32176 | 32742 |
| YP_009268992.1 | NC_030694_p68 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40177 | 40575 |
| YP_009268962.1 | NC_030694_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26534 | 26908 |
| YP_009269016.1 | NC_030694_p92 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 48733 | 49461 |
| YP_009269021.1 | NC_030694_p97 | hypothetical protein | phrog_10850 | unknown function | unknown function | -1 | 50458 | 50691 |
| YP_009268964.1 | NC_030694_p40 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 27134 | 27382 |
| YP_009269011.1 | NC_030694_p87 | hypothetical protein | phrog_15584 | unknown function | unknown function | -1 | 47524 | 47706 |
| YP_009268957.1 | NC_030694_p33 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24801 | 25367 |
| YP_009268928.1 | NC_030694_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2425 | 2721 |