| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030698 |
Definition |
Gordonia phage Soups, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus. |
DB of origin |
REFSEQ |
Length |
52924 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
61.86 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009269367.1 | NC_030698_p66 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 39144 | 39779 |
| YP_009269312.1 | NC_030698_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6808 | 8505 |
| YP_009269332.1 | NC_030698_p31 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23657 | 24013 |
| YP_009269323.1 | NC_030698_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14354 | 14956 |
| YP_009269325.1 | NC_030698_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15070 | 15453 |
| YP_009269388.1 | NC_030698_p87 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 47785 | 47955 |
| YP_009269391.1 | NC_030698_p90 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48408 | 48650 |
| YP_009269345.1 | NC_030698_p44 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28153 | 29943 |
| YP_009269360.1 | NC_030698_p59 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36993 | 37451 |
| YP_009269387.1 | NC_030698_p86 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47600 | 47785 |
| YP_009269311.1 | NC_030698_p10 | holin | phrog_13682 | holin | lysis | 1 | 6565 | 6792 |
| YP_009269390.1 | NC_030698_p89 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 48186 | 48353 |
| YP_009269338.1 | NC_030698_p37 | hypothetical protein | phrog_25843 | unknown function | unknown function | -1 | 26293 | 26469 |
| YP_009269318.1 | NC_030698_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12612 | 12989 |
| YP_009269339.1 | NC_030698_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26466 | 26855 |
| YP_009269356.1 | NC_030698_p55 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35180 | 35371 |
| YP_009269362.1 | NC_030698_p61 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37621 | 37890 |
| YP_009269347.1 | NC_030698_p46 | hypothetical protein | phrog_13814 | transcriptional regulator | transcription regulation | -1 | 30303 | 30539 |
| YP_009269313.1 | NC_030698_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8502 | 9962 |
| YP_009269349.1 | NC_030698_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30826 | 31056 |
| YP_009269365.1 | NC_030698_p64 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38559 | 38939 |
| YP_009269310.1 | NC_030698_p9 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5514 | 6554 |
| YP_009269348.1 | NC_030698_p47 | HTH DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30536 | 30829 |
| YP_009269372.1 | NC_030698_p71 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40864 | 41058 |
| YP_009269400.1 | NC_030698_p99 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 51151 | 51435 |
| YP_009269358.1 | NC_030698_p57 | transcription regulator | phrog_354 | sigma-K factor | transcription regulation | -1 | 35534 | 36106 |
| YP_009269385.1 | NC_030698_p84 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 46484 | 47266 |
| YP_009269341.1 | NC_030698_p40 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 26989 | 27222 |
| YP_009269315.1 | NC_030698_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10872 | 11384 |
| YP_009269399.1 | NC_030698_p98 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 50938 | 51147 |
| YP_009269369.1 | NC_030698_p68 | hypothetical protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 40218 | 40331 |
| YP_009269322.1 | NC_030698_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13919 | 14329 |
| YP_009269373.1 | NC_030698_p72 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 41061 | 41477 |
| YP_009269359.1 | NC_030698_p58 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36232 | 36996 |
| YP_009269392.1 | NC_030698_p91 | hypothetical protein | phrog_9204 | unknown function | unknown function | -1 | 48650 | 48769 |
| YP_009269307.1 | NC_030698_p6 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 3229 | 3564 |
| YP_009269384.1 | NC_030698_p83 | hypothetical protein | phrog_865 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46298 | 46474 |
| YP_009269371.1 | NC_030698_p70 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40469 | 40867 |
| YP_009269380.1 | NC_030698_p79 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44464 | 44862 |
| YP_009269383.1 | NC_030698_p82 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 46029 | 46301 |
| YP_009269366.1 | NC_030698_p65 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38965 | 39144 |
| YP_009269308.1 | NC_030698_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3561 | 4553 |
| YP_009269305.1 | NC_030698_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2425 | 2721 |
| YP_009269352.1 | NC_030698_p51 | MazG | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31996 | 32340 |
| YP_009269386.1 | NC_030698_p85 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 47316 | 47597 |
| YP_009269326.1 | NC_030698_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16045 | 18231 |
| YP_009269376.1 | NC_030698_p75 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 42936 | 43109 |
| YP_009269342.1 | NC_030698_p41 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 27215 | 27463 |
| YP_009269304.1 | NC_030698_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2129 | 2428 |
| YP_009269340.1 | NC_030698_p39 | hypothetical protein | phrog_14604 | unknown function | unknown function | -1 | 26855 | 26989 |
| YP_009269378.1 | NC_030698_p77 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43311 | 43589 |
| YP_009269319.1 | NC_030698_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12986 | 13183 |
| YP_009269329.1 | NC_030698_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21087 | 21530 |
| YP_009269314.1 | NC_030698_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9959 | 10819 |
| YP_009269382.1 | NC_030698_p81 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 45797 | 46045 |
| YP_009269328.1 | NC_030698_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19215 | 21002 |
| YP_009269377.1 | NC_030698_p76 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 43120 | 43314 |
| YP_009269363.1 | NC_030698_p62 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37887 | 38099 |
| YP_009269303.1 | NC_030698_p2 | ADP-ribosyltransferase | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1482 | 2132 |
| YP_009269368.1 | NC_030698_p67 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39776 | 40234 |
| YP_009269337.1 | NC_030698_p36 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25932 | 26144 |
| YP_009269398.1 | NC_030698_p97 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 50751 | 50936 |
| YP_009269343.1 | NC_030698_p42 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27463 | 27687 |
| YP_009269355.1 | NC_030698_p54 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33120 | 35183 |
| YP_009269389.1 | NC_030698_p88 | hypothetical protein | phrog_15584 | unknown function | unknown function | -1 | 48001 | 48183 |
| YP_009269375.1 | NC_030698_p74 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42041 | 42871 |
| YP_009269327.1 | NC_030698_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18241 | 19218 |
| YP_009269334.1 | NC_030698_p33 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24801 | 25367 |
| YP_009269353.1 | NC_030698_p52 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32456 | 33022 |
| YP_009269321.1 | NC_030698_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13538 | 13906 |
| YP_009269320.1 | NC_030698_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13170 | 13538 |
| YP_009269357.1 | NC_030698_p56 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35368 | 35550 |
| YP_009269397.1 | NC_030698_p96 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 50518 | 50748 |
| YP_009269302.1 | NC_030698_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 577 | 1407 |
| YP_009269331.1 | NC_030698_p30 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21865 | 23577 |
| YP_009269394.1 | NC_030698_p93 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 49210 | 49938 |
| YP_009269316.1 | NC_030698_p15 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11417 | 12367 |
| YP_009269324.1 | NC_030698_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15070 | 15974 |
| YP_009269364.1 | NC_030698_p63 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38096 | 38728 |
| YP_009269370.1 | NC_030698_p69 | hypothetical protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 40328 | 40426 |
| YP_009269335.1 | NC_030698_p34 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25360 | 25674 |
| YP_009269306.1 | NC_030698_p5 | tail protein | phrog_226 | minor tail protein | tail | 1 | 2757 | 3212 |
| YP_009269361.1 | NC_030698_p60 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 37448 | 37624 |
| YP_009269354.1 | NC_030698_p53 | hypothetical protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 33019 | 33135 |
| YP_009269351.1 | NC_030698_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31790 | 31999 |
| YP_009269317.1 | NC_030698_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12438 | 12608 |
| YP_009269333.1 | NC_030698_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 24010 | 24318 |
| YP_009269344.1 | NC_030698_p43 | hypothetical protein | phrog_16184 | unknown function | unknown function | -1 | 27684 | 28139 |
| YP_009269350.1 | NC_030698_p49 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31065 | 31793 |
| YP_009269395.1 | NC_030698_p94 | hypothetical protein | phrog_18197 | unknown function | unknown function | -1 | 49928 | 50071 |
| YP_009269381.1 | NC_030698_p80 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44878 | 45399 |
| YP_009269336.1 | NC_030698_p35 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25726 | 25965 |
| YP_009269379.1 | NC_030698_p78 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43616 | 44467 |
| YP_009269396.1 | NC_030698_p95 | hypothetical protein | phrog_6351 | unknown function | unknown function | -1 | 50150 | 50515 |
| YP_009269393.1 | NC_030698_p92 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 48766 | 49179 |
| YP_009269330.1 | NC_030698_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21527 | 21868 |
| YP_009269346.1 | NC_030698_p45 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29944 | 30303 |
| YP_009269309.1 | NC_030698_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4550 | 5224 |
| YP_009269374.1 | NC_030698_p73 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41510 | 41998 |