Genomic map of Gordonia phage GMA1 (NC_030902)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030902
Definition
Gordonia phage GMA1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41207
Host Name
Gordonia malaquae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
65.71
Number of singletons
27
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009273232.1 NC_030902_p10 hypothetical protein phrog_556 minor head protein head and packaging 1 7189 7524
YP_009273225.1 NC_030902_p3 portal protein phrog_533 portal protein head and packaging 1 1681 3249
YP_009273280.1 NC_030902_p58 hypothetical protein singleton unknown function unknown function 1 34814 35008
YP_009273271.1 NC_030902_p49 WhiB family transcription factor singleton unknown function unknown function 1 32118 32558
YP_009273278.1 NC_030902_p56 hypothetical protein singleton unknown function unknown function -1 34377 34490
YP_009273238.1 NC_030902_p16 hypothetical protein phrog_22858 unknown function unknown function -1 9700 10146
YP_009273249.1 NC_030902_p27 hypothetical protein phrog_644 unknown function unknown function 1 21102 21533
YP_009273252.1 NC_030902_p30 integrase phrog_1 integrase integration and excision -1 23064 24152
YP_009273283.1 NC_030902_p61 hypothetical protein singleton unknown function unknown function 1 35540 35677
YP_009273261.1 NC_030902_p39 hypothetical protein phrog_1840 excisionase integration and excision 1 28155 28403
YP_009273244.1 NC_030902_p22 hypothetical protein phrog_2344 unknown function unknown function 1 18858 19307
YP_009273227.1 NC_030902_p5 hypothetical protein phrog_25524 unknown function unknown function 1 4631 5179
YP_009273245.1 NC_030902_p23 hypothetical protein singleton unknown function unknown function 1 19297 19617
YP_009273241.1 NC_030902_p19 hypothetical protein phrog_110 minor tail protein tail 1 15927 17480
YP_009273234.1 NC_030902_p12 hypothetical protein phrog_2595 head-tail connector protein connector 1 7805 8254
YP_009273228.1 NC_030902_p6 hypothetical protein phrog_212 major head protein head and packaging 1 5231 6211
YP_009273242.1 NC_030902_p20 lysin phrog_2998 endolysin lysis 1 17561 18616
YP_009273290.1 NC_030902_p68 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40382 40945
YP_009273250.1 NC_030902_p28 hypothetical protein phrog_7114 minor tail protein tail 1 21554 22813
YP_009273235.1 NC_030902_p13 major tail protein phrog_3884 major tail protein tail 1 8266 8748
YP_009273288.1 NC_030902_p66 hypothetical protein phrog_1467 unknown function unknown function 1 39225 39875
YP_009273223.1 NC_030902_p1 hypothetical protein singleton unknown function unknown function 1 78 440
YP_009273287.1 NC_030902_p65 hypothetical protein singleton unknown function unknown function 1 39076 39228
YP_009273275.1 NC_030902_p53 hypothetical protein phrog_1138 unknown function unknown function 1 33138 33686
YP_009273231.1 NC_030902_p9 hypothetical protein phrog_3881 head-tail connector protein connector 1 6867 7187
YP_009273229.1 NC_030902_p7 hypothetical protein phrog_15682 unknown function unknown function 1 6211 6375
YP_009273268.1 NC_030902_p46 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 29913 30710
YP_009273224.1 NC_030902_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 437 1684
YP_009273258.1 NC_030902_p36 hypothetical protein phrog_130 anti-repressor Ant transcription regulation 1 26839 27690
YP_009273269.1 NC_030902_p47 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 30722 31246
YP_009273246.1 NC_030902_p24 hypothetical protein phrog_12076 unknown function unknown function 1 19617 20363
YP_009273289.1 NC_030902_p67 hypothetical protein phrog_1042 unknown function unknown function 1 40045 40320
YP_009273257.1 NC_030902_p35 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 26567 26794
YP_009273237.1 NC_030902_p15 tail assembly protein phrog_3860 tail assembly chaperone tail 1 8784 9359
YP_009273260.1 NC_030902_p38 hypothetical protein singleton unknown function unknown function 1 28039 28158
YP_009273264.1 NC_030902_p42 hypothetical protein singleton unknown function unknown function 1 28910 29065
YP_009273276.1 NC_030902_p54 hypothetical protein phrog_38849 unknown function unknown function 1 33679 33984
YP_009273266.1 NC_030902_p44 hypothetical protein singleton unknown function unknown function 1 29606 29722
YP_009273254.1 NC_030902_p32 hypothetical protein singleton unknown function unknown function -1 24955 25266
YP_009273236.1 NC_030902_p14 tail assembly protein phrog_3860 tail assembly chaperone tail 1 8784 9703
YP_009273256.1 NC_030902_p34 hypothetical protein singleton unknown function unknown function -1 25482 26489
YP_009273285.1 NC_030902_p63 hypothetical protein phrog_67 DNA methyltransferase other 1 37160 38131
YP_009273247.1 NC_030902_p25 hypothetical protein phrog_1718 tail protein tail 1 20374 20823
YP_009273270.1 NC_030902_p48 hypothetical protein phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31243 32121
YP_009273253.1 NC_030902_p31 hypothetical protein phrog_87 metallo-protease other -1 24478 24915
YP_009273240.1 NC_030902_p18 hypothetical protein phrog_106 minor tail protein tail 1 15118 15930
YP_009273265.1 NC_030902_p43 hypothetical protein singleton unknown function unknown function 1 29052 29600
YP_009273239.1 NC_030902_p17 tape measure protein phrog_7025 tail length tape measure protein tail 1 10196 15121
YP_009273233.1 NC_030902_p11 hypothetical protein singleton unknown function unknown function 1 7533 7808
YP_009273272.1 NC_030902_p50 hypothetical protein singleton unknown function unknown function 1 32555 32782
YP_009273277.1 NC_030902_p55 hypothetical protein singleton unknown function unknown function -1 33988 34329
YP_009273282.1 NC_030902_p60 hypothetical protein singleton unknown function unknown function 1 35328 35543
YP_009273255.1 NC_030902_p33 hypothetical protein singleton unknown function unknown function -1 25267 25485
YP_009273226.1 NC_030902_p4 structural protein phrog_581 minor head protein head and packaging 1 3255 4343
YP_009273263.1 NC_030902_p41 hypothetical protein singleton unknown function unknown function 1 28629 28913
YP_009273243.1 NC_030902_p21 holin phrog_443 holin lysis 1 18613 18861
YP_009273274.1 NC_030902_p52 hypothetical protein phrog_780 unknown function unknown function 1 32897 33145
YP_009273262.1 NC_030902_p40 hypothetical protein singleton unknown function unknown function 1 28400 28561
YP_009273281.1 NC_030902_p59 hypothetical protein singleton unknown function unknown function 1 35005 35238
YP_009273286.1 NC_030902_p64 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 38118 38942
YP_009273273.1 NC_030902_p51 hypothetical protein singleton unknown function unknown function 1 32775 32900
YP_009273251.1 NC_030902_p29 hypothetical protein singleton unknown function unknown function 1 22915 23067
YP_009273248.1 NC_030902_p26 hypothetical protein singleton unknown function unknown function 1 20820 21035
YP_009273259.1 NC_030902_p37 hypothetical protein singleton unknown function unknown function 1 27722 28042
YP_009273267.1 NC_030902_p45 hypothetical protein singleton unknown function unknown function 1 29719 29916
YP_009273279.1 NC_030902_p57 hypothetical protein singleton unknown function unknown function -1 34544 34753
YP_009273230.1 NC_030902_p8 hypothetical protein phrog_541 head-tail adaptor connector 1 6454 6870
YP_009273284.1 NC_030902_p62 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 35817 37163