| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030902 |
Definition |
Gordonia phage GMA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41207 |
Host Name |
Gordonia malaquae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
65.71 |
Number of singletons |
27 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009273232.1 | NC_030902_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7189 | 7524 |
| YP_009273225.1 | NC_030902_p3 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 1681 | 3249 |
| YP_009273280.1 | NC_030902_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34814 | 35008 |
| YP_009273271.1 | NC_030902_p49 | WhiB family transcription factor | singleton | unknown function | unknown function | 1 | 32118 | 32558 |
| YP_009273278.1 | NC_030902_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34377 | 34490 |
| YP_009273238.1 | NC_030902_p16 | hypothetical protein | phrog_22858 | unknown function | unknown function | -1 | 9700 | 10146 |
| YP_009273249.1 | NC_030902_p27 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 21102 | 21533 |
| YP_009273252.1 | NC_030902_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 23064 | 24152 |
| YP_009273283.1 | NC_030902_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35540 | 35677 |
| YP_009273261.1 | NC_030902_p39 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 28155 | 28403 |
| YP_009273244.1 | NC_030902_p22 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 18858 | 19307 |
| YP_009273227.1 | NC_030902_p5 | hypothetical protein | phrog_25524 | unknown function | unknown function | 1 | 4631 | 5179 |
| YP_009273245.1 | NC_030902_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19297 | 19617 |
| YP_009273241.1 | NC_030902_p19 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 15927 | 17480 |
| YP_009273234.1 | NC_030902_p12 | hypothetical protein | phrog_2595 | head-tail connector protein | connector | 1 | 7805 | 8254 |
| YP_009273228.1 | NC_030902_p6 | hypothetical protein | phrog_212 | major head protein | head and packaging | 1 | 5231 | 6211 |
| YP_009273242.1 | NC_030902_p20 | lysin | phrog_2998 | endolysin | lysis | 1 | 17561 | 18616 |
| YP_009273290.1 | NC_030902_p68 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40382 | 40945 |
| YP_009273250.1 | NC_030902_p28 | hypothetical protein | phrog_7114 | minor tail protein | tail | 1 | 21554 | 22813 |
| YP_009273235.1 | NC_030902_p13 | major tail protein | phrog_3884 | major tail protein | tail | 1 | 8266 | 8748 |
| YP_009273288.1 | NC_030902_p66 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 39225 | 39875 |
| YP_009273223.1 | NC_030902_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 78 | 440 |
| YP_009273287.1 | NC_030902_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39076 | 39228 |
| YP_009273275.1 | NC_030902_p53 | hypothetical protein | phrog_1138 | unknown function | unknown function | 1 | 33138 | 33686 |
| YP_009273231.1 | NC_030902_p9 | hypothetical protein | phrog_3881 | head-tail connector protein | connector | 1 | 6867 | 7187 |
| YP_009273229.1 | NC_030902_p7 | hypothetical protein | phrog_15682 | unknown function | unknown function | 1 | 6211 | 6375 |
| YP_009273268.1 | NC_030902_p46 | hypothetical protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 29913 | 30710 |
| YP_009273224.1 | NC_030902_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 437 | 1684 |
| YP_009273258.1 | NC_030902_p36 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 26839 | 27690 |
| YP_009273269.1 | NC_030902_p47 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30722 | 31246 |
| YP_009273246.1 | NC_030902_p24 | hypothetical protein | phrog_12076 | unknown function | unknown function | 1 | 19617 | 20363 |
| YP_009273289.1 | NC_030902_p67 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 40045 | 40320 |
| YP_009273257.1 | NC_030902_p35 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26567 | 26794 |
| YP_009273237.1 | NC_030902_p15 | tail assembly protein | phrog_3860 | tail assembly chaperone | tail | 1 | 8784 | 9359 |
| YP_009273260.1 | NC_030902_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28039 | 28158 |
| YP_009273264.1 | NC_030902_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28910 | 29065 |
| YP_009273276.1 | NC_030902_p54 | hypothetical protein | phrog_38849 | unknown function | unknown function | 1 | 33679 | 33984 |
| YP_009273266.1 | NC_030902_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29606 | 29722 |
| YP_009273254.1 | NC_030902_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24955 | 25266 |
| YP_009273236.1 | NC_030902_p14 | tail assembly protein | phrog_3860 | tail assembly chaperone | tail | 1 | 8784 | 9703 |
| YP_009273256.1 | NC_030902_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25482 | 26489 |
| YP_009273285.1 | NC_030902_p63 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 37160 | 38131 |
| YP_009273247.1 | NC_030902_p25 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 20374 | 20823 |
| YP_009273270.1 | NC_030902_p48 | hypothetical protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31243 | 32121 |
| YP_009273253.1 | NC_030902_p31 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 24478 | 24915 |
| YP_009273240.1 | NC_030902_p18 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15118 | 15930 |
| YP_009273265.1 | NC_030902_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29052 | 29600 |
| YP_009273239.1 | NC_030902_p17 | tape measure protein | phrog_7025 | tail length tape measure protein | tail | 1 | 10196 | 15121 |
| YP_009273233.1 | NC_030902_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7533 | 7808 |
| YP_009273272.1 | NC_030902_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32555 | 32782 |
| YP_009273277.1 | NC_030902_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33988 | 34329 |
| YP_009273282.1 | NC_030902_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35328 | 35543 |
| YP_009273255.1 | NC_030902_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25267 | 25485 |
| YP_009273226.1 | NC_030902_p4 | structural protein | phrog_581 | minor head protein | head and packaging | 1 | 3255 | 4343 |
| YP_009273263.1 | NC_030902_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28629 | 28913 |
| YP_009273243.1 | NC_030902_p21 | holin | phrog_443 | holin | lysis | 1 | 18613 | 18861 |
| YP_009273274.1 | NC_030902_p52 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 32897 | 33145 |
| YP_009273262.1 | NC_030902_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28400 | 28561 |
| YP_009273281.1 | NC_030902_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35005 | 35238 |
| YP_009273286.1 | NC_030902_p64 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 38118 | 38942 |
| YP_009273273.1 | NC_030902_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32775 | 32900 |
| YP_009273251.1 | NC_030902_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22915 | 23067 |
| YP_009273248.1 | NC_030902_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20820 | 21035 |
| YP_009273259.1 | NC_030902_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27722 | 28042 |
| YP_009273267.1 | NC_030902_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29719 | 29916 |
| YP_009273279.1 | NC_030902_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34544 | 34753 |
| YP_009273230.1 | NC_030902_p8 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 6454 | 6870 |
| YP_009273284.1 | NC_030902_p62 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 35817 | 37163 |