Genomic map of Gordonia phage GMA6 (NC_030906)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030906
Definition
Gordonia phage GMA6, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Bendigovirus; Gordonia virus GMA6.
DB of origin
REFSEQ
Length
83324
Host Name
Gordonia malaquae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
115
%GC
58.17
Number of singletons
75
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009273555.1 NC_030906_p73 hypothetical protein singleton unknown function unknown function 1 58715 58966
YP_009273521.1 NC_030906_p39 hypothetical protein singleton unknown function unknown function 1 32691 33092
YP_009273552.1 NC_030906_p70 hypothetical protein singleton unknown function unknown function 1 56628 56978
YP_009273578.1 NC_030906_p96 hypothetical protein singleton unknown function unknown function 1 70127 70558
YP_009273575.1 NC_030906_p93 hypothetical protein singleton unknown function unknown function 1 68445 69272
YP_009273574.1 NC_030906_p92 hypothetical protein singleton unknown function unknown function 1 68182 68454
YP_009273583.1 NC_030906_p101 hypothetical protein singleton unknown function unknown function 1 73830 74732
YP_009273527.1 NC_030906_p45 lysin phrog_28089 endolysin lysis 1 38130 41393
YP_009273561.1 NC_030906_p79 hypothetical protein phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 60811 61245
YP_009273493.1 NC_030906_p11 hypothetical protein phrog_2662 portal protein head and packaging 1 5324 7891
YP_009273483.1 NC_030906_p1 hypothetical protein singleton unknown function unknown function 1 21 206
YP_009273576.1 NC_030906_p94 hypothetical protein singleton unknown function unknown function 1 69278 69442
YP_009273509.1 NC_030906_p27 hypothetical protein singleton unknown function unknown function 1 20993 21688
YP_009273554.1 NC_030906_p72 hypothetical protein singleton unknown function unknown function 1 57807 58559
YP_009273597.1 NC_030906_p115 hypothetical protein singleton unknown function unknown function 1 83005 83148
YP_009273503.1 NC_030906_p21 hypothetical protein singleton unknown function unknown function 1 18597 18785
YP_009273520.1 NC_030906_p38 hypothetical protein singleton unknown function unknown function 1 32254 32694
YP_009273532.1 NC_030906_p50 hypothetical protein phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism -1 43215 43670
YP_009273484.1 NC_030906_p2 small terminase subunit singleton unknown function unknown function 1 203 373
YP_009273562.1 NC_030906_p80 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism 1 61160 64054
YP_009273587.1 NC_030906_p105 hypothetical protein singleton unknown function unknown function 1 78755 78997
YP_009273540.1 NC_030906_p58 hypothetical protein singleton unknown function unknown function 1 48979 49254
YP_009273549.1 NC_030906_p67 hypothetical protein singleton unknown function unknown function 1 55029 55838
YP_009273507.1 NC_030906_p25 hypothetical protein singleton unknown function unknown function 1 19951 20526
YP_009273538.1 NC_030906_p56 hypothetical protein singleton unknown function unknown function 1 48391 48603
YP_009273539.1 NC_030906_p57 hypothetical protein phrog_542 unknown function unknown function 1 48596 48976
YP_009273544.1 NC_030906_p62 von Willebrand factor protein singleton unknown function unknown function 1 51221 53134
YP_009273541.1 NC_030906_p59 hypothetical protein singleton unknown function unknown function 1 49254 49418
YP_009273512.1 NC_030906_p30 major tail protein phrog_5102 tail tube protein tail 1 23527 23934
YP_009273573.1 NC_030906_p91 hypothetical protein singleton unknown function unknown function 1 67874 68185
YP_009273489.1 NC_030906_p7 hypothetical protein singleton unknown function unknown function 1 3711 4031
YP_009273534.1 NC_030906_p52 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 44611 46011
YP_009273502.1 NC_030906_p20 capsid structural protein phrog_10 major head protein head and packaging 1 17179 18546
YP_009273530.1 NC_030906_p48 hypothetical protein phrog_8672 unknown function unknown function 1 42191 42718
YP_009273500.1 NC_030906_p18 hypothetical protein phrog_356 minor tail protein tail 1 14860 15507
YP_009273590.1 NC_030906_p108 hypothetical protein singleton unknown function unknown function 1 80146 81057
YP_009273593.1 NC_030906_p111 hypothetical protein phrog_474 phosphofructokinase other 1 81832 82194
YP_009273591.1 NC_030906_p109 hypothetical protein singleton unknown function unknown function 1 81475 81708
YP_009273487.1 NC_030906_p5 hypothetical protein singleton unknown function unknown function 1 3281 3460
YP_009273589.1 NC_030906_p107 hypothetical protein singleton unknown function unknown function 1 79682 80032
YP_009273596.1 NC_030906_p114 hypothetical protein singleton unknown function unknown function 1 82827 82988
YP_009273491.1 NC_030906_p9 hypothetical protein singleton unknown function unknown function 1 4609 4851
YP_009273486.1 NC_030906_p4 hypothetical protein singleton unknown function unknown function 1 2942 3256
YP_009273594.1 NC_030906_p112 hypothetical protein singleton unknown function unknown function 1 82328 82540
YP_009273518.1 NC_030906_p36 hypothetical protein phrog_52 tail protein tail 1 29518 30879
YP_009273513.1 NC_030906_p31 tail assembly protein singleton unknown function unknown function 1 24035 24801
YP_009273537.1 NC_030906_p55 hypothetical protein singleton unknown function unknown function 1 48033 48371
YP_009273567.1 NC_030906_p85 hypothetical protein phrog_2526 unknown function unknown function 1 65127 65333
YP_009273563.1 NC_030906_p81 nuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 64168 64497
YP_009273586.1 NC_030906_p104 hypothetical protein singleton unknown function unknown function 1 76794 78356
YP_009273569.1 NC_030906_p87 hypothetical protein singleton unknown function unknown function 1 65491 65952
YP_009273542.1 NC_030906_p60 hypothetical protein singleton unknown function unknown function 1 49469 49927
YP_009273488.1 NC_030906_p6 hypothetical protein singleton unknown function unknown function 1 3457 3711
YP_009273501.1 NC_030906_p19 hypothetical protein phrog_80 head maturation protease head and packaging 1 15585 17039
YP_009273523.1 NC_030906_p41 hypothetical protein phrog_6 baseplate wedge subunit tail 1 33414 34571
YP_009273553.1 NC_030906_p71 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 57069 57743
YP_009273564.1 NC_030906_p82 hypothetical protein singleton unknown function unknown function 1 64501 64749
YP_009273526.1 NC_030906_p44 hypothetical protein singleton unknown function unknown function 1 37736 38137
YP_009273572.1 NC_030906_p90 hypothetical protein singleton unknown function unknown function 1 67738 67881
YP_009273581.1 NC_030906_p99 hypothetical protein singleton unknown function unknown function 1 72859 73206
YP_009273556.1 NC_030906_p74 hypothetical protein singleton unknown function unknown function 1 59155 59451
YP_009273568.1 NC_030906_p86 hypothetical protein singleton unknown function unknown function 1 65333 65557
YP_009273496.1 NC_030906_p14 hypothetical protein phrog_960 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9974 13003
YP_009273498.1 NC_030906_p16 hypothetical protein phrog_102 endolysin lysis 1 13599 14291
YP_009273533.1 NC_030906_p51 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 43667 44602
YP_009273525.1 NC_030906_p43 structural protein singleton unknown function unknown function 1 35754 37736
YP_009273495.1 NC_030906_p13 hypothetical protein phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 8862 9977
YP_009273551.1 NC_030906_p69 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 56385 56627
YP_009273510.1 NC_030906_p28 hypothetical protein singleton unknown function unknown function 1 21703 22032
YP_009273559.1 NC_030906_p77 hypothetical protein phrog_13626 unknown function unknown function 1 60323 60514
YP_009273494.1 NC_030906_p12 hypothetical protein singleton unknown function unknown function 1 7888 8862
YP_009273585.1 NC_030906_p103 hypothetical protein phrog_2647 head decoration head and packaging 1 75571 76686
YP_009273529.1 NC_030906_p47 hypothetical protein singleton unknown function unknown function 1 41896 42207
YP_009273584.1 NC_030906_p102 hypothetical protein singleton unknown function unknown function 1 74814 75557
YP_009273595.1 NC_030906_p113 hypothetical protein singleton unknown function unknown function 1 82537 82827
YP_009273531.1 NC_030906_p49 hypothetical protein singleton unknown function unknown function -1 42746 42877
YP_009273522.1 NC_030906_p40 lysozyme phrog_5026 baseplate protein tail 1 33089 33412
YP_009273490.1 NC_030906_p8 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 4028 4612
YP_009273485.1 NC_030906_p3 large terminase subunit phrog_979 terminase large subunit head and packaging 1 370 2850
YP_009273545.1 NC_030906_p63 hypothetical protein singleton unknown function unknown function 1 53274 53819
YP_009273505.1 NC_030906_p23 hypothetical protein singleton unknown function unknown function 1 19099 19305
YP_009273579.1 NC_030906_p97 holliday junction resolvase singleton unknown function unknown function 1 70563 71153
YP_009273524.1 NC_030906_p42 hypothetical protein singleton unknown function unknown function 1 34564 35736
YP_009273566.1 NC_030906_p84 hypothetical protein singleton unknown function unknown function 1 64909 65130
YP_009273519.1 NC_030906_p37 hydrolase phrog_52 tail protein tail 1 30895 32241
YP_009273577.1 NC_030906_p95 hypothetical protein singleton unknown function unknown function 1 69442 69879
YP_009273565.1 NC_030906_p83 hypothetical protein singleton unknown function unknown function 1 64766 64912
YP_009273515.1 NC_030906_p33 tape measure protein phrog_58 tail length tape measure protein tail 1 24842 28261
YP_009273571.1 NC_030906_p89 hypothetical protein phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 67162 67716
YP_009273550.1 NC_030906_p68 hypothetical protein singleton unknown function unknown function 1 55843 56382
YP_009273547.1 NC_030906_p65 hypothetical protein phrog_4480 unknown function unknown function 1 54263 54556
YP_009273560.1 NC_030906_p78 hypothetical protein singleton unknown function unknown function 1 60511 60807
YP_009273543.1 NC_030906_p61 ATPase family protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover 1 49979 51178
YP_009273516.1 NC_030906_p34 lysin singleton unknown function unknown function 1 28264 29061
YP_009273557.1 NC_030906_p75 hypothetical protein singleton unknown function unknown function 1 59453 59935
YP_009273506.1 NC_030906_p24 hypothetical protein singleton unknown function unknown function 1 19372 19947
YP_009273508.1 NC_030906_p26 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 20625 20996
YP_009273580.1 NC_030906_p98 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 71158 72720
YP_009273514.1 NC_030906_p32 tail assembly protein phrog_5088 tail assembly chaperone tail 1 24035 24604
YP_009273497.1 NC_030906_p15 hypothetical protein singleton unknown function unknown function 1 13000 13599
YP_009273499.1 NC_030906_p17 hypothetical protein singleton unknown function unknown function 1 14291 14863
YP_009273558.1 NC_030906_p76 hypothetical protein singleton unknown function unknown function 1 59922 60326
YP_009273570.1 NC_030906_p88 recombinase phrog_97 UvsX-like recombinase other 1 65953 67116
YP_009273528.1 NC_030906_p46 holin phrog_3428 holin lysis 1 41390 41899
YP_009273582.1 NC_030906_p100 hypothetical protein singleton unknown function unknown function 1 73320 73802
YP_009273517.1 NC_030906_p35 hypothetical protein phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29073 29516
YP_009273592.1 NC_030906_p110 hypothetical protein singleton unknown function unknown function 1 81714 81839
YP_009273536.1 NC_030906_p54 hypothetical protein singleton unknown function unknown function -1 46511 46978
YP_009273511.1 NC_030906_p29 structural protein phrog_23 tail sheath tail 1 22036 23484
YP_009273546.1 NC_030906_p64 hypothetical protein singleton unknown function unknown function 1 53816 54250
YP_009273588.1 NC_030906_p106 hypothetical protein singleton unknown function unknown function 1 79073 79291
YP_009273492.1 NC_030906_p10 hypothetical protein singleton unknown function unknown function 1 4844 5236
YP_009273504.1 NC_030906_p22 hypothetical protein singleton unknown function unknown function 1 18785 19093
YP_009273548.1 NC_030906_p66 hypothetical protein singleton unknown function unknown function 1 54553 54771
YP_009273535.1 NC_030906_p53 hypothetical protein singleton unknown function unknown function -1 46243 46431