functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_030908 |
Definition |
Pseudomonas phage JBD69, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36938 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
63.93 |
Number of singletons |
0 |
Number of paralogs |
2 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_009273651.1 | NC_030908_p26 | hypothetical protein | phrog_36351 | unknown function | unknown function | 1 | 11866 | 11985 |
YP_009273634.1 | NC_030908_p9 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6014 | 6130 |
YP_009273627.1 | NC_030908_p2 | DNA-binding protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1042 | 1386 |
YP_009273671.1 | NC_030908_p46 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23956 | 24432 |
YP_009273630.1 | NC_030908_p5 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 2146 | 2556 |
YP_009273655.1 | NC_030908_p30 | DNA-binding protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12690 | 13190 |
YP_009273667.1 | NC_030908_p42 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 22078 | 22494 |
YP_009273642.1 | NC_030908_p17 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 8519 | 8710 |
YP_009273646.1 | NC_030908_p21 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9742 | 10143 |
YP_009273679.1 | NC_030908_p54 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32913 | 35120 |
YP_009273680.1 | NC_030908_p55 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 35117 | 36268 |
YP_009273647.1 | NC_030908_p22 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10136 | 10585 |
YP_009273674.1 | NC_030908_p49 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 29023 | 29946 |
YP_009273628.1 | NC_030908_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1389 | 1823 |
YP_009273675.1 | NC_030908_p50 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29946 | 31649 |
YP_009273656.1 | NC_030908_p31 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 13196 | 13690 |
YP_009273670.1 | NC_030908_p45 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23164 | 23934 |
YP_009273631.1 | NC_030908_p6 | transposase | phrog_310 | transposase | integration and excision | 1 | 2549 | 4621 |
YP_009273645.1 | NC_030908_p20 | hypothetical protein | phrog_3273 | unknown function | unknown function | 1 | 9524 | 9745 |
YP_009273673.1 | NC_030908_p48 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28065 | 29021 |
YP_009273668.1 | NC_030908_p43 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 22491 | 22964 |
YP_009273665.1 | NC_030908_p40 | hypothetical protein | phrog_4833 | unknown function | unknown function | 1 | 21573 | 21914 |
YP_009273635.1 | NC_030908_p10 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6130 | 6543 |
YP_009273658.1 | NC_030908_p33 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 15384 | 16964 |
YP_009273641.1 | NC_030908_p16 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8236 | 8517 |
YP_009273678.1 | NC_030908_p53 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32705 | 32923 |
YP_009273652.1 | NC_030908_p27 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11982 | 12383 |
YP_009273676.1 | NC_030908_p51 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31639 | 32460 |
YP_009273682.1 | NC_030908_p57 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36626 | 36850 |
YP_009273672.1 | NC_030908_p47 | tail length tape-measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 24581 | 28057 |
YP_009273650.1 | NC_030908_p25 | capsid and scaffold protein | phrog_873 | endolysin | head and packaging | 1 | 11450 | 11866 |
YP_009273649.1 | NC_030908_p24 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 11028 | 11450 |
YP_009273677.1 | NC_030908_p52 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32469 | 32708 |
YP_009273681.1 | NC_030908_p56 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 36271 | 36552 |
YP_009273659.1 | NC_030908_p34 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16964 | 18250 |
YP_009273660.1 | NC_030908_p35 | capsid and scaffold protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18250 | 18717 |
YP_009273654.1 | NC_030908_p29 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12494 | 12682 |
YP_009273629.1 | NC_030908_p4 | hypothetical protein | phrog_8647 | unknown function | unknown function | 1 | 1823 | 2149 |
YP_009273637.1 | NC_030908_p12 | host-nuclease inhibitor protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6834 | 7352 |
YP_009273636.1 | NC_030908_p11 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6506 | 6817 |
YP_009273633.1 | NC_030908_p8 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5382 | 6029 |
YP_009273648.1 | NC_030908_p23 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 10688 | 11035 |
YP_009273643.1 | NC_030908_p18 | hypothetical protein | phrog_5249 | unknown function | unknown function | 1 | 8710 | 9159 |
YP_009273626.1 | NC_030908_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 170 | 892 |
YP_009273666.1 | NC_030908_p41 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21914 | 22081 |
YP_009273662.1 | NC_030908_p37 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 19036 | 19275 |
YP_009273664.1 | NC_030908_p39 | major capsid protein | phrog_371 | major head protein | head and packaging | 1 | 20592 | 21506 |
YP_009273639.1 | NC_030908_p14 | host nuclease inhibitor protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7733 | 8011 |
YP_009273663.1 | NC_030908_p38 | protease (I) and scaffold (Z) protein | phrog_328 | head maturation protease | head and packaging | 1 | 19491 | 20588 |
YP_009273653.1 | NC_030908_p28 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 12376 | 12489 |
YP_009273669.1 | NC_030908_p44 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22952 | 23131 |
YP_009273638.1 | NC_030908_p13 | host nuclease inhibitor protein | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7354 | 7731 |
YP_009273661.1 | NC_030908_p36 | hypothetical protein | phrog_20331 | unknown function | unknown function | 1 | 18828 | 19064 |
YP_009273644.1 | NC_030908_p19 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 9168 | 9437 |
YP_009273632.1 | NC_030908_p7 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4636 | 5385 |
YP_009273657.1 | NC_030908_p32 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13722 | 15374 |
YP_009273640.1 | NC_030908_p15 | hypothetical protein | phrog_7895 | unknown function | unknown function | 1 | 8013 | 8234 |