| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030909 |
Definition |
Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
50183 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
62.18 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009273755.1 | NC_030909_p73 | protein of an unannotated phage | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48380 | 50122 |
| YP_009273710.1 | NC_030909_p28 | protein of an unannotated phage | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23130 | 23615 |
| YP_009273723.1 | NC_030909_p41 | protein of an unannotated phage | phrog_198 | holin | lysis | -1 | 31981 | 32370 |
| YP_009273724.1 | NC_030909_p42 | protein of an unannotated phage | phrog_3373 | unknown function | unknown function | -1 | 32485 | 33354 |
| YP_009273692.1 | NC_030909_p10 | protein of an unannotated phage | phrog_4029 | unknown function | unknown function | 1 | 6727 | 7275 |
| YP_009273709.1 | NC_030909_p27 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | -1 | 22668 | 23030 |
| YP_009273690.1 | NC_030909_p8 | protein of an unannotated phage | phrog_343 | unknown function | unknown function | 1 | 6254 | 6526 |
| YP_009273687.1 | NC_030909_p5 | protein of an unannotated phage | phrog_11137 | unknown function | unknown function | 1 | 5462 | 5632 |
| YP_009273752.1 | NC_030909_p70 | protein of an unannotated phage | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46300 | 47226 |
| YP_009273742.1 | NC_030909_p60 | protein of an unannotated phage | phrog_14855 | unknown function | unknown function | 1 | 42161 | 42700 |
| YP_009273696.1 | NC_030909_p14 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 9753 | 9878 |
| YP_009273719.1 | NC_030909_p37 | protein of an unannotated phage | phrog_10752 | unknown function | unknown function | -1 | 29719 | 29916 |
| YP_009273737.1 | NC_030909_p55 | protein of an unannotated phage | phrog_2707 | unknown function | unknown function | -1 | 39949 | 40263 |
| YP_009273712.1 | NC_030909_p30 | protein of an unannotated phage | phrog_786 | unknown function | unknown function | -1 | 23929 | 24330 |
| YP_009273748.1 | NC_030909_p66 | protein of an unannotated phage | phrog_5864 | unknown function | unknown function | 1 | 44664 | 44801 |
| YP_009273693.1 | NC_030909_p11 | protein of an unannotated phage | phrog_16138 | unknown function | unknown function | 1 | 7325 | 8248 |
| YP_009273741.1 | NC_030909_p59 | protein of an unannotated phage | phrog_9037 | unknown function | unknown function | 1 | 41856 | 42119 |
| YP_009273691.1 | NC_030909_p9 | protein of an unannotated phage | phrog_2440 | transcriptional regulator | transcription regulation | 1 | 6527 | 6730 |
| YP_009273743.1 | NC_030909_p61 | protein of an unannotated phage | phrog_5527 | transcriptional regulator | transcription regulation | 1 | 42757 | 43128 |
| YP_009273736.1 | NC_030909_p54 | protein of an unannotated phage | phrog_6136 | unknown function | unknown function | 1 | 39632 | 39856 |
| YP_009273708.1 | NC_030909_p26 | protein of an unannotated phage | phrog_782 | unknown function | unknown function | -1 | 22297 | 22671 |
| YP_009273713.1 | NC_030909_p31 | protein of an unannotated phage | phrog_2138 | unknown function | unknown function | -1 | 24415 | 24606 |
| YP_009273697.1 | NC_030909_p15 | protein of an unannotated phage | phrog_23559 | unknown function | unknown function | -1 | 9973 | 10212 |
| YP_009273740.1 | NC_030909_p58 | protein of an unannotated phage | phrog_24301 | unknown function | unknown function | 1 | 41702 | 41839 |
| YP_009273703.1 | NC_030909_p21 | protein of an unannotated phage | phrog_396 | minor tail protein | tail | -1 | 17233 | 17724 |
| YP_009273722.1 | NC_030909_p40 | protein of an unannotated phage | phrog_217 | holin | lysis | -1 | 31704 | 31988 |
| YP_009273698.1 | NC_030909_p16 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 11005 | 11736 |
| YP_009273686.1 | NC_030909_p4 | protein of an unannotated phage | phrog_28019 | unknown function | unknown function | 1 | 5189 | 5356 |
| YP_009273731.1 | NC_030909_p49 | protein of an unannotated phage | phrog_3983 | unknown function | unknown function | 1 | 37128 | 37640 |
| YP_009273695.1 | NC_030909_p13 | protein of an unannotated phage | phrog_7 | endolysin | lysis | -1 | 9208 | 9642 |
| YP_009273720.1 | NC_030909_p38 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | -1 | 29916 | 31169 |
| YP_009273734.1 | NC_030909_p52 | protein of an unannotated phage | phrog_3135 | unknown function | unknown function | 1 | 38967 | 39281 |
| YP_009273700.1 | NC_030909_p18 | protein of an unannotated phage | phrog_32929 | unknown function | unknown function | -1 | 12002 | 14059 |
| YP_009273733.1 | NC_030909_p51 | protein of an unannotated phage | phrog_8558 | unknown function | unknown function | 1 | 38638 | 38889 |
| YP_009273750.1 | NC_030909_p68 | protein of an unannotated phage | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45276 | 46079 |
| YP_009273728.1 | NC_030909_p46 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 36020 | 36202 |
| YP_009273694.1 | NC_030909_p12 | protein of an unannotated phage | phrog_13 | Rz-like spanin | lysis | -1 | 8591 | 9043 |
| YP_009273738.1 | NC_030909_p56 | protein of an unannotated phage | phrog_2707 | unknown function | unknown function | 1 | 40357 | 40596 |
| YP_009273701.1 | NC_030909_p19 | protein of an unannotated phage | phrog_469 | tail protein | tail | -1 | 14120 | 16849 |
| YP_009273704.1 | NC_030909_p22 | protein of an unannotated phage | phrog_384 | virion structural protein | head and packaging | -1 | 17708 | 18106 |
| YP_009273726.1 | NC_030909_p44 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 33819 | 35234 |
| YP_009273717.1 | NC_030909_p35 | protein of an unannotated phage | phrog_758 | head morphogenesis | head and packaging | -1 | 27460 | 28311 |
| YP_009273702.1 | NC_030909_p20 | protein of an unannotated phage | phrog_329 | minor tail protein | tail | -1 | 16821 | 17228 |
| YP_009273684.1 | NC_030909_p2 | protein of an unannotated phage | phrog_116 | DNA methyltransferase | other | 1 | 2662 | 4752 |
| YP_009273754.1 | NC_030909_p72 | protein of an unannotated phage | phrog_6576 | unknown function | unknown function | 1 | 47444 | 48376 |
| YP_009273747.1 | NC_030909_p65 | protein of an unannotated phage | phrog_6457 | unknown function | unknown function | 1 | 44489 | 44680 |
| YP_009273745.1 | NC_030909_p63 | protein of an unannotated phage | phrog_6125 | unknown function | unknown function | 1 | 44135 | 44287 |
| YP_009273715.1 | NC_030909_p33 | protein of an unannotated phage | phrog_766 | head decoration | head and packaging | -1 | 25726 | 26175 |
| YP_009273732.1 | NC_030909_p50 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | -1 | 37899 | 38141 |
| YP_009273699.1 | NC_030909_p17 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 11739 | 11864 |
| YP_009273721.1 | NC_030909_p39 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | -1 | 31153 | 31695 |
| YP_009273725.1 | NC_030909_p43 | protein of an unannotated phage | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 33383 | 33826 |
| YP_009273683.1 | NC_030909_p1 | protein of an unannotated phage | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 35 | 2665 |
| YP_009273711.1 | NC_030909_p29 | protein of an unannotated phage | phrog_797 | unknown function | unknown function | -1 | 23612 | 23932 |
| YP_009273705.1 | NC_030909_p23 | protein of an unannotated phage | phrog_1107 | tail length tape measure protein | tail | -1 | 18172 | 20673 |
| YP_009273716.1 | NC_030909_p34 | protein of an unannotated phage | phrog_760 | unknown function | unknown function | -1 | 26179 | 27456 |
| YP_009273727.1 | NC_030909_p45 | protein of an unannotated phage | phrog_10469 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 35227 | 36027 |
| YP_009273746.1 | NC_030909_p64 | protein of an unannotated phage | phrog_6033 | unknown function | unknown function | 1 | 44271 | 44492 |
| YP_009273749.1 | NC_030909_p67 | protein of an unannotated phage | phrog_25114 | unknown function | unknown function | 1 | 44809 | 45279 |
| YP_009273689.1 | NC_030909_p7 | protein of an unannotated phage | phrog_5614 | unknown function | unknown function | 1 | 5766 | 6251 |
| YP_009273688.1 | NC_030909_p6 | protein of an unannotated phage | phrog_5315 | unknown function | unknown function | 1 | 5635 | 5781 |
| YP_009273744.1 | NC_030909_p62 | protein of an unannotated phage | phrog_1934 | unknown function | unknown function | 1 | 43605 | 44135 |
| YP_009273730.1 | NC_030909_p48 | protein of an unannotated phage | phrog_163 | CII-like transcriptional activator | transcription regulation | -1 | 36473 | 37045 |
| YP_009273729.1 | NC_030909_p47 | protein of an unannotated phage | phrog_6111 | unknown function | unknown function | -1 | 36189 | 36470 |
| YP_009273753.1 | NC_030909_p71 | protein of an unannotated phage | phrog_7521 | unknown function | unknown function | 1 | 47233 | 47433 |
| YP_009273685.1 | NC_030909_p3 | protein of an unannotated phage | phrog_3190 | unknown function | unknown function | 1 | 4749 | 5192 |
| YP_009273718.1 | NC_030909_p36 | protein of an unannotated phage | phrog_146 | portal protein | head and packaging | -1 | 28346 | 29716 |
| YP_009273735.1 | NC_030909_p53 | protein of an unannotated phage | phrog_17996 | unknown function | unknown function | 1 | 39298 | 39540 |
| YP_009273706.1 | NC_030909_p24 | protein of an unannotated phage | phrog_791 | unknown function | unknown function | -1 | 20673 | 21290 |
| YP_009273707.1 | NC_030909_p25 | protein of an unannotated phage | phrog_853 | major tail protein | tail | -1 | 21287 | 22282 |
| YP_009273714.1 | NC_030909_p32 | protein of an unannotated phage | phrog_771 | virion structural protein | head and packaging | -1 | 24616 | 25710 |
| YP_009273751.1 | NC_030909_p69 | protein of an unannotated phage | phrog_16104 | unknown function | unknown function | 1 | 46088 | 46303 |
| YP_009273739.1 | NC_030909_p57 | protein of an unannotated phage | phrog_953 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41128 | 41685 |