| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030914 |
Definition |
Gordonia phage Kvothe, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Demosthenesvirus. |
DB of origin |
REFSEQ |
Length |
75462 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
59.48 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009274177.1 | NC_030914_p49 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 48643 | 49755 |
| YP_009274193.1 | NC_030914_p65 | hypothetical protein | phrog_18683 | unknown function | unknown function | -1 | 57979 | 58320 |
| YP_009274207.1 | NC_030914_p79 | hypothetical protein | phrog_12545 | unknown function | unknown function | -1 | 63207 | 63551 |
| YP_009274150.1 | NC_030914_p22 | head-to-tail connector protein | phrog_23445 | head-tail connector protein | connector | 1 | 20334 | 20762 |
| YP_009274194.1 | NC_030914_p66 | hypothetical protein | phrog_31638 | unknown function | unknown function | -1 | 58325 | 58444 |
| YP_009274135.1 | NC_030914_p7 | hypothetical protein | phrog_7609 | unknown function | unknown function | -1 | 5890 | 6288 |
| YP_009274151.1 | NC_030914_p23 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 20766 | 21785 |
| YP_009274168.1 | NC_030914_p40 | hypothetical protein | phrog_6890 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 44185 | 44637 |
| YP_009274217.1 | NC_030914_p89 | hypothetical protein | phrog_889 | unknown function | unknown function | -1 | 70063 | 70671 |
| YP_009274188.1 | NC_030914_p60 | hypothetical protein | phrog_7044 | unknown function | unknown function | -1 | 55370 | 55678 |
| YP_009274140.1 | NC_030914_p12 | tail fiber protein | phrog_9707 | tail protein | tail | 1 | 12541 | 14934 |
| YP_009274212.1 | NC_030914_p84 | hypothetical protein | phrog_24702 | unknown function | unknown function | -1 | 66356 | 66529 |
| YP_009274139.1 | NC_030914_p11 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 10815 | 12554 |
| YP_009274161.1 | NC_030914_p33 | lysin A | phrog_880 | endolysin | lysis | 1 | 39823 | 40464 |
| YP_009274208.1 | NC_030914_p80 | hypothetical protein | phrog_10140 | unknown function | unknown function | -1 | 63551 | 63763 |
| YP_009274167.1 | NC_030914_p39 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | -1 | 43973 | 44173 |
| YP_009274197.1 | NC_030914_p69 | hypothetical protein | phrog_5406 | unknown function | unknown function | -1 | 58803 | 59495 |
| YP_009274165.1 | NC_030914_p37 | membrane protein | phrog_9090 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 42225 | 42620 |
| YP_009274142.1 | NC_030914_p14 | capsid maturation protease | phrog_976 | head maturation protease | head and packaging | 1 | 15280 | 16491 |
| YP_009274211.1 | NC_030914_p83 | hypothetical protein | phrog_32321 | unknown function | unknown function | -1 | 66049 | 66363 |
| YP_009274131.1 | NC_030914_p3 | DNA binding domain protein | phrog_5311 | helicase | DNA, RNA and nucleotide metabolism | -1 | 3195 | 5336 |
| YP_009274134.1 | NC_030914_p6 | hypothetical protein | phrog_12599 | unknown function | unknown function | -1 | 5667 | 5900 |
| YP_009274202.1 | NC_030914_p74 | hypothetical protein | phrog_6646 | unknown function | unknown function | -1 | 61033 | 61479 |
| YP_009274205.1 | NC_030914_p77 | HNH endonuclease | phrog_9508 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 62392 | 62928 |
| YP_009274191.1 | NC_030914_p63 | hypothetical protein | phrog_6495 | unknown function | unknown function | -1 | 56826 | 57089 |
| YP_009274146.1 | NC_030914_p18 | head-to-tail connector protein | phrog_6879 | head-tail connector protein | connector | 1 | 18546 | 18836 |
| YP_009274160.1 | NC_030914_p32 | hypothetical protein | phrog_6901 | unknown function | unknown function | 1 | 39497 | 39826 |
| YP_009274130.1 | NC_030914_p2 | hypothetical protein | phrog_7062 | unknown function | unknown function | -1 | 2876 | 3193 |
| YP_009274196.1 | NC_030914_p68 | hypothetical protein | phrog_30119 | unknown function | unknown function | -1 | 58661 | 58813 |
| YP_009274189.1 | NC_030914_p61 | hypothetical protein | phrog_6622 | unknown function | unknown function | -1 | 55681 | 56337 |
| YP_009274209.1 | NC_030914_p81 | cobalamin biosynthesis protein | phrog_5298 | cobalamin biosynthesis protein | moron, auxiliary metabolic gene and host takeover | -1 | 63774 | 65801 |
| YP_009274190.1 | NC_030914_p62 | hypothetical protein | phrog_6792 | unknown function | unknown function | -1 | 56300 | 56824 |
| YP_009274184.1 | NC_030914_p56 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 51515 | 53206 |
| YP_009274201.1 | NC_030914_p73 | hypothetical protein | phrog_7690 | unknown function | unknown function | -1 | 60545 | 60937 |
| YP_009274144.1 | NC_030914_p16 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 17015 | 18229 |
| YP_009274136.1 | NC_030914_p8 | DNA primase | phrog_5362 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 6285 | 7157 |
| YP_009274187.1 | NC_030914_p59 | hypothetical protein | phrog_6746 | unknown function | unknown function | -1 | 55054 | 55377 |
| YP_009274204.1 | NC_030914_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 62114 | 62287 |
| YP_009274210.1 | NC_030914_p82 | hypothetical protein | phrog_17060 | unknown function | unknown function | -1 | 65801 | 66049 |
| YP_009274172.1 | NC_030914_p44 | lysin B | phrog_102 | endolysin | lysis | -1 | 45814 | 46641 |
| YP_009274155.1 | NC_030914_p27 | minor tail protein | phrog_5287 | minor tail protein | tail | 1 | 31965 | 34529 |
| YP_009274138.1 | NC_030914_p10 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 8735 | 10702 |
| YP_009274159.1 | NC_030914_p31 | membrane protein | phrog_565 | holin | lysis | 1 | 38997 | 39431 |
| YP_009274226.1 | NC_030914_p98 | hypothetical protein | phrog_17922 | unknown function | unknown function | -1 | 73822 | 74124 |
| YP_009274170.1 | NC_030914_p42 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 44834 | 45550 |
| YP_009274132.1 | NC_030914_p4 | hypothetical protein | phrog_7096 | unknown function | unknown function | -1 | 5329 | 5547 |
| YP_009274179.1 | NC_030914_p51 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 49990 | 50640 |
| YP_009274147.1 | NC_030914_p19 | head-to-tail connector protein | phrog_195 | head-tail adaptor | connector | 1 | 18847 | 19347 |
| YP_009274175.1 | NC_030914_p47 | RusA-like ribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 47590 | 48126 |
| YP_009274225.1 | NC_030914_p97 | hypothetical protein | phrog_23086 | unknown function | unknown function | -1 | 73482 | 73817 |
| YP_009274195.1 | NC_030914_p67 | hypothetical protein | phrog_33888 | unknown function | unknown function | -1 | 58494 | 58664 |
| YP_009274154.1 | NC_030914_p26 | tape measure protein | phrog_5448 | tail length tape measure protein | tail | 1 | 22900 | 31968 |
| YP_009274213.1 | NC_030914_p85 | AAA ATPase | phrog_5424 | ATPase | other | -1 | 66529 | 68076 |
| YP_009274152.1 | NC_030914_p24 | tail assembly chaperone | phrog_3096 | tail assembly chaperone | tail | 1 | 21889 | 22772 |
| YP_009274143.1 | NC_030914_p15 | scaffolding protein | phrog_5455 | head decoration | head and packaging | 1 | 16535 | 17002 |
| YP_009274200.1 | NC_030914_p72 | hypothetical protein | phrog_5392 | unknown function | unknown function | -1 | 60183 | 60503 |
| YP_009274182.1 | NC_030914_p54 | hypothetical protein | phrog_22291 | unknown function | unknown function | -1 | 51032 | 51274 |
| YP_009274156.1 | NC_030914_p28 | minor tail protein | phrog_1887 | tail protein | tail | 1 | 34529 | 36787 |
| YP_009274166.1 | NC_030914_p38 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42764 | 43969 |
| YP_009274174.1 | NC_030914_p46 | hypothetical protein | phrog_23068 | unknown function | unknown function | -1 | 47138 | 47593 |
| YP_009274176.1 | NC_030914_p48 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 48123 | 48491 |
| YP_009274192.1 | NC_030914_p64 | hypothetical protein | phrog_22468 | unknown function | unknown function | -1 | 57102 | 57992 |
| YP_009274203.1 | NC_030914_p75 | hypothetical protein | phrog_27073 | unknown function | unknown function | -1 | 61644 | 62117 |
| YP_009274137.1 | NC_030914_p9 | terminase small subunit | phrog_6902 | terminase small subunit | head and packaging | 1 | 7341 | 8738 |
| YP_009274149.1 | NC_030914_p21 | head-to-tail connector protein | phrog_5299 | unknown function | unknown function | 1 | 19829 | 20320 |
| YP_009274218.1 | NC_030914_p90 | hypothetical protein | phrog_24128 | unknown function | unknown function | -1 | 70668 | 70979 |
| YP_009274153.1 | NC_030914_p25 | tail assembly chaperone | phrog_3096 | tail assembly chaperone | tail | 1 | 21889 | 22488 |
| YP_009274216.1 | NC_030914_p88 | hypothetical protein | phrog_6032 | unknown function | unknown function | -1 | 69218 | 70018 |
| YP_009274222.1 | NC_030914_p94 | hypothetical protein | phrog_10234 | unknown function | unknown function | -1 | 71777 | 71944 |
| YP_009274178.1 | NC_030914_p50 | hypothetical protein | phrog_9572 | sulfatase-modifying factor enzyme | other | -1 | 49733 | 49990 |
| YP_009274133.1 | NC_030914_p5 | hypothetical protein | phrog_27754 | unknown function | unknown function | -1 | 5540 | 5689 |
| YP_009274185.1 | NC_030914_p57 | hypothetical protein | phrog_7649 | unknown function | unknown function | -1 | 53222 | 53803 |
| YP_009274171.1 | NC_030914_p43 | hypothetical protein | phrog_28930 | unknown function | unknown function | -1 | 45547 | 45804 |
| YP_009274214.1 | NC_030914_p86 | hypothetical protein | phrog_7008 | unknown function | unknown function | -1 | 68142 | 68756 |
| YP_009274162.1 | NC_030914_p34 | lysin A | phrog_6985 | endolysin | lysis | 1 | 40464 | 41318 |
| YP_009274129.1 | NC_030914_p1 | hypothetical protein | phrog_24029 | unknown function | unknown function | -1 | 1857 | 2876 |
| YP_009274169.1 | NC_030914_p41 | hypothetical protein | phrog_15162 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 44724 | 44837 |
| YP_009274173.1 | NC_030914_p45 | nucleotide pyrophosphohydrolase | phrog_3301 | pyrophosphatase | other | -1 | 46643 | 47137 |
| YP_009274145.1 | NC_030914_p17 | head-to-tail connector protein | phrog_7074 | head-tail connector protein | connector | 1 | 18267 | 18458 |
| YP_009274206.1 | NC_030914_p78 | hypothetical protein | phrog_4480 | unknown function | unknown function | -1 | 62915 | 63202 |
| YP_009274141.1 | NC_030914_p13 | hypothetical protein | phrog_6679 | unknown function | unknown function | 1 | 14958 | 15266 |
| YP_009274163.1 | NC_030914_p35 | membrane protein | phrog_2272 | unknown function | unknown function | 1 | 41321 | 41773 |
| YP_009274219.1 | NC_030914_p91 | hypothetical protein | phrog_10987 | unknown function | unknown function | -1 | 70972 | 71085 |
| YP_009274157.1 | NC_030914_p29 | minor tail protein | phrog_4978 | tail protein | tail | 1 | 36765 | 38705 |
| YP_009274181.1 | NC_030914_p53 | hypothetical protein | phrog_22895 | unknown function | unknown function | -1 | 50776 | 51021 |
| YP_009274227.1 | NC_030914_p99 | hypothetical protein | phrog_24747 | unknown function | unknown function | -1 | 74208 | 74699 |
| YP_009274148.1 | NC_030914_p20 | head-to-tail connector protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 19335 | 19829 |
| YP_009274164.1 | NC_030914_p36 | membrane protein | phrog_5552 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 41739 | 42215 |
| YP_009274198.1 | NC_030914_p70 | hypothetical protein | phrog_27627 | unknown function | unknown function | -1 | 59504 | 59932 |
| YP_009274223.1 | NC_030914_p95 | hypothetical protein | phrog_6708 | unknown function | unknown function | -1 | 72176 | 73120 |
| YP_009274224.1 | NC_030914_p96 | hypothetical protein | phrog_26269 | unknown function | unknown function | -1 | 73317 | 73478 |
| YP_009274158.1 | NC_030914_p30 | hypothetical protein | phrog_8373 | unknown function | unknown function | 1 | 38715 | 38933 |
| YP_009274199.1 | NC_030914_p71 | hypothetical protein | phrog_25312 | unknown function | unknown function | -1 | 59932 | 60183 |
| YP_009274183.1 | NC_030914_p55 | hypothetical protein | phrog_37279 | unknown function | unknown function | -1 | 51267 | 51518 |
| YP_009274220.1 | NC_030914_p92 | hypothetical protein | phrog_26243 | unknown function | unknown function | -1 | 71082 | 71390 |
| YP_009274221.1 | NC_030914_p93 | hypothetical protein | phrog_22496 | unknown function | unknown function | -1 | 71423 | 71746 |
| YP_009274215.1 | NC_030914_p87 | hypothetical protein | phrog_7001 | unknown function | unknown function | -1 | 68756 | 69214 |
| YP_009274180.1 | NC_030914_p52 | HTH DNA binding domain protein | phrog_10045 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 50637 | 50792 |
| YP_009274186.1 | NC_030914_p58 | hypothetical protein | phrog_5686 | unknown function | unknown function | -1 | 53889 | 54944 |