Genomic map of Gordonia phage Orchid (NC_030915)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030915
Definition
Gordonia phage Orchid, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Orchidvirus; Gordonia virus Orchid.
DB of origin
REFSEQ
Length
80650
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
114
%GC
47
Number of singletons
53
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009274292.1 NC_030915_p65 ssDNA binding protein phrog_289 GTP-binding domain other -1 54683 55078
YP_009274288.1 NC_030915_p61 hypothetical protein phrog_16387 unknown function unknown function -1 52043 52345
YP_009274245.1 NC_030915_p18 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 14702 15196
YP_009274271.1 NC_030915_p44 hypothetical protein phrog_14812 unknown function unknown function -1 43836 44126
YP_009274285.1 NC_030915_p58 hypothetical protein singleton unknown function unknown function -1 50397 50621
YP_009274266.1 NC_030915_p39 lysin B phrog_102 endolysin lysis 1 40829 41551
YP_009274230.1 NC_030915_p3 DNA binding domain protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 3094 3456
YP_009274303.1 NC_030915_p76 hypothetical protein singleton unknown function unknown function -1 59013 59258
YP_009274299.1 NC_030915_p72 hypothetical protein singleton unknown function unknown function -1 57730 57894
YP_009274330.1 NC_030915_p103 hypothetical protein singleton unknown function unknown function -1 73973 74293
YP_009274263.1 NC_030915_p36 hypothetical protein singleton unknown function unknown function 1 38373 38726
YP_009274323.1 NC_030915_p96 hypothetical protein singleton unknown function unknown function -1 69514 69756
YP_009274290.1 NC_030915_p63 hypothetical protein singleton unknown function unknown function -1 53480 54187
YP_009274341.1 NC_030915_p114 hypothetical protein singleton unknown function unknown function -1 78898 79113
YP_009274274.1 NC_030915_p47 hypothetical protein singleton unknown function unknown function -1 44487 44732
YP_009274331.1 NC_030915_p104 hypothetical protein singleton unknown function unknown function -1 74867 75019
YP_009274268.1 NC_030915_p41 helicase phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41993 43222
YP_009274294.1 NC_030915_p67 hypothetical protein phrog_26737 unknown function unknown function -1 55443 55829
YP_009274247.1 NC_030915_p20 hypothetical protein singleton unknown function unknown function 1 15770 16126
YP_009274315.1 NC_030915_p88 hypothetical protein singleton unknown function unknown function -1 66201 66389
YP_009274260.1 NC_030915_p33 hypothetical protein singleton unknown function unknown function 1 36484 36828
YP_009274273.1 NC_030915_p46 hypothetical protein singleton unknown function unknown function -1 44314 44490
YP_009274297.1 NC_030915_p70 integrase phrog_1 integrase integration and excision -1 56267 57028
YP_009274296.1 NC_030915_p69 hypothetical protein phrog_31638 unknown function unknown function -1 56133 56270
YP_009274327.1 NC_030915_p100 hypothetical protein singleton unknown function unknown function -1 72661 72963
YP_009274257.1 NC_030915_p30 membrane protein phrog_565 holin lysis 1 35152 35535
YP_009274235.1 NC_030915_p8 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 4177 4995
YP_009274338.1 NC_030915_p111 hypothetical protein phrog_1221 unknown function unknown function -1 76870 77931
YP_009274279.1 NC_030915_p52 exonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 46101 46622
YP_009274337.1 NC_030915_p110 hypothetical protein singleton unknown function unknown function -1 76599 76763
YP_009274313.1 NC_030915_p86 helicase phrog_5424 ATPase other -1 63726 65321
YP_009274283.1 NC_030915_p56 DNA binding protein phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 48718 48939
YP_009274276.1 NC_030915_p49 hypothetical protein singleton unknown function unknown function -1 45155 45343
YP_009274259.1 NC_030915_p32 membrane protein singleton unknown function unknown function 1 35966 36484
YP_009274272.1 NC_030915_p45 hypothetical protein singleton unknown function unknown function -1 44123 44311
YP_009274270.1 NC_030915_p43 hypothetical protein singleton unknown function unknown function -1 43364 43609
YP_009274258.1 NC_030915_p31 membrane protein phrog_8672 unknown function unknown function 1 35532 35969
YP_009274254.1 NC_030915_p27 minor tail protein phrog_2689 minor tail protein tail 1 31352 33037
YP_009274321.1 NC_030915_p94 hypothetical protein phrog_658 unknown function unknown function -1 68760 69206
YP_009274295.1 NC_030915_p68 hypothetical protein singleton unknown function unknown function -1 55826 56149
YP_009274316.1 NC_030915_p89 hypothetical protein singleton unknown function unknown function -1 66389 66820
YP_009274239.1 NC_030915_p12 hypothetical protein phrog_20049 unknown function unknown function 1 10560 10772
YP_009274334.1 NC_030915_p107 hypothetical protein singleton unknown function unknown function -1 75836 76051
YP_009274309.1 NC_030915_p82 hypothetical protein singleton unknown function unknown function -1 62287 62625
YP_009274252.1 NC_030915_p25 tail protein phrog_5287 minor tail protein tail 1 26971 29601
YP_009274236.1 NC_030915_p9 terminase small subunit phrog_16015 terminase small subunit head and packaging 1 5068 6495
YP_009274255.1 NC_030915_p28 hypothetical protein singleton unknown function unknown function 1 33034 33285
YP_009274298.1 NC_030915_p71 hypothetical protein singleton unknown function unknown function -1 57081 57737
YP_009274310.1 NC_030915_p83 hypothetical protein singleton unknown function unknown function -1 62618 62914
YP_009274318.1 NC_030915_p91 hypothetical protein phrog_12293 unknown function unknown function -1 67672 68079
YP_009274304.1 NC_030915_p77 hypothetical protein singleton unknown function unknown function -1 59255 59467
YP_009274329.1 NC_030915_p102 hypothetical protein singleton unknown function unknown function -1 73322 73519
YP_009274332.1 NC_030915_p105 hypothetical protein phrog_16548 unknown function unknown function -1 75031 75399
YP_009274308.1 NC_030915_p81 hypothetical protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 60086 62290
YP_009274237.1 NC_030915_p10 terminase large subunit phrog_2 terminase large subunit head and packaging 1 6495 8519
YP_009274232.1 NC_030915_p5 hypothetical protein singleton unknown function unknown function -1 3673 3885
YP_009274314.1 NC_030915_p87 hypothetical protein singleton unknown function unknown function -1 65314 66204
YP_009274246.1 NC_030915_p19 hypothetical protein phrog_5299 unknown function unknown function 1 15196 15756
YP_009274280.1 NC_030915_p53 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 46753 47862
YP_009274281.1 NC_030915_p54 hypothetical protein singleton unknown function unknown function -1 47843 48049
YP_009274287.1 NC_030915_p60 HNH endonuclease phrog_9508 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51515 52042
YP_009274242.1 NC_030915_p15 capsid protein phrog_29 major head protein head and packaging 1 12504 13799
YP_009274251.1 NC_030915_p24 tape measure protein phrog_5448 tail length tape measure protein tail 1 18218 26965
YP_009274231.1 NC_030915_p4 hypothetical protein singleton unknown function unknown function -1 3475 3669
YP_009274233.1 NC_030915_p6 hypothetical protein singleton unknown function unknown function -1 3882 4019
YP_009274335.1 NC_030915_p108 hypothetical protein phrog_13174 unknown function unknown function -1 76054 76338
YP_009274261.1 NC_030915_p34 hypothetical protein singleton unknown function unknown function 1 36833 36994
YP_009274339.1 NC_030915_p112 hypothetical protein singleton unknown function unknown function -1 78096 78401
YP_009274340.1 NC_030915_p113 hypothetical protein singleton unknown function unknown function -1 78512 78811
YP_009274336.1 NC_030915_p109 hypothetical protein singleton unknown function unknown function -1 76341 76592
YP_009274256.1 NC_030915_p29 lysin A phrog_2998 endolysin lysis 1 33363 35138
YP_009274305.1 NC_030915_p78 hypothetical protein singleton unknown function unknown function -1 59467 59646
YP_009274244.1 NC_030915_p17 hypothetical protein phrog_195 head-tail adaptor connector 1 14202 14702
YP_009274249.1 NC_030915_p22 tail assembly chaperone phrog_3096 tail assembly chaperone tail 1 17278 18125
YP_009274262.1 NC_030915_p35 minor tail protein singleton unknown function unknown function 1 36987 38372
YP_009274324.1 NC_030915_p97 hypothetical protein phrog_15295 unknown function unknown function -1 71098 71802
YP_009274269.1 NC_030915_p42 hypothetical protein singleton unknown function unknown function -1 43206 43367
YP_009274319.1 NC_030915_p92 hypothetical protein singleton unknown function unknown function -1 68079 68273
YP_009274282.1 NC_030915_p55 ribonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 48054 48716
YP_009274320.1 NC_030915_p93 hypothetical protein singleton unknown function unknown function -1 68550 68759
YP_009274333.1 NC_030915_p106 hypothetical protein phrog_1587 unknown function unknown function -1 75402 75740
YP_009274326.1 NC_030915_p99 hypothetical protein phrog_19191 unknown function unknown function -1 72330 72590
YP_009274284.1 NC_030915_p57 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 48932 50422
YP_009274250.1 NC_030915_p23 tail assembly chaperone phrog_3096 tail assembly chaperone tail 1 17278 17868
YP_009274306.1 NC_030915_p79 hypothetical protein singleton unknown function unknown function -1 59639 59896
YP_009274289.1 NC_030915_p62 hypothetical protein phrog_14234 unknown function unknown function -1 52585 53355
YP_009274307.1 NC_030915_p80 DNA binding domain protein phrog_18600 DNA binding protein DNA, RNA and nucleotide metabolism -1 59893 60099
YP_009274302.1 NC_030915_p75 hypothetical protein phrog_21251 unknown function unknown function -1 58792 59013
YP_009274325.1 NC_030915_p98 hypothetical protein singleton unknown function unknown function -1 72032 72274
YP_009274264.1 NC_030915_p37 hypothetical protein phrog_644 unknown function unknown function 1 38736 39173
YP_009274311.1 NC_030915_p84 hypothetical protein singleton unknown function unknown function -1 62907 63083
YP_009274238.1 NC_030915_p11 portal protein phrog_113 portal protein head and packaging 1 8747 10516
YP_009274267.1 NC_030915_p40 hypothetical protein singleton unknown function unknown function -1 41667 41993
YP_009274317.1 NC_030915_p90 hypothetical protein singleton unknown function unknown function -1 66771 67361
YP_009274229.1 NC_030915_p2 HNH endonuclease phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 2780 3094
YP_009274277.1 NC_030915_p50 hypothetical protein phrog_7609 unknown function unknown function -1 45340 45729
YP_009274322.1 NC_030915_p95 hypothetical protein phrog_4392 unknown function unknown function -1 69206 69511
YP_009274286.1 NC_030915_p59 FAD-dependent thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 50618 51328
YP_009274243.1 NC_030915_p16 hypothetical protein phrog_15701 unknown function unknown function 1 13882 14172
YP_009274293.1 NC_030915_p66 hypothetical protein singleton unknown function unknown function -1 55075 55446
YP_009274253.1 NC_030915_p26 tail protein phrog_1887 tail protein tail 1 29598 31355
YP_009274278.1 NC_030915_p51 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation -1 45726 46097
YP_009274275.1 NC_030915_p48 MazG phrog_3301 pyrophosphatase other -1 44732 45154
YP_009274248.1 NC_030915_p21 major tail protein phrog_290 minor tail protein tail 1 16129 17151
YP_009274328.1 NC_030915_p101 hypothetical protein phrog_19191 unknown function unknown function -1 72953 73219
YP_009274300.1 NC_030915_p73 hypothetical protein singleton unknown function unknown function -1 57894 58079
YP_009274265.1 NC_030915_p38 minor tail protein singleton unknown function unknown function 1 39465 40820
YP_009274234.1 NC_030915_p7 hypothetical protein singleton unknown function unknown function -1 4016 4180
YP_009274228.1 NC_030915_p1 DNA primase phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 785 2767
YP_009274240.1 NC_030915_p13 capsid maturation protease phrog_976 head maturation protease head and packaging 1 10827 12002
YP_009274291.1 NC_030915_p64 HTH DNA binding domain protein phrog_15020 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 54189 54686
YP_009274241.1 NC_030915_p14 head decoration protein phrog_5455 head decoration head and packaging 1 12022 12489
YP_009274312.1 NC_030915_p85 hypothetical protein singleton unknown function unknown function -1 63235 63675
YP_009274301.1 NC_030915_p74 hypothetical protein phrog_5406 unknown function unknown function -1 58076 58669