Genomic map of Tsukamurella phage TPA4 (NC_030916)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030916
Definition
Tsukamurella phage TPA4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
56212
Host Name
Tsukamurella paurometabola
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
70.54
Number of singletons
35
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009274376.1 NC_030916_p35 hypothetical protein singleton unknown function unknown function -1 30775 30942
YP_009274417.1 NC_030916_p76 hypothetical protein phrog_28894 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 49037 51694
YP_009274388.1 NC_030916_p47 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 36087 36890
YP_009274401.1 NC_030916_p60 hypothetical protein phrog_20777 unknown function unknown function 1 42608 42820
YP_009274367.1 NC_030916_p26 structural protein singleton unknown function unknown function 1 23759 25357
YP_009274406.1 NC_030916_p65 hypothetical protein singleton unknown function unknown function -1 44357 44842
YP_009274411.1 NC_030916_p70 hypothetical protein phrog_2451 unknown function unknown function 1 45701 45991
YP_009274385.1 NC_030916_p44 hypothetical protein singleton unknown function unknown function 1 34941 35237
YP_009274396.1 NC_030916_p55 hypothetical protein singleton unknown function unknown function 1 40258 40635
YP_009274369.1 NC_030916_p28 hypothetical protein singleton unknown function unknown function 1 25836 26891
YP_009274423.1 NC_030916_p82 hypothetical protein singleton unknown function unknown function -1 54265 55047
YP_009274361.1 NC_030916_p20 hypothetical protein singleton unknown function unknown function 1 19528 19722
YP_009274409.1 NC_030916_p68 hypothetical protein singleton unknown function unknown function 1 45280 45519
YP_009274360.1 NC_030916_p19 hypothetical protein phrog_110 minor tail protein tail 1 17726 19462
YP_009274349.1 NC_030916_p8 hypothetical protein phrog_29 major head protein head and packaging 1 6373 7398
YP_009274353.1 NC_030916_p12 hypothetical protein phrog_123 tail terminator connector 1 8635 9036
YP_009274351.1 NC_030916_p10 hypothetical protein phrog_763 head-tail adaptor connector 1 7947 8351
YP_009274375.1 NC_030916_p34 hypothetical protein phrog_404 minor tail protein tail 1 30182 30700
YP_009274381.1 NC_030916_p40 hypothetical protein singleton unknown function unknown function -1 33956 34099
YP_009274366.1 NC_030916_p25 hypothetical protein singleton unknown function unknown function 1 23492 23755
YP_009274371.1 NC_030916_p30 hypothetical protein phrog_102 endolysin lysis 1 27688 28482
YP_009274390.1 NC_030916_p49 hypothetical protein phrog_210 unknown function unknown function 1 37276 38109
YP_009274386.1 NC_030916_p45 hypothetical protein phrog_1956 unknown function unknown function 1 35234 35554
YP_009274348.1 NC_030916_p7 hypothetical protein phrog_3583 head decoration head and packaging 1 5997 6371
YP_009274344.1 NC_030916_p3 portal protein phrog_104 portal protein head and packaging 1 2235 3725
YP_009274342.1 NC_030916_p1 hypothetical protein phrog_226 minor tail protein tail 1 75 497
YP_009274394.1 NC_030916_p53 hypothetical protein phrog_35236 unknown function unknown function 1 39393 39623
YP_009274397.1 NC_030916_p56 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 40632 41162
YP_009274410.1 NC_030916_p69 hypothetical protein singleton unknown function unknown function 1 45516 45704
YP_009274383.1 NC_030916_p42 hypothetical protein singleton unknown function unknown function 1 34301 34543
YP_009274415.1 NC_030916_p74 DNA methyltransferase phrog_116 DNA methyltransferase other 1 47059 48669
YP_009274392.1 NC_030916_p51 hypothetical protein singleton unknown function unknown function 1 38771 38914
YP_009274382.1 NC_030916_p41 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 34071 34304
YP_009274422.1 NC_030916_p81 hypothetical protein phrog_1581 unknown function unknown function 1 53987 54289
YP_009274356.1 NC_030916_p15 tail assembly protein phrog_17360 tail assembly protein tail 1 10600 11465
YP_009274354.1 NC_030916_p13 hypothetical protein phrog_117 major tail protein tail 1 9127 9984
YP_009274350.1 NC_030916_p9 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 7567 7953
YP_009274425.1 NC_030916_p84 hypothetical protein singleton unknown function unknown function 1 55475 55669
YP_009274393.1 NC_030916_p52 hypothetical protein singleton unknown function unknown function 1 38998 39378
YP_009274405.1 NC_030916_p64 hypothetical protein singleton unknown function unknown function 1 44205 44390
YP_009274363.1 NC_030916_p22 tail protein phrog_1565 minor tail protein tail 1 20165 21250
YP_009274352.1 NC_030916_p11 hypothetical protein phrog_387 neck protein connector 1 8351 8638
YP_009274420.1 NC_030916_p79 hypothetical protein phrog_16713 unknown function unknown function 1 52699 53697
YP_009274345.1 NC_030916_p4 capsid maturation protease phrog_13257 head maturation protease head and packaging 1 3732 4874
YP_009274402.1 NC_030916_p61 hypothetical protein phrog_22335 unknown function unknown function 1 42817 43089
YP_009274404.1 NC_030916_p63 hypothetical protein singleton unknown function unknown function 1 43645 44205
YP_009274419.1 NC_030916_p78 hypothetical protein singleton unknown function unknown function 1 52424 52702
YP_009274413.1 NC_030916_p72 WhiB family transcriptional regulator phrog_472 WhiB transcriptional factor transcription regulation 1 46359 46703
YP_009274378.1 NC_030916_p37 integrase phrog_1 integrase integration and excision -1 31376 32608
YP_009274379.1 NC_030916_p38 hypothetical protein phrog_12831 transcriptional repressor transcription regulation -1 32979 33404
YP_009274372.1 NC_030916_p31 lysin phrog_2998 endolysin lysis 1 28502 29614
YP_009274358.1 NC_030916_p17 tape measure protein singleton unknown function unknown function 1 11473 16632
YP_009274389.1 NC_030916_p48 hypothetical protein phrog_204 unknown function unknown function 1 36926 37252
YP_009274370.1 NC_030916_p29 hypothetical protein singleton unknown function unknown function 1 26891 27490
YP_009274395.1 NC_030916_p54 hypothetical protein phrog_474 phosphofructokinase other 1 39893 40261
YP_009274408.1 NC_030916_p67 hypothetical protein phrog_2857 tail fiber protein tail 1 44981 45280
YP_009274359.1 NC_030916_p18 hypothetical protein phrog_106 minor tail protein tail 1 16629 17726
YP_009274374.1 NC_030916_p33 hypothetical protein phrog_565 holin lysis 1 29799 30185
YP_009274387.1 NC_030916_p46 hypothetical protein singleton unknown function unknown function 1 35551 36090
YP_009274364.1 NC_030916_p23 hypothetical protein phrog_1736 minor tail protein tail 1 21250 21615
YP_009274347.1 NC_030916_p6 hypothetical protein phrog_1793 head scaffolding protein head and packaging 1 5313 5945
YP_009274373.1 NC_030916_p32 hypothetical protein singleton unknown function unknown function 1 29620 29796
YP_009274355.1 NC_030916_p14 hypothetical protein singleton unknown function unknown function -1 10033 10527
YP_009274365.1 NC_030916_p24 structural protein phrog_746 minor tail protein tail 1 21615 23492
YP_009274391.1 NC_030916_p50 hypothetical protein phrog_1911 unknown function unknown function 1 38139 38771
YP_009274412.1 NC_030916_p71 hypothetical protein singleton unknown function unknown function 1 45988 46362
YP_009274421.1 NC_030916_p80 hypothetical protein singleton unknown function unknown function 1 53694 53990
YP_009274357.1 NC_030916_p16 tail assembly protein phrog_17360 tail assembly protein tail 1 10600 11064
YP_009274414.1 NC_030916_p73 hypothetical protein singleton unknown function unknown function 1 46700 47062
YP_009274400.1 NC_030916_p59 hypothetical protein phrog_2233 unknown function unknown function 1 41974 42615
YP_009274368.1 NC_030916_p27 hypothetical protein phrog_644 unknown function unknown function 1 25382 25834
YP_009274399.1 NC_030916_p58 hypothetical protein singleton unknown function unknown function 1 41855 41971
YP_009274362.1 NC_030916_p21 hypothetical protein phrog_1697 minor tail protein tail 1 19719 20168
YP_009274403.1 NC_030916_p62 hypothetical protein phrog_10666 unknown function unknown function 1 43272 43652
YP_009274346.1 NC_030916_p5 hypothetical protein singleton unknown function unknown function 1 4871 5194
YP_009274380.1 NC_030916_p39 hypothetical protein singleton unknown function unknown function -1 33675 33860
YP_009274343.1 NC_030916_p2 large terminase subunit phrog_9 terminase large subunit head and packaging 1 526 2238
YP_009274377.1 NC_030916_p36 hypothetical protein singleton unknown function unknown function 1 31015 31287
YP_009274407.1 NC_030916_p66 hypothetical protein singleton unknown function unknown function 1 44841 44984
YP_009274384.1 NC_030916_p43 hypothetical protein singleton unknown function unknown function 1 34540 34899
YP_009274398.1 NC_030916_p57 hypothetical protein phrog_289 GTP-binding domain other 1 41159 41554
YP_009274416.1 NC_030916_p75 hypothetical protein singleton unknown function unknown function 1 48666 49040
YP_009274418.1 NC_030916_p77 hypothetical protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism 1 51945 52427
YP_009274424.1 NC_030916_p83 hypothetical protein singleton unknown function unknown function 1 55293 55478