| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030916 |
Definition |
Tsukamurella phage TPA4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
56212 |
Host Name |
Tsukamurella paurometabola |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
70.54 |
Number of singletons |
35 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009274376.1 | NC_030916_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30775 | 30942 |
| YP_009274417.1 | NC_030916_p76 | hypothetical protein | phrog_28894 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 49037 | 51694 |
| YP_009274388.1 | NC_030916_p47 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 36087 | 36890 |
| YP_009274401.1 | NC_030916_p60 | hypothetical protein | phrog_20777 | unknown function | unknown function | 1 | 42608 | 42820 |
| YP_009274367.1 | NC_030916_p26 | structural protein | singleton | unknown function | unknown function | 1 | 23759 | 25357 |
| YP_009274406.1 | NC_030916_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44357 | 44842 |
| YP_009274411.1 | NC_030916_p70 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 45701 | 45991 |
| YP_009274385.1 | NC_030916_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34941 | 35237 |
| YP_009274396.1 | NC_030916_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40258 | 40635 |
| YP_009274369.1 | NC_030916_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25836 | 26891 |
| YP_009274423.1 | NC_030916_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54265 | 55047 |
| YP_009274361.1 | NC_030916_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19528 | 19722 |
| YP_009274409.1 | NC_030916_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45280 | 45519 |
| YP_009274360.1 | NC_030916_p19 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 17726 | 19462 |
| YP_009274349.1 | NC_030916_p8 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 6373 | 7398 |
| YP_009274353.1 | NC_030916_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8635 | 9036 |
| YP_009274351.1 | NC_030916_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 7947 | 8351 |
| YP_009274375.1 | NC_030916_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 30182 | 30700 |
| YP_009274381.1 | NC_030916_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33956 | 34099 |
| YP_009274366.1 | NC_030916_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23492 | 23755 |
| YP_009274371.1 | NC_030916_p30 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 27688 | 28482 |
| YP_009274390.1 | NC_030916_p49 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 37276 | 38109 |
| YP_009274386.1 | NC_030916_p45 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 35234 | 35554 |
| YP_009274348.1 | NC_030916_p7 | hypothetical protein | phrog_3583 | head decoration | head and packaging | 1 | 5997 | 6371 |
| YP_009274344.1 | NC_030916_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2235 | 3725 |
| YP_009274342.1 | NC_030916_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 75 | 497 |
| YP_009274394.1 | NC_030916_p53 | hypothetical protein | phrog_35236 | unknown function | unknown function | 1 | 39393 | 39623 |
| YP_009274397.1 | NC_030916_p56 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40632 | 41162 |
| YP_009274410.1 | NC_030916_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45516 | 45704 |
| YP_009274383.1 | NC_030916_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34301 | 34543 |
| YP_009274415.1 | NC_030916_p74 | DNA methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 47059 | 48669 |
| YP_009274392.1 | NC_030916_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38771 | 38914 |
| YP_009274382.1 | NC_030916_p41 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34071 | 34304 |
| YP_009274422.1 | NC_030916_p81 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 53987 | 54289 |
| YP_009274356.1 | NC_030916_p15 | tail assembly protein | phrog_17360 | tail assembly protein | tail | 1 | 10600 | 11465 |
| YP_009274354.1 | NC_030916_p13 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 9127 | 9984 |
| YP_009274350.1 | NC_030916_p9 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 7567 | 7953 |
| YP_009274425.1 | NC_030916_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55475 | 55669 |
| YP_009274393.1 | NC_030916_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38998 | 39378 |
| YP_009274405.1 | NC_030916_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44205 | 44390 |
| YP_009274363.1 | NC_030916_p22 | tail protein | phrog_1565 | minor tail protein | tail | 1 | 20165 | 21250 |
| YP_009274352.1 | NC_030916_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8351 | 8638 |
| YP_009274420.1 | NC_030916_p79 | hypothetical protein | phrog_16713 | unknown function | unknown function | 1 | 52699 | 53697 |
| YP_009274345.1 | NC_030916_p4 | capsid maturation protease | phrog_13257 | head maturation protease | head and packaging | 1 | 3732 | 4874 |
| YP_009274402.1 | NC_030916_p61 | hypothetical protein | phrog_22335 | unknown function | unknown function | 1 | 42817 | 43089 |
| YP_009274404.1 | NC_030916_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43645 | 44205 |
| YP_009274419.1 | NC_030916_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52424 | 52702 |
| YP_009274413.1 | NC_030916_p72 | WhiB family transcriptional regulator | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 46359 | 46703 |
| YP_009274378.1 | NC_030916_p37 | integrase | phrog_1 | integrase | integration and excision | -1 | 31376 | 32608 |
| YP_009274379.1 | NC_030916_p38 | hypothetical protein | phrog_12831 | transcriptional repressor | transcription regulation | -1 | 32979 | 33404 |
| YP_009274372.1 | NC_030916_p31 | lysin | phrog_2998 | endolysin | lysis | 1 | 28502 | 29614 |
| YP_009274358.1 | NC_030916_p17 | tape measure protein | singleton | unknown function | unknown function | 1 | 11473 | 16632 |
| YP_009274389.1 | NC_030916_p48 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 36926 | 37252 |
| YP_009274370.1 | NC_030916_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26891 | 27490 |
| YP_009274395.1 | NC_030916_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 39893 | 40261 |
| YP_009274408.1 | NC_030916_p67 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 44981 | 45280 |
| YP_009274359.1 | NC_030916_p18 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 16629 | 17726 |
| YP_009274374.1 | NC_030916_p33 | hypothetical protein | phrog_565 | holin | lysis | 1 | 29799 | 30185 |
| YP_009274387.1 | NC_030916_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35551 | 36090 |
| YP_009274364.1 | NC_030916_p23 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 21250 | 21615 |
| YP_009274347.1 | NC_030916_p6 | hypothetical protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 5313 | 5945 |
| YP_009274373.1 | NC_030916_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29620 | 29796 |
| YP_009274355.1 | NC_030916_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10033 | 10527 |
| YP_009274365.1 | NC_030916_p24 | structural protein | phrog_746 | minor tail protein | tail | 1 | 21615 | 23492 |
| YP_009274391.1 | NC_030916_p50 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 38139 | 38771 |
| YP_009274412.1 | NC_030916_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45988 | 46362 |
| YP_009274421.1 | NC_030916_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53694 | 53990 |
| YP_009274357.1 | NC_030916_p16 | tail assembly protein | phrog_17360 | tail assembly protein | tail | 1 | 10600 | 11064 |
| YP_009274414.1 | NC_030916_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46700 | 47062 |
| YP_009274400.1 | NC_030916_p59 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 41974 | 42615 |
| YP_009274368.1 | NC_030916_p27 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 25382 | 25834 |
| YP_009274399.1 | NC_030916_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41855 | 41971 |
| YP_009274362.1 | NC_030916_p21 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 19719 | 20168 |
| YP_009274403.1 | NC_030916_p62 | hypothetical protein | phrog_10666 | unknown function | unknown function | 1 | 43272 | 43652 |
| YP_009274346.1 | NC_030916_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4871 | 5194 |
| YP_009274380.1 | NC_030916_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33675 | 33860 |
| YP_009274343.1 | NC_030916_p2 | large terminase subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 526 | 2238 |
| YP_009274377.1 | NC_030916_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31015 | 31287 |
| YP_009274407.1 | NC_030916_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44841 | 44984 |
| YP_009274384.1 | NC_030916_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34540 | 34899 |
| YP_009274398.1 | NC_030916_p57 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 41159 | 41554 |
| YP_009274416.1 | NC_030916_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48666 | 49040 |
| YP_009274418.1 | NC_030916_p77 | hypothetical protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 51945 | 52427 |
| YP_009274424.1 | NC_030916_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55293 | 55478 |