Genomic map of Pseudomonas phage JBD93 (NC_030918)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030918
Definition
Pseudomonas phage JBD93, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus.
DB of origin
REFSEQ
Length
36629
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
64.29
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009274626.1 NC_030918_p38 hypothetical protein phrog_4833 unknown function unknown function 1 20949 21389
YP_009274639.1 NC_030918_p51 hypothetical protein phrog_1196 tail assembly chaperone tail 1 32385 32603
YP_009274593.1 NC_030918_p5 transposase phrog_310 transposase integration and excision 1 2050 4119
YP_009274632.1 NC_030918_p44 hypothetical protein phrog_1442 tail assembly chaperone tail 1 23415 23912
YP_009274591.1 NC_030918_p3 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1414 1848
YP_009274631.1 NC_030918_p43 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 22638 23411
YP_009274616.1 NC_030918_p28 DNA-binding protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12280 12780
YP_009274605.1 NC_030918_p17 hypothetical protein phrog_3652 unknown function unknown function 1 8575 8844
YP_009274637.1 NC_030918_p49 hypothetical protein phrog_778 tail assembly protein tail 1 31319 32140
YP_009274590.1 NC_030918_p2 DNA-binding protein phrog_769 transcriptional repressor transcription regulation 1 1055 1411
YP_009274596.1 NC_030918_p8 hypothetical protein phrog_3190 unknown function unknown function 1 5620 6255
YP_009274600.1 NC_030918_p12 host-nuclease inhibitor protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7060 7578
YP_009274634.1 NC_030918_p46 hypothetical protein phrog_687 structural protein head and packaging 1 27745 28701
YP_009274636.1 NC_030918_p48 hypothetical protein phrog_1082 tail assembly protein tail 1 29626 31329
YP_009274619.1 NC_030918_p31 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 16142 17428
YP_009274627.1 NC_030918_p39 hypothetical protein phrog_3376 unknown function unknown function 1 21389 21556
YP_009274594.1 NC_030918_p6 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 4134 4886
YP_009274604.1 NC_030918_p16 hypothetical protein phrog_3223 unknown function unknown function 1 8366 8572
YP_009274599.1 NC_030918_p11 hypothetical protein phrog_2043 unknown function unknown function 1 6777 7043
YP_009274622.1 NC_030918_p34 hypothetical protein phrog_3865 unknown function unknown function 1 18423 18647
YP_009274601.1 NC_030918_p13 host nuclease inhibitor protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7580 7858
YP_009274617.1 NC_030918_p29 hypothetical protein phrog_38 terminase large subunit head and packaging 1 12777 14552
YP_009274602.1 NC_030918_p14 hypothetical protein phrog_7895 unknown function unknown function 1 7860 8081
YP_009274595.1 NC_030918_p7 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 4883 5548
YP_009274598.1 NC_030918_p10 hypothetical protein phrog_2119 unknown function unknown function 1 6356 6769
YP_009274628.1 NC_030918_p40 hypothetical protein phrog_195 head-tail adaptor connector 1 21553 21969
YP_009274589.1 NC_030918_p1 c repressor phrog_4 transcriptional repressor transcription regulation -1 172 885
YP_009274643.1 NC_030918_p55 hypothetical protein phrog_2623 unknown function unknown function 1 36317 36541
YP_009274615.1 NC_030918_p27 hypothetical protein phrog_1103 unknown function unknown function 1 12083 12271
YP_009274603.1 NC_030918_p15 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 8083 8364
YP_009274618.1 NC_030918_p30 portal protein phrog_113 portal protein head and packaging 1 14562 16142
YP_009274630.1 NC_030918_p42 hypothetical protein phrog_3129 unknown function unknown function 1 22427 22612
YP_009274614.1 NC_030918_p26 hypothetical protein phrog_8661 unknown function unknown function 1 11959 12078
YP_009274624.1 NC_030918_p36 protease (I) and scaffold (Z) protein phrog_328 head maturation protease head and packaging 1 18867 19964
YP_009274620.1 NC_030918_p32 capsid and scaffold protein phrog_26 tail completion or Neck1 protein connector 1 17428 17895
YP_009274621.1 NC_030918_p33 hypothetical protein phrog_9439 unknown function unknown function 1 18007 18429
YP_009274612.1 NC_030918_p24 hypothetical protein phrog_4057 unknown function unknown function 1 11332 11574
YP_009274592.1 NC_030918_p4 hypothetical protein phrog_4468 unknown function unknown function 1 1848 2057
YP_009274609.1 NC_030918_p21 hypothetical protein phrog_3648 unknown function unknown function 1 10154 10501
YP_009274635.1 NC_030918_p47 hypothetical protein phrog_687 structural protein head and packaging 1 28703 29626
YP_009274607.1 NC_030918_p19 hypothetical protein phrog_286 unknown function unknown function 1 9208 9615
YP_009274625.1 NC_030918_p37 major capsid protein phrog_371 major head protein head and packaging 1 19968 20882
YP_009274613.1 NC_030918_p25 hypothetical protein phrog_2975 Rz-like spanin lysis 1 11571 11972
YP_009274608.1 NC_030918_p20 integral membrane protein phrog_836 late transcriptional activator transcription regulation 1 9602 10051
YP_009274606.1 NC_030918_p18 hypothetical protein phrog_4093 unknown function unknown function 1 8915 9211
YP_009274623.1 NC_030918_p35 hypothetical protein phrog_10291 unknown function unknown function -1 18743 18868
YP_009274638.1 NC_030918_p50 hypothetical protein phrog_1180 tail assembly chaperone tail 1 32149 32388
YP_009274597.1 NC_030918_p9 hypothetical protein phrog_3765 unknown function unknown function 1 6240 6356
YP_009274633.1 NC_030918_p45 tail length tape-measure protein phrog_2335 tail length tape measure protein tail 1 24039 27737
YP_009274642.1 NC_030918_p54 hypothetical protein phrog_2432 unknown function unknown function 1 35969 36238
YP_009274610.1 NC_030918_p22 hypothetical protein phrog_1024 unknown function unknown function 1 10494 10916
YP_009274629.1 NC_030918_p41 hypothetical protein phrog_209 portal protein head and packaging 1 21966 22439
YP_009274611.1 NC_030918_p23 capsid and scaffold protein phrog_873 endolysin head and packaging 1 10916 11332
YP_009274641.1 NC_030918_p53 hypothetical protein phrog_2875 virion structural protein head and packaging 1 34797 35948
YP_009274640.1 NC_030918_p52 hypothetical protein phrog_1101 tail protein tail 1 32593 34800