| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030918 |
Definition |
Pseudomonas phage JBD93, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36629 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
64.29 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009274626.1 | NC_030918_p38 | hypothetical protein | phrog_4833 | unknown function | unknown function | 1 | 20949 | 21389 |
| YP_009274639.1 | NC_030918_p51 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32385 | 32603 |
| YP_009274593.1 | NC_030918_p5 | transposase | phrog_310 | transposase | integration and excision | 1 | 2050 | 4119 |
| YP_009274632.1 | NC_030918_p44 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23415 | 23912 |
| YP_009274591.1 | NC_030918_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1414 | 1848 |
| YP_009274631.1 | NC_030918_p43 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22638 | 23411 |
| YP_009274616.1 | NC_030918_p28 | DNA-binding protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12280 | 12780 |
| YP_009274605.1 | NC_030918_p17 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 8575 | 8844 |
| YP_009274637.1 | NC_030918_p49 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31319 | 32140 |
| YP_009274590.1 | NC_030918_p2 | DNA-binding protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1055 | 1411 |
| YP_009274596.1 | NC_030918_p8 | hypothetical protein | phrog_3190 | unknown function | unknown function | 1 | 5620 | 6255 |
| YP_009274600.1 | NC_030918_p12 | host-nuclease inhibitor protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7060 | 7578 |
| YP_009274634.1 | NC_030918_p46 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 27745 | 28701 |
| YP_009274636.1 | NC_030918_p48 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29626 | 31329 |
| YP_009274619.1 | NC_030918_p31 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16142 | 17428 |
| YP_009274627.1 | NC_030918_p39 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21389 | 21556 |
| YP_009274594.1 | NC_030918_p6 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4134 | 4886 |
| YP_009274604.1 | NC_030918_p16 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 8366 | 8572 |
| YP_009274599.1 | NC_030918_p11 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6777 | 7043 |
| YP_009274622.1 | NC_030918_p34 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 18423 | 18647 |
| YP_009274601.1 | NC_030918_p13 | host nuclease inhibitor protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7580 | 7858 |
| YP_009274617.1 | NC_030918_p29 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 12777 | 14552 |
| YP_009274602.1 | NC_030918_p14 | hypothetical protein | phrog_7895 | unknown function | unknown function | 1 | 7860 | 8081 |
| YP_009274595.1 | NC_030918_p7 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4883 | 5548 |
| YP_009274598.1 | NC_030918_p10 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6356 | 6769 |
| YP_009274628.1 | NC_030918_p40 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 21553 | 21969 |
| YP_009274589.1 | NC_030918_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 172 | 885 |
| YP_009274643.1 | NC_030918_p55 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36317 | 36541 |
| YP_009274615.1 | NC_030918_p27 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12083 | 12271 |
| YP_009274603.1 | NC_030918_p15 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8083 | 8364 |
| YP_009274618.1 | NC_030918_p30 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 14562 | 16142 |
| YP_009274630.1 | NC_030918_p42 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22427 | 22612 |
| YP_009274614.1 | NC_030918_p26 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 11959 | 12078 |
| YP_009274624.1 | NC_030918_p36 | protease (I) and scaffold (Z) protein | phrog_328 | head maturation protease | head and packaging | 1 | 18867 | 19964 |
| YP_009274620.1 | NC_030918_p32 | capsid and scaffold protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17428 | 17895 |
| YP_009274621.1 | NC_030918_p33 | hypothetical protein | phrog_9439 | unknown function | unknown function | 1 | 18007 | 18429 |
| YP_009274612.1 | NC_030918_p24 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 11332 | 11574 |
| YP_009274592.1 | NC_030918_p4 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 1848 | 2057 |
| YP_009274609.1 | NC_030918_p21 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 10154 | 10501 |
| YP_009274635.1 | NC_030918_p47 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28703 | 29626 |
| YP_009274607.1 | NC_030918_p19 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9208 | 9615 |
| YP_009274625.1 | NC_030918_p37 | major capsid protein | phrog_371 | major head protein | head and packaging | 1 | 19968 | 20882 |
| YP_009274613.1 | NC_030918_p25 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11571 | 11972 |
| YP_009274608.1 | NC_030918_p20 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9602 | 10051 |
| YP_009274606.1 | NC_030918_p18 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 8915 | 9211 |
| YP_009274623.1 | NC_030918_p35 | hypothetical protein | phrog_10291 | unknown function | unknown function | -1 | 18743 | 18868 |
| YP_009274638.1 | NC_030918_p50 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32149 | 32388 |
| YP_009274597.1 | NC_030918_p9 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6240 | 6356 |
| YP_009274633.1 | NC_030918_p45 | tail length tape-measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 24039 | 27737 |
| YP_009274642.1 | NC_030918_p54 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 35969 | 36238 |
| YP_009274610.1 | NC_030918_p22 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 10494 | 10916 |
| YP_009274629.1 | NC_030918_p41 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 21966 | 22439 |
| YP_009274611.1 | NC_030918_p23 | capsid and scaffold protein | phrog_873 | endolysin | head and packaging | 1 | 10916 | 11332 |
| YP_009274641.1 | NC_030918_p53 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 34797 | 35948 |
| YP_009274640.1 | NC_030918_p52 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32593 | 34800 |