| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030923 |
Definition |
Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kantovirus; Pseudomonas virus C171. |
DB of origin |
REFSEQ |
Length |
45417 |
Host Name |
Pseudomonas putida |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
60.35 |
Number of singletons |
17 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009275044.1 | NC_030923_p26 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 23737 | 24933 |
| YP_009275050.1 | NC_030923_p32 | hypothetical protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30483 | 31487 |
| YP_009275047.1 | NC_030923_p29 | hypothetical protein | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 25584 | 26546 |
| YP_009275042.1 | NC_030923_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22648 | 22767 |
| YP_009275033.1 | NC_030923_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17543 | 17809 |
| YP_009275039.1 | NC_030923_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21452 | 21820 |
| YP_009275048.1 | NC_030923_p30 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 27258 | 29612 |
| YP_009275065.1 | NC_030923_p47 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 41361 | 42350 |
| YP_009275053.1 | NC_030923_p35 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 32349 | 32726 |
| YP_009275034.1 | NC_030923_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18440 | 18595 |
| YP_009275061.1 | NC_030923_p43 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 38226 | 38645 |
| YP_009275032.1 | NC_030923_p14 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 16701 | 17177 |
| YP_009275054.1 | NC_030923_p36 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 32729 | 33691 |
| YP_009275036.1 | NC_030923_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18771 | 18986 |
| YP_009275063.1 | NC_030923_p45 | hypothetical protein | phrog_449 | head-tail adaptor | connector | 1 | 38993 | 40507 |
| YP_009275021.1 | NC_030923_p3 | hypothetical protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 3174 | 6968 |
| YP_009275030.1 | NC_030923_p12 | hypothetical protein | phrog_13935 | unknown function | unknown function | 1 | 14563 | 15090 |
| YP_009275031.1 | NC_030923_p13 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 16411 | 16698 |
| YP_009275041.1 | NC_030923_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22251 | 22655 |
| YP_009275035.1 | NC_030923_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18592 | 18774 |
| YP_009275049.1 | NC_030923_p31 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 29667 | 30479 |
| YP_009275043.1 | NC_030923_p25 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 22733 | 23683 |
| YP_009275025.1 | NC_030923_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11294 | 11509 |
| YP_009275045.1 | NC_030923_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24935 | 25174 |
| YP_009275040.1 | NC_030923_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21838 | 22254 |
| YP_009275046.1 | NC_030923_p28 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 25177 | 25584 |
| YP_009275026.1 | NC_030923_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11522 | 13402 |
| YP_009275051.1 | NC_030923_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31646 | 31885 |
| YP_009275020.1 | NC_030923_p2 | hypothetical protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 431 | 3160 |
| YP_009275019.1 | NC_030923_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 83 | 421 |
| YP_009275027.1 | NC_030923_p9 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 13412 | 13813 |
| YP_009275058.1 | NC_030923_p40 | hypothetical protein | phrog_23988 | unknown function | unknown function | 1 | 34615 | 34812 |
| YP_009275022.1 | NC_030923_p4 | hypothetical protein | phrog_1640 | tail protein | tail | 1 | 6978 | 9152 |
| YP_009275059.1 | NC_030923_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34809 | 34970 |
| YP_009275023.1 | NC_030923_p5 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 9162 | 9455 |
| YP_009275052.1 | NC_030923_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31887 | 32174 |
| YP_009275066.1 | NC_030923_p48 | hypothetical protein | phrog_446 | tail protein | tail | 1 | 42399 | 42953 |
| YP_009275056.1 | NC_030923_p38 | holin | phrog_7045 | holin | lysis | 1 | 34164 | 34433 |
| YP_009275055.1 | NC_030923_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 33760 | 34167 |
| YP_009275037.1 | NC_030923_p19 | hypothetical protein | phrog_13313 | unknown function | unknown function | 1 | 19431 | 21269 |
| YP_009275038.1 | NC_030923_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21275 | 21412 |
| YP_009275024.1 | NC_030923_p6 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 9465 | 11279 |
| YP_009275067.1 | NC_030923_p49 | hypothetical protein | phrog_457 | tail protein | tail | 1 | 42962 | 45295 |
| YP_009275064.1 | NC_030923_p46 | hypothetical protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 40507 | 41340 |
| YP_009275029.1 | NC_030923_p11 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 14012 | 14554 |
| YP_009275060.1 | NC_030923_p42 | hypothetical protein | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 34978 | 37413 |
| YP_009275062.1 | NC_030923_p44 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 38638 | 38991 |
| YP_009275057.1 | NC_030923_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34433 | 34615 |
| YP_009275028.1 | NC_030923_p10 | hypothetical protein | phrog_20 | holin | lysis | 1 | 13816 | 14028 |