Genomic map of Pseudomonas phage YMC11/06/C171_PPU_BP (NC_030923)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030923
Definition
Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kantovirus; Pseudomonas virus C171.
DB of origin
REFSEQ
Length
45417
Host Name
Pseudomonas putida
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
60.35
Number of singletons
17
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009275044.1 NC_030923_p26 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 23737 24933
YP_009275050.1 NC_030923_p32 hypothetical protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 30483 31487
YP_009275047.1 NC_030923_p29 hypothetical protein phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 25584 26546
YP_009275042.1 NC_030923_p24 hypothetical protein singleton unknown function unknown function 1 22648 22767
YP_009275033.1 NC_030923_p15 hypothetical protein singleton unknown function unknown function 1 17543 17809
YP_009275039.1 NC_030923_p21 hypothetical protein singleton unknown function unknown function 1 21452 21820
YP_009275048.1 NC_030923_p30 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 27258 29612
YP_009275065.1 NC_030923_p47 capsid protein phrog_267 major head protein head and packaging 1 41361 42350
YP_009275053.1 NC_030923_p35 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 32349 32726
YP_009275034.1 NC_030923_p16 hypothetical protein singleton unknown function unknown function 1 18440 18595
YP_009275061.1 NC_030923_p43 hypothetical protein phrog_5167 unknown function unknown function 1 38226 38645
YP_009275032.1 NC_030923_p14 hypothetical protein phrog_1448 unknown function unknown function 1 16701 17177
YP_009275054.1 NC_030923_p36 hypothetical protein phrog_221 metallo-phosphoesterase other 1 32729 33691
YP_009275036.1 NC_030923_p18 hypothetical protein singleton unknown function unknown function 1 18771 18986
YP_009275063.1 NC_030923_p45 hypothetical protein phrog_449 head-tail adaptor connector 1 38993 40507
YP_009275021.1 NC_030923_p3 hypothetical protein phrog_342 internal virion protein with endolysin domain head and packaging 1 3174 6968
YP_009275030.1 NC_030923_p12 hypothetical protein phrog_13935 unknown function unknown function 1 14563 15090
YP_009275031.1 NC_030923_p13 hypothetical protein phrog_5722 unknown function unknown function 1 16411 16698
YP_009275041.1 NC_030923_p23 hypothetical protein singleton unknown function unknown function 1 22251 22655
YP_009275035.1 NC_030923_p17 hypothetical protein singleton unknown function unknown function 1 18592 18774
YP_009275049.1 NC_030923_p31 hypothetical protein phrog_862 unknown function unknown function 1 29667 30479
YP_009275043.1 NC_030923_p25 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 22733 23683
YP_009275025.1 NC_030923_p7 hypothetical protein singleton unknown function unknown function 1 11294 11509
YP_009275045.1 NC_030923_p27 hypothetical protein singleton unknown function unknown function 1 24935 25174
YP_009275040.1 NC_030923_p22 hypothetical protein singleton unknown function unknown function 1 21838 22254
YP_009275046.1 NC_030923_p28 hypothetical protein phrog_2563 unknown function unknown function 1 25177 25584
YP_009275026.1 NC_030923_p8 hypothetical protein singleton unknown function unknown function 1 11522 13402
YP_009275051.1 NC_030923_p33 hypothetical protein singleton unknown function unknown function 1 31646 31885
YP_009275020.1 NC_030923_p2 hypothetical protein phrog_2083 internal virion lysozyme motif head and packaging 1 431 3160
YP_009275019.1 NC_030923_p1 hypothetical protein singleton unknown function unknown function 1 83 421
YP_009275027.1 NC_030923_p9 hypothetical protein phrog_1804 Rz-like spanin lysis 1 13412 13813
YP_009275058.1 NC_030923_p40 hypothetical protein phrog_23988 unknown function unknown function 1 34615 34812
YP_009275022.1 NC_030923_p4 hypothetical protein phrog_1640 tail protein tail 1 6978 9152
YP_009275059.1 NC_030923_p41 hypothetical protein singleton unknown function unknown function 1 34809 34970
YP_009275023.1 NC_030923_p5 DNA maturase A phrog_891 terminase small subunit head and packaging 1 9162 9455
YP_009275052.1 NC_030923_p34 hypothetical protein singleton unknown function unknown function 1 31887 32174
YP_009275066.1 NC_030923_p48 hypothetical protein phrog_446 tail protein tail 1 42399 42953
YP_009275056.1 NC_030923_p38 holin phrog_7045 holin lysis 1 34164 34433
YP_009275055.1 NC_030923_p37 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 33760 34167
YP_009275037.1 NC_030923_p19 hypothetical protein phrog_13313 unknown function unknown function 1 19431 21269
YP_009275038.1 NC_030923_p20 hypothetical protein singleton unknown function unknown function -1 21275 21412
YP_009275024.1 NC_030923_p6 DNA maturase B phrog_38 terminase large subunit head and packaging 1 9465 11279
YP_009275067.1 NC_030923_p49 hypothetical protein phrog_457 tail protein tail 1 42962 45295
YP_009275064.1 NC_030923_p46 hypothetical protein phrog_1018 head scaffolding protein head and packaging 1 40507 41340
YP_009275029.1 NC_030923_p11 hypothetical protein phrog_7 endolysin lysis 1 14012 14554
YP_009275060.1 NC_030923_p42 hypothetical protein phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 34978 37413
YP_009275062.1 NC_030923_p44 hypothetical protein phrog_3112 virion structural protein head and packaging 1 38638 38991
YP_009275057.1 NC_030923_p39 hypothetical protein singleton unknown function unknown function 1 34433 34615
YP_009275028.1 NC_030923_p10 hypothetical protein phrog_20 holin lysis 1 13816 14028