| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030929 |
Definition |
Pseudomonas phage JBD44, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49033 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
58.49 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009275488.1 | NC_030929_p1 | hypothetical protein | phrog_16986 | unknown function | unknown function | 1 | 56 | 802 |
| YP_009275531.1 | NC_030929_p44 | hypothetical protein | phrog_3580 | unknown function | unknown function | 1 | 32323 | 32649 |
| YP_009275493.1 | NC_030929_p6 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 3354 | 3770 |
| YP_009275525.1 | NC_030929_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25838 | 25990 |
| YP_009275550.1 | NC_030929_p63 | hypothetical protein | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 40648 | 41274 |
| YP_009275511.1 | NC_030929_p24 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | 1 | 13476 | 14570 |
| YP_009275539.1 | NC_030929_p52 | hypothetical protein | phrog_5614 | unknown function | unknown function | -1 | 36443 | 36928 |
| YP_009275544.1 | NC_030929_p57 | hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 37976 | 38587 |
| YP_009275507.1 | NC_030929_p20 | methyl-accepting chemotaxis protein | phrog_146 | portal protein | head and packaging | 1 | 9470 | 10840 |
| YP_009275547.1 | NC_030929_p60 | hypothetical protein | phrog_16171 | unknown function | unknown function | -1 | 39931 | 40101 |
| YP_009275513.1 | NC_030929_p26 | hypothetical protein | phrog_17702 | unknown function | unknown function | 1 | 15056 | 15298 |
| YP_009275562.1 | NC_030929_p75 | hypothetical protein | phrog_9037 | unknown function | unknown function | -1 | 46159 | 46422 |
| YP_009275500.1 | NC_030929_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5884 | 6093 |
| YP_009275506.1 | NC_030929_p19 | hypothetical protein | phrog_10752 | unknown function | unknown function | 1 | 9270 | 9467 |
| YP_009275533.1 | NC_030929_p46 | integrase | phrog_1 | integrase | integration and excision | -1 | 33061 | 34278 |
| YP_009275563.1 | NC_030929_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46578 | 46724 |
| YP_009275556.1 | NC_030929_p69 | hypothetical protein | phrog_3483 | unknown function | unknown function | -1 | 43767 | 44297 |
| YP_009275552.1 | NC_030929_p65 | TolA protein | phrog_1376 | unknown function | unknown function | -1 | 42039 | 43103 |
| YP_009275529.1 | NC_030929_p42 | lytic enzyme | phrog_181 | endolysin | lysis | 1 | 31332 | 31961 |
| YP_009275517.1 | NC_030929_p30 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 16457 | 16831 |
| YP_009275503.1 | NC_030929_p16 | hypothetical protein | phrog_513 | transposase | integration and excision | 1 | 6905 | 7534 |
| YP_009275499.1 | NC_030929_p12 | hypothetical protein | phrog_3412 | unknown function | unknown function | 1 | 5325 | 5906 |
| YP_009275522.1 | NC_030929_p35 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 21911 | 22402 |
| YP_009275528.1 | NC_030929_p41 | poly(beta-D-mannuronate) O-acetylase | singleton | unknown function | unknown function | -1 | 29757 | 31238 |
| YP_009275526.1 | NC_030929_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26476 | 28638 |
| YP_009275560.1 | NC_030929_p73 | hypothetical protein | phrog_924 | unknown function | unknown function | -1 | 45321 | 45569 |
| YP_009275505.1 | NC_030929_p18 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 8014 | 9270 |
| YP_009275489.1 | NC_030929_p2 | hypothetical protein | phrog_5810 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 795 | 1643 |
| YP_009275510.1 | NC_030929_p23 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 13011 | 13460 |
| YP_009275536.1 | NC_030929_p49 | hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 35300 | 35764 |
| YP_009275490.1 | NC_030929_p3 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 1633 | 3033 |
| YP_009275509.1 | NC_030929_p22 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 11730 | 13007 |
| YP_009275518.1 | NC_030929_p31 | hypothetical protein | phrog_853 | major tail protein | tail | 1 | 16846 | 17841 |
| YP_009275515.1 | NC_030929_p28 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 15683 | 16021 |
| YP_009275566.1 | NC_030929_p79 | hypothetical protein | phrog_8790 | restriction endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47994 | 48608 |
| YP_009275541.1 | NC_030929_p54 | hypothetical protein | phrog_7427 | unknown function | unknown function | -1 | 37103 | 37393 |
| YP_009275553.1 | NC_030929_p66 | hypothetical protein | phrog_5864 | unknown function | unknown function | -1 | 43146 | 43274 |
| YP_009275564.1 | NC_030929_p77 | cI repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 47009 | 47683 |
| YP_009275519.1 | NC_030929_p32 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 17838 | 18455 |
| YP_009275548.1 | NC_030929_p61 | hypothetical protein | phrog_6604 | unknown function | unknown function | -1 | 40073 | 40276 |
| YP_009275555.1 | NC_030929_p68 | hypothetical protein | phrog_13871 | unknown function | unknown function | -1 | 43381 | 43770 |
| YP_009275498.1 | NC_030929_p11 | hypothetical protein | phrog_21368 | unknown function | unknown function | 1 | 4993 | 5328 |
| YP_009275554.1 | NC_030929_p67 | hypothetical protein | phrog_21577 | unknown function | unknown function | -1 | 43271 | 43384 |
| YP_009275491.1 | NC_030929_p4 | hypothetical protein | phrog_8532 | unknown function | unknown function | 1 | 3030 | 3149 |
| YP_009275549.1 | NC_030929_p62 | hypothetical protein | phrog_22237 | unknown function | unknown function | -1 | 40313 | 40651 |
| YP_009275492.1 | NC_030929_p5 | hypothetical protein | phrog_13309 | unknown function | unknown function | 1 | 3146 | 3361 |
| YP_009275538.1 | NC_030929_p51 | hypothetical protein | phrog_343 | unknown function | unknown function | -1 | 36171 | 36440 |
| YP_009275551.1 | NC_030929_p64 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 41278 | 42030 |
| YP_009275542.1 | NC_030929_p55 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 37466 | 37669 |
| YP_009275495.1 | NC_030929_p8 | hypothetical protein | phrog_21511 | unknown function | unknown function | 1 | 4027 | 4185 |
| YP_009275524.1 | NC_030929_p37 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 22786 | 25515 |
| YP_009275545.1 | NC_030929_p58 | hypothetical protein | phrog_4887 | unknown function | unknown function | -1 | 38580 | 38861 |
| YP_009275508.1 | NC_030929_p21 | hypothetical protein | phrog_758 | head morphogenesis | head and packaging | 1 | 10875 | 11726 |
| YP_009275512.1 | NC_030929_p25 | hypothetical protein | phrog_5877 | unknown function | unknown function | 1 | 14581 | 14973 |
| YP_009275543.1 | NC_030929_p56 | hypothetical protein | phrog_23330 | unknown function | unknown function | -1 | 37666 | 37983 |
| YP_009275567.1 | NC_030929_p80 | hypothetical protein | phrog_725 | CII-like regulator | transcription regulation | 1 | 48605 | 48895 |
| YP_009275521.1 | NC_030929_p34 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 21460 | 21927 |
| YP_009275502.1 | NC_030929_p15 | hypothetical protein | phrog_13520 | unknown function | unknown function | 1 | 6642 | 6914 |
| YP_009275540.1 | NC_030929_p53 | hypothetical protein | phrog_5315 | unknown function | unknown function | -1 | 36913 | 37059 |
| YP_009275532.1 | NC_030929_p45 | hypothetical protein | phrog_3944 | unknown function | unknown function | 1 | 32685 | 32861 |
| YP_009275523.1 | NC_030929_p36 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 22407 | 22814 |
| YP_009275497.1 | NC_030929_p10 | protein NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4412 | 4996 |
| YP_009275546.1 | NC_030929_p59 | hypothetical protein | phrog_3956 | unknown function | unknown function | -1 | 38861 | 39934 |
| YP_009275535.1 | NC_030929_p48 | hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 34989 | 35303 |
| YP_009275559.1 | NC_030929_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45013 | 45195 |
| YP_009275504.1 | NC_030929_p17 | hypothetical protein | phrog_546 | unknown function | unknown function | 1 | 7566 | 8033 |
| YP_009275494.1 | NC_030929_p7 | hypothetical protein | phrog_2529 | unknown function | unknown function | 1 | 3767 | 4030 |
| YP_009275527.1 | NC_030929_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28627 | 29745 |
| YP_009275501.1 | NC_030929_p14 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 6307 | 6639 |
| YP_009275558.1 | NC_030929_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44668 | 44976 |
| YP_009275516.1 | NC_030929_p29 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 16023 | 16460 |
| YP_009275537.1 | NC_030929_p50 | hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 35761 | 36171 |
| YP_009275565.1 | NC_030929_p78 | Cro | phrog_35 | transcriptional repressor | transcription regulation | 1 | 47771 | 47992 |
| YP_009275514.1 | NC_030929_p27 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 15285 | 15686 |
| YP_009275496.1 | NC_030929_p9 | hypothetical protein | phrog_26412 | unknown function | unknown function | 1 | 4182 | 4415 |
| YP_009275557.1 | NC_030929_p70 | hypothetical protein | phrog_4801 | unknown function | unknown function | -1 | 44294 | 44659 |
| YP_009275530.1 | NC_030929_p43 | hypothetical protein | phrog_3774 | unknown function | unknown function | 1 | 31958 | 32326 |
| YP_009275561.1 | NC_030929_p74 | hypothetical protein | phrog_31114 | unknown function | unknown function | -1 | 45604 | 46041 |
| YP_009275534.1 | NC_030929_p47 | hypothetical protein | phrog_4389 | unknown function | unknown function | -1 | 34558 | 34992 |
| YP_009275520.1 | NC_030929_p33 | hypothetical protein | phrog_1107 | tail length tape measure protein | tail | 1 | 18455 | 21463 |