Genomic map of Pseudomonas phage JBD44 (NC_030929)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030929
Definition
Pseudomonas phage JBD44, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49033
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
58.49
Number of singletons
8
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009275488.1 NC_030929_p1 hypothetical protein phrog_16986 unknown function unknown function 1 56 802
YP_009275531.1 NC_030929_p44 hypothetical protein phrog_3580 unknown function unknown function 1 32323 32649
YP_009275493.1 NC_030929_p6 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 3354 3770
YP_009275525.1 NC_030929_p38 hypothetical protein singleton unknown function unknown function -1 25838 25990
YP_009275550.1 NC_030929_p63 hypothetical protein phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 40648 41274
YP_009275511.1 NC_030929_p24 hypothetical protein phrog_771 virion structural protein head and packaging 1 13476 14570
YP_009275539.1 NC_030929_p52 hypothetical protein phrog_5614 unknown function unknown function -1 36443 36928
YP_009275544.1 NC_030929_p57 hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 37976 38587
YP_009275507.1 NC_030929_p20 methyl-accepting chemotaxis protein phrog_146 portal protein head and packaging 1 9470 10840
YP_009275547.1 NC_030929_p60 hypothetical protein phrog_16171 unknown function unknown function -1 39931 40101
YP_009275513.1 NC_030929_p26 hypothetical protein phrog_17702 unknown function unknown function 1 15056 15298
YP_009275562.1 NC_030929_p75 hypothetical protein phrog_9037 unknown function unknown function -1 46159 46422
YP_009275500.1 NC_030929_p13 hypothetical protein singleton unknown function unknown function -1 5884 6093
YP_009275506.1 NC_030929_p19 hypothetical protein phrog_10752 unknown function unknown function 1 9270 9467
YP_009275533.1 NC_030929_p46 integrase phrog_1 integrase integration and excision -1 33061 34278
YP_009275563.1 NC_030929_p76 hypothetical protein singleton unknown function unknown function 1 46578 46724
YP_009275556.1 NC_030929_p69 hypothetical protein phrog_3483 unknown function unknown function -1 43767 44297
YP_009275552.1 NC_030929_p65 TolA protein phrog_1376 unknown function unknown function -1 42039 43103
YP_009275529.1 NC_030929_p42 lytic enzyme phrog_181 endolysin lysis 1 31332 31961
YP_009275517.1 NC_030929_p30 hypothetical protein phrog_782 unknown function unknown function 1 16457 16831
YP_009275503.1 NC_030929_p16 hypothetical protein phrog_513 transposase integration and excision 1 6905 7534
YP_009275499.1 NC_030929_p12 hypothetical protein phrog_3412 unknown function unknown function 1 5325 5906
YP_009275522.1 NC_030929_p35 hypothetical protein phrog_396 minor tail protein tail 1 21911 22402
YP_009275528.1 NC_030929_p41 poly(beta-D-mannuronate) O-acetylase singleton unknown function unknown function -1 29757 31238
YP_009275526.1 NC_030929_p39 hypothetical protein singleton unknown function unknown function 1 26476 28638
YP_009275560.1 NC_030929_p73 hypothetical protein phrog_924 unknown function unknown function -1 45321 45569
YP_009275505.1 NC_030929_p18 terminase large subunit phrog_2 terminase large subunit head and packaging 1 8014 9270
YP_009275489.1 NC_030929_p2 hypothetical protein phrog_5810 replication initiation protein DNA, RNA and nucleotide metabolism 1 795 1643
YP_009275510.1 NC_030929_p23 hypothetical protein phrog_766 head decoration head and packaging 1 13011 13460
YP_009275536.1 NC_030929_p49 hypothetical protein phrog_4029 unknown function unknown function -1 35300 35764
YP_009275490.1 NC_030929_p3 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 1633 3033
YP_009275509.1 NC_030929_p22 hypothetical protein phrog_760 unknown function unknown function 1 11730 13007
YP_009275518.1 NC_030929_p31 hypothetical protein phrog_853 major tail protein tail 1 16846 17841
YP_009275515.1 NC_030929_p28 hypothetical protein phrog_797 unknown function unknown function 1 15683 16021
YP_009275566.1 NC_030929_p79 hypothetical protein phrog_8790 restriction endonuclease DNA, RNA and nucleotide metabolism 1 47994 48608
YP_009275541.1 NC_030929_p54 hypothetical protein phrog_7427 unknown function unknown function -1 37103 37393
YP_009275553.1 NC_030929_p66 hypothetical protein phrog_5864 unknown function unknown function -1 43146 43274
YP_009275564.1 NC_030929_p77 cI repressor protein phrog_4 transcriptional repressor transcription regulation -1 47009 47683
YP_009275519.1 NC_030929_p32 hypothetical protein phrog_791 unknown function unknown function 1 17838 18455
YP_009275548.1 NC_030929_p61 hypothetical protein phrog_6604 unknown function unknown function -1 40073 40276
YP_009275555.1 NC_030929_p68 hypothetical protein phrog_13871 unknown function unknown function -1 43381 43770
YP_009275498.1 NC_030929_p11 hypothetical protein phrog_21368 unknown function unknown function 1 4993 5328
YP_009275554.1 NC_030929_p67 hypothetical protein phrog_21577 unknown function unknown function -1 43271 43384
YP_009275491.1 NC_030929_p4 hypothetical protein phrog_8532 unknown function unknown function 1 3030 3149
YP_009275549.1 NC_030929_p62 hypothetical protein phrog_22237 unknown function unknown function -1 40313 40651
YP_009275492.1 NC_030929_p5 hypothetical protein phrog_13309 unknown function unknown function 1 3146 3361
YP_009275538.1 NC_030929_p51 hypothetical protein phrog_343 unknown function unknown function -1 36171 36440
YP_009275551.1 NC_030929_p64 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 41278 42030
YP_009275542.1 NC_030929_p55 hypothetical protein phrog_2730 unknown function unknown function -1 37466 37669
YP_009275495.1 NC_030929_p8 hypothetical protein phrog_21511 unknown function unknown function 1 4027 4185
YP_009275524.1 NC_030929_p37 tail fiber protein phrog_469 tail protein tail 1 22786 25515
YP_009275545.1 NC_030929_p58 hypothetical protein phrog_4887 unknown function unknown function -1 38580 38861
YP_009275508.1 NC_030929_p21 hypothetical protein phrog_758 head morphogenesis head and packaging 1 10875 11726
YP_009275512.1 NC_030929_p25 hypothetical protein phrog_5877 unknown function unknown function 1 14581 14973
YP_009275543.1 NC_030929_p56 hypothetical protein phrog_23330 unknown function unknown function -1 37666 37983
YP_009275567.1 NC_030929_p80 hypothetical protein phrog_725 CII-like regulator transcription regulation 1 48605 48895
YP_009275521.1 NC_030929_p34 hypothetical protein phrog_384 virion structural protein head and packaging 1 21460 21927
YP_009275502.1 NC_030929_p15 hypothetical protein phrog_13520 unknown function unknown function 1 6642 6914
YP_009275540.1 NC_030929_p53 hypothetical protein phrog_5315 unknown function unknown function -1 36913 37059
YP_009275532.1 NC_030929_p45 hypothetical protein phrog_3944 unknown function unknown function 1 32685 32861
YP_009275523.1 NC_030929_p36 hypothetical protein phrog_329 minor tail protein tail 1 22407 22814
YP_009275497.1 NC_030929_p10 protein NinG phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 4412 4996
YP_009275546.1 NC_030929_p59 hypothetical protein phrog_3956 unknown function unknown function -1 38861 39934
YP_009275535.1 NC_030929_p48 hypothetical protein phrog_5086 unknown function unknown function -1 34989 35303
YP_009275559.1 NC_030929_p72 hypothetical protein singleton unknown function unknown function 1 45013 45195
YP_009275504.1 NC_030929_p17 hypothetical protein phrog_546 unknown function unknown function 1 7566 8033
YP_009275494.1 NC_030929_p7 hypothetical protein phrog_2529 unknown function unknown function 1 3767 4030
YP_009275527.1 NC_030929_p40 hypothetical protein singleton unknown function unknown function -1 28627 29745
YP_009275501.1 NC_030929_p14 hypothetical protein phrog_2359 holin lysis 1 6307 6639
YP_009275558.1 NC_030929_p71 hypothetical protein singleton unknown function unknown function -1 44668 44976
YP_009275516.1 NC_030929_p29 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 16023 16460
YP_009275537.1 NC_030929_p50 hypothetical protein phrog_4029 unknown function unknown function -1 35761 36171
YP_009275565.1 NC_030929_p78 Cro phrog_35 transcriptional repressor transcription regulation 1 47771 47992
YP_009275514.1 NC_030929_p27 hypothetical protein phrog_786 unknown function unknown function 1 15285 15686
YP_009275496.1 NC_030929_p9 hypothetical protein phrog_26412 unknown function unknown function 1 4182 4415
YP_009275557.1 NC_030929_p70 hypothetical protein phrog_4801 unknown function unknown function -1 44294 44659
YP_009275530.1 NC_030929_p43 hypothetical protein phrog_3774 unknown function unknown function 1 31958 32326
YP_009275561.1 NC_030929_p74 hypothetical protein phrog_31114 unknown function unknown function -1 45604 46041
YP_009275534.1 NC_030929_p47 hypothetical protein phrog_4389 unknown function unknown function -1 34558 34992
YP_009275520.1 NC_030929_p33 hypothetical protein phrog_1107 tail length tape measure protein tail 1 18455 21463