Genomic map of Staphylococcus phage Stau2 (NC_030933)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030933
Definition
Staphylococcus phage Stau2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus; Staphylococcus virus Stau2.
DB of origin
REFSEQ
Length
133798
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
177
%GC
29.97
Number of singletons
0
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009275864.1 NC_030933_p107 hypothetical protein phrog_2726 unknown function unknown function 1 96179 96814
YP_009275823.1 NC_030933_p66 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 62894 63925
YP_009275842.1 NC_030933_p85 DNA polymerase phrog_5995 DNA polymerase DNA, RNA and nucleotide metabolism 1 81113 81769
YP_009275895.1 NC_030933_p138 hypothetical protein phrog_17700 unknown function unknown function 1 111244 111396
YP_009275825.1 NC_030933_p68 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 64186 66120
YP_009275820.1 NC_030933_p63 cytosine specific DNA methyltransferase phrog_67 DNA methyltransferase other 1 61199 61918
YP_009275887.1 NC_030933_p130 hypothetical protein phrog_18429 unknown function unknown function 1 107086 107424
YP_009275849.1 NC_030933_p92 sigma factor phrog_1025 RNA polymerase sigma factor transcription regulation 1 86414 87175
YP_009275804.1 NC_030933_p47 structural protein phrog_1073 unknown function unknown function 1 42535 43056
YP_009275877.1 NC_030933_p120 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 102176 102907
YP_009275846.1 NC_030933_p89 endonuclease phrog_4645 endonuclease DNA, RNA and nucleotide metabolism 1 84138 85109
YP_009275832.1 NC_030933_p75 ribonucleotide-diphosphate reductase subunit alpha phrog_12229 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 70559 72292
YP_009275885.1 NC_030933_p128 hypothetical protein phrog_16557 unknown function unknown function 1 106420 106599
YP_009275927.1 NC_030933_p170 ribonuclease H phrog_25616 Rnase H DNA, RNA and nucleotide metabolism -1 129849 130067
YP_009275911.1 NC_030933_p154 ArpR DNA-binding protein phrog_14652 DNA binding protein DNA, RNA and nucleotide metabolism -1 117867 118652
YP_009275932.1 NC_030933_p175 amidase phrog_12367 endolysin lysis -1 131445 132203
YP_009275807.1 NC_030933_p50 structural protein phrog_2386 virion structural protein head and packaging 1 44832 47534
YP_009275889.1 NC_030933_p132 hypothetical protein phrog_13773 unknown function unknown function 1 107882 108160
YP_009275785.1 NC_030933_p28 hypothetical protein phrog_772 tail fiber protein tail 1 20216 20965
YP_009275920.1 NC_030933_p163 LysM domain-containing protein phrog_1274 lysM motif protein lysis -1 127019 127192
YP_009275799.1 NC_030933_p42 tail lysin phrog_8949 unknown function unknown function 1 34918 35742
YP_009275833.1 NC_030933_p76 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 72587 73069
YP_009275836.1 NC_030933_p79 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 74360 74692
YP_009275890.1 NC_030933_p133 hypothetical protein phrog_1709 unknown function unknown function 1 108287 108568
YP_009275876.1 NC_030933_p119 hypothetical protein phrog_13842 unknown function unknown function 1 101926 102207
YP_009275863.1 NC_030933_p106 transposase domain containing protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 95725 96168
YP_009275776.1 NC_030933_p19 portal protein phrog_1108 portal protein head and packaging 1 11323 11697
YP_009275875.1 NC_030933_p118 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 101220 101939
YP_009275845.1 NC_030933_p88 recombinase A phrog_8290 RecA or Sak4, length ? other 1 83585 83809
YP_009275847.1 NC_030933_p90 recombination protein phrog_97 UvsX-like recombinase other 1 85257 86183
YP_009275873.1 NC_030933_p116 hypothetical protein phrog_11752 unknown function unknown function 1 100457 101008
YP_009275897.1 NC_030933_p140 hypothetical protein phrog_8830 unknown function unknown function 1 112189 112530
YP_009275852.1 NC_030933_p95 tail morphogenetic protein phrog_1696 major tail protein tail 1 88465 88677
YP_009275814.1 NC_030933_p57 DNA helicase phrog_14619 DNA helicase DNA, RNA and nucleotide metabolism 1 55594 56049
YP_009275803.1 NC_030933_p46 structural protein phrog_1011 virion structural protein head and packaging 1 41684 42535
YP_009275909.1 NC_030933_p152 hydrolase domain protein phrog_4178 major tail protein tail -1 117237 117629
YP_009275806.1 NC_030933_p49 tail protein phrog_6 baseplate wedge subunit tail 1 43775 44821
YP_009275828.1 NC_030933_p71 hypothetical protein phrog_1291 unknown function unknown function 1 67800 68156
YP_009275929.1 NC_030933_p172 hypothetical protein phrog_2896 unknown function unknown function -1 130262 130909
YP_009275777.1 NC_030933_p20 portal protein phrog_15361 portal protein head and packaging 1 11702 12583
YP_009275923.1 NC_030933_p166 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 127782 128411
YP_009275924.1 NC_030933_p167 phosphatase phrog_21952 RNA ligase DNA, RNA and nucleotide metabolism -1 128413 128772
YP_009275850.1 NC_030933_p93 structural protein phrog_1240 Ig domain containing protein other 1 87282 87914
YP_009275797.1 NC_030933_p40 tail lysin phrog_1047 tail associated lysin tail 1 30547 33534
YP_009275805.1 NC_030933_p48 baseplate protein phrog_975 baseplate protein tail 1 43056 43760
YP_009275778.1 NC_030933_p21 transposase phrog_506 transposase integration and excision 1 13078 14331
YP_009275831.1 NC_030933_p74 ribonucleoside-diphosphate reductase R2/beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 69206 70543
YP_009275792.1 NC_030933_p35 capsid protein phrog_985 virion structural protein head and packaging 1 27304 27642
YP_009275865.1 NC_030933_p108 hypothetical protein phrog_2863 unknown function unknown function 1 96850 97248
YP_009275835.1 NC_030933_p78 hypothetical protein phrog_2797 unknown function unknown function 1 74062 74388
YP_009275762.1 NC_030933_p5 hypothetical protein phrog_4526 unknown function unknown function -1 2970 3233
YP_009275856.1 NC_030933_p99 hypothetical protein phrog_2892 unknown function unknown function 1 91056 91385
YP_009275903.1 NC_030933_p146 sensor protein phrog_98 unknown function unknown function -1 114657 115010
YP_009275919.1 NC_030933_p162 hypothetical protein phrog_2811 virion structural protein head and packaging -1 126742 127005
YP_009275881.1 NC_030933_p124 nuclease phrog_13453 nuclease DNA, RNA and nucleotide metabolism 1 105480 105713
YP_009275772.1 NC_030933_p15 hypothetical protein phrog_1917 virion structural protein head and packaging 1 8664 9464
YP_009275818.1 NC_030933_p61 hypothetical protein phrog_11461 unknown function unknown function 1 60617 60874
YP_009275779.1 NC_030933_p22 portal protein phrog_11117 portal protein head and packaging 1 14621 15325
YP_009275795.1 NC_030933_p38 hypothetical protein phrog_1038 tail assembly chaperone tail 1 29509 29937
YP_009275810.1 NC_030933_p53 hypothetical protein phrog_1074 unknown function unknown function 1 51689 51859
YP_009275918.1 NC_030933_p161 hypothetical protein phrog_3200 unknown function unknown function -1 124624 126663
YP_009275892.1 NC_030933_p135 hypothetical protein phrog_2601 unknown function unknown function 1 110391 110705
YP_009275764.1 NC_030933_p7 hypothetical protein phrog_1321 unknown function unknown function 1 3741 4022
YP_009275798.1 NC_030933_p41 tail lysin phrog_10341 endolysin lysis 1 33990 34859
YP_009275760.1 NC_030933_p3 hypothetical protein phrog_937 hemolysin other -1 2261 2593
YP_009275784.1 NC_030933_p27 hypothetical protein phrog_1205 unknown function unknown function 1 19973 20206
YP_009275917.1 NC_030933_p160 hypothetical protein phrog_2966 unknown function unknown function -1 124463 124624
YP_009275791.1 NC_030933_p34 major tail sheath protein phrog_279 tail sheath tail 1 25481 27241
YP_009275914.1 NC_030933_p157 hypothetical protein phrog_2861 unknown function unknown function -1 123433 123768
YP_009275878.1 NC_030933_p121 hypothetical protein phrog_13526 unknown function unknown function 1 103048 103398
YP_009275902.1 NC_030933_p145 hypothetical protein phrog_2884 unknown function unknown function -1 114421 114660
YP_009275768.1 NC_030933_p11 hypothetical protein phrog_22897 unknown function unknown function 1 5333 5569
YP_009275886.1 NC_030933_p129 hypothetical protein phrog_16583 unknown function unknown function 1 106613 106951
YP_009275869.1 NC_030933_p112 hypothetical protein phrog_3143 unknown function unknown function 1 98568 98882
YP_009275861.1 NC_030933_p104 hypothetical protein phrog_1007 unknown function unknown function 1 94459 95190
YP_009275837.1 NC_030933_p80 hypothetical protein phrog_1054 unknown function unknown function 1 74899 75501
YP_009275790.1 NC_030933_p33 hypothetical protein phrog_1151 unknown function unknown function 1 25252 25458
YP_009275815.1 NC_030933_p58 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 56276 57589
YP_009275819.1 NC_030933_p62 hypothetical protein phrog_12198 unknown function unknown function 1 60944 61189
YP_009275774.1 NC_030933_p17 hypothetical protein phrog_3094 unknown function unknown function 1 10139 10906
YP_009275773.1 NC_030933_p16 hypothetical protein phrog_1116 unknown function unknown function 1 9617 10096
YP_009275826.1 NC_030933_p69 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 66104 66697
YP_009275934.1 NC_030933_p177 holTW phrog_962 holin lysis -1 133134 133634
YP_009275872.1 NC_030933_p115 pentapeptide repeat protein phrog_923 unknown function unknown function 1 99626 100438
YP_009275800.1 NC_030933_p43 tail lysin phrog_1015 tail protein with lysin activity tail 1 35794 38226
YP_009275808.1 NC_030933_p51 structural protein phrog_1394 virion structural protein head and packaging 1 47620 48159
YP_009275862.1 NC_030933_p105 structural protein phrog_1104 virion structural protein head and packaging 1 95208 95669
YP_009275891.1 NC_030933_p134 hypothetical protein phrog_12518 unknown function unknown function 1 109378 109779
YP_009275874.1 NC_030933_p117 hypothetical protein phrog_3453 unknown function unknown function 1 100996 101220
YP_009275882.1 NC_030933_p125 TreB phrog_3204 unknown function unknown function 1 105716 105901
YP_009275817.1 NC_030933_p60 helicase/primase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 59169 60617
YP_009275901.1 NC_030933_p144 hypothetical protein phrog_9042 unknown function unknown function -1 114058 114405
YP_009275879.1 NC_030933_p122 hypothetical protein phrog_19178 unknown function unknown function 1 103420 103797
YP_009275782.1 NC_030933_p25 hypothetical protein phrog_1133 unknown function unknown function 1 17459 18394
YP_009275767.1 NC_030933_p10 hypothetical protein phrog_38778 unknown function unknown function 1 4950 5123
YP_009275829.1 NC_030933_p72 hypothetical protein phrog_1095 unknown function unknown function 1 68156 68593
YP_009275813.1 NC_030933_p56 hypothetical protein phrog_2691 tail fiber protein tail 1 54142 55506
YP_009275793.1 NC_030933_p36 hypothetical protein phrog_1905 unknown function unknown function 1 28606 29055
YP_009275834.1 NC_030933_p77 ribonucleotide-diphosphate reductase subunit alpha phrog_3844 NrdA-like aerobic NDP reductase large subunit moron, auxiliary metabolic gene and host takeover 1 73123 74049
YP_009275910.1 NC_030933_p153 hypothetical protein phrog_12286 unknown function unknown function -1 117650 117874
YP_009275880.1 NC_030933_p123 homing endonuclease phrog_9084 homing endonuclease DNA, RNA and nucleotide metabolism 1 103895 104440
YP_009275925.1 NC_030933_p168 hypothetical protein phrog_2995 unknown function unknown function -1 128894 129544
YP_009275789.1 NC_030933_p32 hypothetical protein phrog_1000 unknown function unknown function 1 24416 25252
YP_009275838.1 NC_030933_p81 integration host factor phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 75510 75821
YP_009275822.1 NC_030933_p65 adenine-specific methyltransferase phrog_67 DNA methyltransferase other 1 62135 62824
YP_009275843.1 NC_030933_p86 hypothetical protein phrog_1069 unknown function unknown function 1 81794 82276
YP_009275893.1 NC_030933_p136 hypothetical protein phrog_15099 unknown function unknown function 1 110775 110933
YP_009275759.1 NC_030933_p2 hypothetical protein phrog_1215 unknown function unknown function -1 2035 2250
YP_009275913.1 NC_030933_p156 hypothetical protein phrog_19864 unknown function unknown function -1 119422 123228
YP_009275827.1 NC_030933_p70 primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 66711 67787
YP_009275816.1 NC_030933_p59 Rep protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 57599 59185
YP_009275854.1 NC_030933_p97 hypothetical protein phrog_2721 unknown function unknown function 1 89028 89798
YP_009275868.1 NC_030933_p111 hypothetical protein phrog_2988 unknown function unknown function 1 98202 98504
YP_009275775.1 NC_030933_p18 hypothetical protein phrog_3937 unknown function unknown function 1 10967 11326
YP_009275839.1 NC_030933_p82 transposase phrog_506 transposase integration and excision 1 76113 77219
YP_009275912.1 NC_030933_p155 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 119041 119406
YP_009275771.1 NC_030933_p14 terminase large subunit phrog_675 terminase large subunit head and packaging 1 7866 8648
YP_009275930.1 NC_030933_p173 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 130893 131108
YP_009275786.1 NC_030933_p29 transposase phrog_506 transposase integration and excision 1 21402 22610
YP_009275859.1 NC_030933_p102 hypothetical protein phrog_2356 unknown function unknown function 1 92726 93232
YP_009275848.1 NC_030933_p91 hypothetical protein phrog_1089 unknown function unknown function 1 86176 86529
YP_009275894.1 NC_030933_p137 hypothetical protein phrog_10311 unknown function unknown function 1 110917 111168
YP_009275933.1 NC_030933_p176 N-acetylmuramoyl-L-alanine amidase phrog_833 endolysin lysis -1 132217 133134
YP_009275769.1 NC_030933_p12 terminase large subunit phrog_12876 terminase large subunit head and packaging 1 5624 6271
YP_009275926.1 NC_030933_p169 hypothetical protein phrog_3093 unknown function unknown function -1 129510 129773
YP_009275840.1 NC_030933_p83 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 77477 80002
YP_009275824.1 NC_030933_p67 hypothetical protein phrog_2773 unknown function unknown function 1 63927 64193
YP_009275884.1 NC_030933_p127 hypothetical protein phrog_17940 unknown function unknown function 1 106207 106407
YP_009275858.1 NC_030933_p101 hypothetical protein phrog_984 unknown function unknown function 1 91984 92745
YP_009275916.1 NC_030933_p159 hypothetical protein phrog_3048 unknown function unknown function -1 124278 124463
YP_009275896.1 NC_030933_p139 hypothetical protein phrog_14210 unknown function unknown function 1 111761 112051
YP_009275844.1 NC_030933_p87 hypothetical protein phrog_2672 unknown function unknown function 1 82347 83522
YP_009275802.1 NC_030933_p45 glycerophosphoryl diester phosphodiesterase phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 39116 41572
YP_009275931.1 NC_030933_p174 hypothetical protein phrog_2770 unknown function unknown function -1 131122 131343
YP_009275860.1 NC_030933_p103 hypothetical protein phrog_1113 unknown function unknown function 1 93232 94086
YP_009275866.1 NC_030933_p109 hypothetical protein phrog_3157 unknown function unknown function 1 97389 97640
YP_009275900.1 NC_030933_p143 hypothetical protein phrog_419 unknown function unknown function -1 113859 114137
YP_009275888.1 NC_030933_p131 hypothetical protein phrog_9163 unknown function unknown function 1 107424 107732
YP_009275783.1 NC_030933_p26 major capsid protein phrog_752 major head protein head and packaging 1 18478 19869
YP_009275811.1 NC_030933_p54 structural protein phrog_2665 virion structural protein head and packaging 1 51837 53762
YP_009275908.1 NC_030933_p151 hypothetical protein phrog_2981 unknown function unknown function -1 116660 117220
YP_009275761.1 NC_030933_p4 hypothetical protein phrog_1481 unknown function unknown function -1 2600 2932
YP_009275899.1 NC_030933_p142 hypothetical protein phrog_8830 unknown function unknown function 1 112873 113217
YP_009275788.1 NC_030933_p31 hypothetical protein phrog_1127 unknown function unknown function 1 23777 24397
YP_009275857.1 NC_030933_p100 hypothetical protein phrog_1080 unknown function unknown function 1 91455 91991
YP_009275821.1 NC_030933_p64 hypothetical protein phrog_9725 unknown function unknown function 1 61887 62135
YP_009275765.1 NC_030933_p8 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 4019 4432
YP_009275801.1 NC_030933_p44 tail lysin phrog_2677 tail protein with lysin activity tail 1 38232 39125
YP_009275796.1 NC_030933_p39 tail morphogenetic protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 30029 30487
YP_009275883.1 NC_030933_p126 hypothetical protein phrog_6981 unknown function unknown function 1 105967 106206
YP_009275921.1 NC_030933_p164 hypothetical protein phrog_2642 unknown function unknown function -1 127167 127625
YP_009275794.1 NC_030933_p37 hypothetical protein phrog_2754 virion structural protein head and packaging 1 29112 29420
YP_009275928.1 NC_030933_p171 hypothetical protein phrog_2706 unknown function unknown function -1 130060 130248
YP_009275871.1 NC_030933_p114 hypothetical protein phrog_13381 unknown function unknown function 1 99265 99759
YP_009275830.1 NC_030933_p73 resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 68583 69191
YP_009275915.1 NC_030933_p158 hypothetical protein phrog_2708 nucleotide kinase other -1 123743 124159
YP_009275905.1 NC_030933_p148 hypothetical protein phrog_2532 unknown function unknown function -1 115393 115611
YP_009275855.1 NC_030933_p98 DNA repair exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 89791 91044
YP_009275812.1 NC_030933_p55 hypothetical protein phrog_2671 tail fiber protein tail 1 53780 54136
YP_009275781.1 NC_030933_p24 prohead protease phrog_1028 head maturation protease head and packaging 1 16684 17445
YP_009275922.1 NC_030933_p165 MbpB phrog_33985 unknown function unknown function -1 127586 127798
YP_009275758.1 NC_030933_p1 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 906 1121
YP_009275763.1 NC_030933_p6 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 3377 3763
YP_009275853.1 NC_030933_p96 hypothetical protein phrog_2673 unknown function unknown function 1 88774 89028
YP_009275770.1 NC_030933_p13 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6831 7772
YP_009275809.1 NC_030933_p52 adsorption associated tail protein phrog_877 unknown function unknown function 1 48179 51637
YP_009275907.1 NC_030933_p150 hypothetical protein phrog_2948 unknown function unknown function -1 115994 116542
YP_009275780.1 NC_030933_p23 hypothetical protein phrog_4538 unknown function unknown function 1 15356 16618
YP_009275870.1 NC_030933_p113 hypothetical protein phrog_13794 unknown function unknown function 1 98864 99130
YP_009275904.1 NC_030933_p147 YpoX protein I phrog_98 unknown function unknown function -1 115007 115396
YP_009275867.1 NC_030933_p110 hypothetical protein phrog_13266 unknown function unknown function 1 97650 97913
YP_009275841.1 NC_030933_p84 HTH homing endonuclease phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism 1 80173 80889
YP_009275766.1 NC_030933_p9 terminase large subunit phrog_5340 terminase large subunit head and packaging 1 4449 4646
YP_009275851.1 NC_030933_p94 major tail protein phrog_341 major tail protein tail 1 87936 88448
YP_009275787.1 NC_030933_p30 capsid protein phrog_1004 virion structural protein head and packaging 1 22902 23777
YP_009275898.1 NC_030933_p141 hypothetical protein phrog_3549 unknown function unknown function 1 112508 112768
YP_009275906.1 NC_030933_p149 hypothetical protein phrog_467 unknown function unknown function -1 115584 115991