Genomic map of Gordonia phage GMA4 (NC_030939)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030939
Definition
Gordonia phage GMA4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
45537
Host Name
Gordonia malaquae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
66.36
Number of singletons
21
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009276410.1 NC_030939_p55 hypothetical protein singleton unknown function unknown function 1 35668 35970
YP_009276362.1 NC_030939_p7 structural protein phrog_1650 major head protein head and packaging 1 6326 7234
YP_009276388.1 NC_030939_p33 hypothetical protein singleton unknown function unknown function 1 27730 27987
YP_009276407.1 NC_030939_p52 hypothetical protein singleton unknown function unknown function 1 34584 34763
YP_009276405.1 NC_030939_p50 hypothetical protein phrog_16479 unknown function unknown function 1 34041 34310
YP_009276416.1 NC_030939_p61 hypothetical protein singleton unknown function unknown function 1 40576 40734
YP_009276378.1 NC_030939_p23 hypothetical protein phrog_6116 holin lysis 1 21682 21882
YP_009276414.1 NC_030939_p59 hypothetical protein singleton unknown function unknown function 1 39801 40205
YP_009276402.1 NC_030939_p47 hypothetical protein singleton unknown function unknown function 1 33410 33589
YP_009276411.1 NC_030939_p56 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 35967 36167
YP_009276390.1 NC_030939_p35 hypothetical protein singleton unknown function unknown function 1 28849 29106
YP_009276412.1 NC_030939_p57 hypothetical protein singleton unknown function unknown function 1 36164 36322
YP_009276368.1 NC_030939_p13 major tail protein phrog_476 major tail protein tail 1 8955 9626
YP_009276409.1 NC_030939_p54 DNA methylase phrog_67 DNA methyltransferase other 1 34872 35675
YP_009276387.1 NC_030939_p32 hypothetical protein phrog_16278 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 27088 27585
YP_009276357.1 NC_030939_p2 large terminase subunit phrog_9 terminase large subunit head and packaging 1 489 2087
YP_009276419.1 NC_030939_p64 hypothetical protein phrog_1126 unknown function unknown function 1 42024 42347
YP_009276380.1 NC_030939_p25 hypothetical protein phrog_29438 unknown function unknown function -1 22399 22749
YP_009276374.1 NC_030939_p19 hypothetical protein phrog_13571 virion structural protein head and packaging 1 18117 19190
YP_009276418.1 NC_030939_p63 hypothetical protein singleton unknown function unknown function 1 41745 41891
YP_009276395.1 NC_030939_p40 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 30065 30856
YP_009276396.1 NC_030939_p41 hypothetical protein phrog_1911 unknown function unknown function 1 30857 31489
YP_009276397.1 NC_030939_p42 hypothetical protein phrog_1810 unknown function unknown function 1 31658 32065
YP_009276400.1 NC_030939_p45 hypothetical protein singleton unknown function unknown function 1 32539 32883
YP_009276393.1 NC_030939_p38 hypothetical protein phrog_1956 unknown function unknown function 1 29479 29760
YP_009276389.1 NC_030939_p34 hypothetical protein phrog_63 anti-repressor Ant transcription regulation 1 28046 28852
YP_009276403.1 NC_030939_p48 hypothetical protein phrog_38849 unknown function unknown function 1 33582 33890
YP_009276370.1 NC_030939_p15 tail assembly protein phrog_8963 tail assembly chaperone tail 1 9946 10263
YP_009276356.1 NC_030939_p1 hypothetical protein phrog_226 minor tail protein tail 1 79 492
YP_009276366.1 NC_030939_p11 hypothetical protein phrog_16886 unknown function unknown function 1 8224 8490
YP_009276406.1 NC_030939_p51 hypothetical protein singleton unknown function unknown function -1 34307 34519
YP_009276381.1 NC_030939_p26 hypothetical protein phrog_658 unknown function unknown function 1 22913 23575
YP_009276401.1 NC_030939_p46 hypothetical protein singleton unknown function unknown function 1 32880 33362
YP_009276413.1 NC_030939_p58 hypothetical protein phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 36626 39130
YP_009276379.1 NC_030939_p24 hypothetical protein phrog_404 minor tail protein tail 1 21879 22325
YP_009276422.1 NC_030939_p67 nuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43840 44490
YP_009276371.1 NC_030939_p16 tape measure protein phrog_4197 tail length tape measure protein tail 1 10768 16050
YP_009276415.1 NC_030939_p60 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 40216 40572
YP_009276421.1 NC_030939_p66 structural protein phrog_2647 head decoration head and packaging 1 42724 43833
YP_009276364.1 NC_030939_p9 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7458 7847
YP_009276375.1 NC_030939_p20 hypothetical protein phrog_13571 virion structural protein head and packaging 1 19192 20256
YP_009276391.1 NC_030939_p36 DNA binding protein singleton unknown function unknown function 1 29103 29303
YP_009276417.1 NC_030939_p62 hypothetical protein phrog_908 unknown function unknown function 1 40731 41486
YP_009276386.1 NC_030939_p31 hypothetical protein phrog_87 metallo-protease other -1 26645 27079
YP_009276359.1 NC_030939_p4 hypothetical protein phrog_34915 unknown function unknown function 1 3492 5039
YP_009276382.1 NC_030939_p27 hypothetical protein singleton unknown function unknown function 1 23590 23799
YP_009276394.1 NC_030939_p39 hypothetical protein phrog_19978 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29757 30101
YP_009276383.1 NC_030939_p28 hypothetical protein singleton unknown function unknown function -1 23993 24892
YP_009276358.1 NC_030939_p3 portal protein phrog_104 portal protein head and packaging 1 2101 3495
YP_009276420.1 NC_030939_p65 hypothetical protein singleton unknown function unknown function 1 42338 42712
YP_009276360.1 NC_030939_p5 hypothetical protein phrog_1793 head scaffolding protein head and packaging 1 5343 5924
YP_009276365.1 NC_030939_p10 hypothetical protein phrog_29587 unknown function unknown function 1 7847 8170
YP_009276423.1 NC_030939_p68 hypothetical protein singleton unknown function unknown function 1 44497 45141
YP_009276408.1 NC_030939_p53 hypothetical protein singleton unknown function unknown function 1 34736 34858
YP_009276361.1 NC_030939_p6 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 5937 6311
YP_009276377.1 NC_030939_p22 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 21398 21685
YP_009276384.1 NC_030939_p29 integrase phrog_1 integrase integration and excision -1 25217 26449
YP_009276404.1 NC_030939_p49 hypothetical protein singleton unknown function unknown function 1 33848 34048
YP_009276376.1 NC_030939_p21 lysin phrog_2998 endolysin lysis 1 20328 21401
YP_009276392.1 NC_030939_p37 hypothetical protein singleton unknown function unknown function 1 29315 29482
YP_009276373.1 NC_030939_p18 hypothetical protein phrog_110 minor tail protein tail 1 16957 18117
YP_009276399.1 NC_030939_p44 hypothetical protein singleton unknown function unknown function 1 32408 32542
YP_009276367.1 NC_030939_p12 hypothetical protein phrog_123 tail terminator connector 1 8487 8873
YP_009276363.1 NC_030939_p8 hypothetical protein phrog_33576 unknown function unknown function 1 7238 7465
YP_009276372.1 NC_030939_p17 hypothetical protein phrog_106 minor tail protein tail 1 16043 16957
YP_009276369.1 NC_030939_p14 tail assembly protein phrog_2624 tail assembly chaperone tail 1 9946 10748
YP_009276398.1 NC_030939_p43 hypothetical protein phrog_5017 unknown function unknown function 1 32065 32415
YP_009276385.1 NC_030939_p30 hypothetical protein phrog_5316 unknown function unknown function -1 26442 26648