Genomic map of Pseudomonas phage phi3 (NC_030940)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030940
Definition
Pseudomonas phage phi3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Phitrevirus; Pseudomonas virus phi3.
DB of origin
REFSEQ
Length
32637
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
36
%GC
63.85
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009276432.1 NC_030940_p9 Arc-like DNA binding domain containing protein phrog_795 partition protein ATPase other 1 9253 9498
YP_009276439.1 NC_030940_p16 terminase endonuclease subunit phrog_74 terminase small subunit head and packaging 1 15812 16546
YP_009276454.1 NC_030940_p31 tail fiber protein phrog_327 tail protein tail 1 25768 27732
YP_009276448.1 NC_030940_p25 hypothetical protein phrog_1214 unknown function unknown function 1 21233 21520
YP_009276430.1 NC_030940_p7 hypothetical protein phrog_6694 unknown function unknown function 1 8187 8534
YP_009276424.1 NC_030940_p1 reverse transcriptase phrog_1423 Reverse transcriptase DNA, RNA and nucleotide metabolism 1 1071 2756
YP_009276449.1 NC_030940_p26 hypothetical protein phrog_7050 unknown function unknown function 1 21544 21684
YP_009276425.1 NC_030940_p2 site-specific recombinase phrog_1 integrase integration and excision -1 2887 4056
YP_009276452.1 NC_030940_p29 hypothetical protein phrog_6 baseplate wedge subunit tail 1 24067 25239
YP_009276440.1 NC_030940_p17 head completion/stabilization protein phrog_71 head-tail adaptor Ad1 connector 1 16644 17105
YP_009276428.1 NC_030940_p5 hypothetical protein phrog_1139 DNA primase DNA, RNA and nucleotide metabolism 1 4638 7328
YP_009276453.1 NC_030940_p30 tail protein phrog_1228 tail protein tail 1 25232 25756
YP_009276457.1 NC_030940_p34 hypothetical protein phrog_4011 baseplate protein tail 1 30592 31563
YP_009276441.1 NC_030940_p18 tail protein phrog_65 tail terminator connector 1 17107 17544
YP_009276431.1 NC_030940_p8 hypothetical protein phrog_6694 unknown function unknown function 1 8564 8923
YP_009276436.1 NC_030940_p13 terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 11634 13682
YP_009276444.1 NC_030940_p21 tail tube protein phrog_1182 tail protein tail 1 19333 19782
YP_009276446.1 NC_030940_p23 lysozyme phrog_7 endolysin lysis 1 20242 20754
YP_009276438.1 NC_030940_p15 major capsid protein phrog_70 major head protein head and packaging 1 14793 15815
YP_009276458.1 NC_030940_p35 CopG family transcriptional regulator phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 31606 32010
YP_009276442.1 NC_030940_p19 virion morphogenesis family protein phrog_26 tail completion or Neck1 protein connector 1 17537 18202
YP_009276451.1 NC_030940_p28 hypothetical protein phrog_1237 unknown function unknown function 1 23750 24070
YP_009276456.1 NC_030940_p33 nucleoid DNA-binding protein phrog_1398 unknown function unknown function 1 29370 29909
YP_009276445.1 NC_030940_p22 DksA/TraR family C4-type zinc finger protein phrog_54 DksA-like zinc-finger protein other 1 19782 19991
YP_009276459.1 NC_030940_p36 periplasmic or secreted lipoprotein phrog_353 toxin moron, auxiliary metabolic gene and host takeover -1 32038 32220
YP_009276443.1 NC_030940_p20 tail sheath protein phrog_907 tail sheath tail 1 18214 19329
YP_009276429.1 NC_030940_p6 hypothetical protein singleton unknown function unknown function 1 7770 8171
YP_009276450.1 NC_030940_p27 tail tape measure protein phrog_28 tail length tape measure protein tail 1 21699 23753
YP_009276435.1 NC_030940_p12 portal protein phrog_68 portal protein head and packaging -1 10868 11575
YP_009276433.1 NC_030940_p10 hypothetical protein singleton unknown function unknown function 1 9722 10000
YP_009276447.1 NC_030940_p24 lysis protein phrog_13 Rz-like spanin lysis 1 20751 21236
YP_009276437.1 NC_030940_p14 serine peptidase phrog_73 head scaffolding protein head and packaging 1 13840 14793
YP_009276427.1 NC_030940_p4 hypothetical protein phrog_575 Cox-like excisionase and repressor integration and excision 1 4398 4628
YP_009276455.1 NC_030940_p32 tail fiber assembly-like protein phrog_1807 tail fiber protein tail 1 27746 28456
YP_009276426.1 NC_030940_p3 repressor protein c phrog_147 transcriptional regulator transcription regulation -1 4061 4300
YP_009276434.1 NC_030940_p11 hypothetical protein singleton unknown function unknown function 1 10378 10587