| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030940 |
Definition |
Pseudomonas phage phi3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Phitrevirus; Pseudomonas virus phi3. |
DB of origin |
REFSEQ |
Length |
32637 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
36 |
%GC |
63.85 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009276432.1 | NC_030940_p9 | Arc-like DNA binding domain containing protein | phrog_795 | partition protein ATPase | other | 1 | 9253 | 9498 |
| YP_009276439.1 | NC_030940_p16 | terminase endonuclease subunit | phrog_74 | terminase small subunit | head and packaging | 1 | 15812 | 16546 |
| YP_009276454.1 | NC_030940_p31 | tail fiber protein | phrog_327 | tail protein | tail | 1 | 25768 | 27732 |
| YP_009276448.1 | NC_030940_p25 | hypothetical protein | phrog_1214 | unknown function | unknown function | 1 | 21233 | 21520 |
| YP_009276430.1 | NC_030940_p7 | hypothetical protein | phrog_6694 | unknown function | unknown function | 1 | 8187 | 8534 |
| YP_009276424.1 | NC_030940_p1 | reverse transcriptase | phrog_1423 | Reverse transcriptase | DNA, RNA and nucleotide metabolism | 1 | 1071 | 2756 |
| YP_009276449.1 | NC_030940_p26 | hypothetical protein | phrog_7050 | unknown function | unknown function | 1 | 21544 | 21684 |
| YP_009276425.1 | NC_030940_p2 | site-specific recombinase | phrog_1 | integrase | integration and excision | -1 | 2887 | 4056 |
| YP_009276452.1 | NC_030940_p29 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 24067 | 25239 |
| YP_009276440.1 | NC_030940_p17 | head completion/stabilization protein | phrog_71 | head-tail adaptor Ad1 | connector | 1 | 16644 | 17105 |
| YP_009276428.1 | NC_030940_p5 | hypothetical protein | phrog_1139 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 4638 | 7328 |
| YP_009276453.1 | NC_030940_p30 | tail protein | phrog_1228 | tail protein | tail | 1 | 25232 | 25756 |
| YP_009276457.1 | NC_030940_p34 | hypothetical protein | phrog_4011 | baseplate protein | tail | 1 | 30592 | 31563 |
| YP_009276441.1 | NC_030940_p18 | tail protein | phrog_65 | tail terminator | connector | 1 | 17107 | 17544 |
| YP_009276431.1 | NC_030940_p8 | hypothetical protein | phrog_6694 | unknown function | unknown function | 1 | 8564 | 8923 |
| YP_009276436.1 | NC_030940_p13 | terminase ATPase subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 11634 | 13682 |
| YP_009276444.1 | NC_030940_p21 | tail tube protein | phrog_1182 | tail protein | tail | 1 | 19333 | 19782 |
| YP_009276446.1 | NC_030940_p23 | lysozyme | phrog_7 | endolysin | lysis | 1 | 20242 | 20754 |
| YP_009276438.1 | NC_030940_p15 | major capsid protein | phrog_70 | major head protein | head and packaging | 1 | 14793 | 15815 |
| YP_009276458.1 | NC_030940_p35 | CopG family transcriptional regulator | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 31606 | 32010 |
| YP_009276442.1 | NC_030940_p19 | virion morphogenesis family protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17537 | 18202 |
| YP_009276451.1 | NC_030940_p28 | hypothetical protein | phrog_1237 | unknown function | unknown function | 1 | 23750 | 24070 |
| YP_009276456.1 | NC_030940_p33 | nucleoid DNA-binding protein | phrog_1398 | unknown function | unknown function | 1 | 29370 | 29909 |
| YP_009276445.1 | NC_030940_p22 | DksA/TraR family C4-type zinc finger protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 19782 | 19991 |
| YP_009276459.1 | NC_030940_p36 | periplasmic or secreted lipoprotein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 32038 | 32220 |
| YP_009276443.1 | NC_030940_p20 | tail sheath protein | phrog_907 | tail sheath | tail | 1 | 18214 | 19329 |
| YP_009276429.1 | NC_030940_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7770 | 8171 |
| YP_009276450.1 | NC_030940_p27 | tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 21699 | 23753 |
| YP_009276435.1 | NC_030940_p12 | portal protein | phrog_68 | portal protein | head and packaging | -1 | 10868 | 11575 |
| YP_009276433.1 | NC_030940_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9722 | 10000 |
| YP_009276447.1 | NC_030940_p24 | lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 20751 | 21236 |
| YP_009276437.1 | NC_030940_p14 | serine peptidase | phrog_73 | head scaffolding protein | head and packaging | 1 | 13840 | 14793 |
| YP_009276427.1 | NC_030940_p4 | hypothetical protein | phrog_575 | Cox-like excisionase and repressor | integration and excision | 1 | 4398 | 4628 |
| YP_009276455.1 | NC_030940_p32 | tail fiber assembly-like protein | phrog_1807 | tail fiber protein | tail | 1 | 27746 | 28456 |
| YP_009276426.1 | NC_030940_p3 | repressor protein c | phrog_147 | transcriptional regulator | transcription regulation | -1 | 4061 | 4300 |
| YP_009276434.1 | NC_030940_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10378 | 10587 |