| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030941 |
Definition |
Gordonia phage Cozz, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus Cozz. |
DB of origin |
REFSEQ |
Length |
46600 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
60.04 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009276489.1 | NC_030941_p30 | hypothetical protein | phrog_18656 | unknown function | unknown function | -1 | 24206 | 24751 |
| YP_009276523.1 | NC_030941_p64 | hypothetical protein | phrog_35008 | unknown function | unknown function | 1 | 44083 | 44472 |
| YP_009276524.1 | NC_030941_p65 | hypothetical protein | phrog_16564 | unknown function | unknown function | 1 | 44456 | 44917 |
| YP_009276510.1 | NC_030941_p51 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36952 | 38430 |
| YP_009276474.1 | NC_030941_p15 | tail assembly chaperone | phrog_8595 | tail assembly chaperone | tail | 1 | 8886 | 9191 |
| YP_009276507.1 | NC_030941_p48 | nucleotide pyrophosphohydrolase | phrog_12184 | nucleotide pyrophosphohydrolase | other | -1 | 35622 | 36092 |
| YP_009276465.1 | NC_030941_p6 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 4221 | 4844 |
| YP_009276522.1 | NC_030941_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43772 | 44083 |
| YP_009276472.1 | NC_030941_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 7940 | 8782 |
| YP_009276503.1 | NC_030941_p44 | hypothetical protein | phrog_27770 | unknown function | unknown function | -1 | 33492 | 33638 |
| YP_009276483.1 | NC_030941_p24 | hypothetical protein | phrog_20118 | unknown function | unknown function | 1 | 20210 | 20518 |
| YP_009276500.1 | NC_030941_p41 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29749 | 32142 |
| YP_009276515.1 | NC_030941_p56 | DNA recombinase | phrog_3123 | unknown function | unknown function | 1 | 39563 | 41557 |
| YP_009276467.1 | NC_030941_p8 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5381 | 6352 |
| YP_009276502.1 | NC_030941_p43 | lysin B | phrog_102 | endolysin | lysis | -1 | 32656 | 33495 |
| YP_009276495.1 | NC_030941_p36 | hypothetical protein | phrog_10015 | unknown function | unknown function | -1 | 26591 | 26749 |
| YP_009276471.1 | NC_030941_p12 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 7523 | 7933 |
| YP_009276514.1 | NC_030941_p55 | hypothetical protein | phrog_13148 | unknown function | unknown function | -1 | 39092 | 39535 |
| YP_009276470.1 | NC_030941_p11 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 7258 | 7539 |
| YP_009276490.1 | NC_030941_p31 | hypothetical protein | phrog_16498 | unknown function | unknown function | -1 | 24897 | 25271 |
| YP_009276460.1 | NC_030941_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 52 | 543 |
| YP_009276464.1 | NC_030941_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2789 | 4246 |
| YP_009276501.1 | NC_030941_p42 | nucleoside deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 32139 | 32663 |
| YP_009276521.1 | NC_030941_p62 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 43369 | 43755 |
| YP_009276481.1 | NC_030941_p22 | membrane protein | phrog_3428 | holin | lysis | 1 | 19363 | 19659 |
| YP_009276505.1 | NC_030941_p46 | hypothetical protein | phrog_13667 | unknown function | unknown function | -1 | 34510 | 35388 |
| YP_009276480.1 | NC_030941_p21 | lysin A | phrog_3084 | endolysin | lysis | 1 | 18404 | 19366 |
| YP_009276494.1 | NC_030941_p35 | exonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26307 | 26594 |
| YP_009276462.1 | NC_030941_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 879 | 1073 |
| YP_009276469.1 | NC_030941_p10 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 6924 | 7265 |
| YP_009276482.1 | NC_030941_p23 | membrane protein | phrog_5552 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19720 | 20208 |
| YP_009276516.1 | NC_030941_p57 | HTH DNA binding domain protein | phrog_36245 | unknown function | unknown function | 1 | 41625 | 42005 |
| YP_009276485.1 | NC_030941_p26 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 21624 | 21965 |
| YP_009276508.1 | NC_030941_p49 | kinase | phrog_761 | thymidylate kinase | other | -1 | 36093 | 36632 |
| YP_009276463.1 | NC_030941_p4 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1113 | 2792 |
| YP_009276466.1 | NC_030941_p7 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 4895 | 5359 |
| YP_009276512.1 | NC_030941_p53 | hypothetical protein | phrog_17534 | unknown function | unknown function | -1 | 38696 | 38869 |
| YP_009276484.1 | NC_030941_p25 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 20518 | 21615 |
| YP_009276518.1 | NC_030941_p59 | hypothetical protein | phrog_19638 | unknown function | unknown function | 1 | 42658 | 42966 |
| YP_009276520.1 | NC_030941_p61 | hypothetical protein | phrog_37355 | unknown function | unknown function | 1 | 43178 | 43369 |
| YP_009276473.1 | NC_030941_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 8886 | 9640 |
| YP_009276497.1 | NC_030941_p38 | DNA recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 27378 | 28196 |
| YP_009276525.1 | NC_030941_p66 | hypothetical protein | phrog_24250 | unknown function | unknown function | 1 | 44925 | 45272 |
| YP_009276513.1 | NC_030941_p54 | hypothetical protein | phrog_25068 | unknown function | unknown function | -1 | 38862 | 39095 |
| YP_009276498.1 | NC_030941_p39 | helicase | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28348 | 29379 |
| YP_009276493.1 | NC_030941_p34 | hypothetical protein | phrog_34520 | unknown function | unknown function | 1 | 26035 | 26256 |
| YP_009276477.1 | NC_030941_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15733 | 17430 |
| YP_009276461.1 | NC_030941_p2 | hypothetical protein | phrog_34392 | unknown function | unknown function | 1 | 579 | 854 |
| YP_009276504.1 | NC_030941_p45 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33635 | 34513 |
| YP_009276506.1 | NC_030941_p47 | hypothetical protein | phrog_1581 | unknown function | unknown function | -1 | 35385 | 35618 |
| YP_009276511.1 | NC_030941_p52 | hypothetical protein | phrog_24818 | unknown function | unknown function | -1 | 38427 | 38696 |
| YP_009276478.1 | NC_030941_p19 | minor tail protein | phrog_8122 | minor tail protein | tail | 1 | 17443 | 17832 |
| YP_009276519.1 | NC_030941_p60 | hypothetical protein | phrog_26138 | unknown function | unknown function | 1 | 42963 | 43181 |
| YP_009276527.1 | NC_030941_p68 | hypothetical protein | phrog_19800 | unknown function | unknown function | 1 | 45488 | 45793 |
| YP_009276486.1 | NC_030941_p27 | hypothetical protein | phrog_21962 | tail protein | tail | 1 | 21967 | 22932 |
| YP_009276499.1 | NC_030941_p40 | hypothetical protein | phrog_38093 | unknown function | unknown function | -1 | 29372 | 29752 |
| YP_009276517.1 | NC_030941_p58 | hypothetical protein | phrog_22617 | unknown function | unknown function | 1 | 42212 | 42535 |
| YP_009276491.1 | NC_030941_p32 | HTH DNA binding domain protein | phrog_15118 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 25488 | 25886 |
| YP_009276526.1 | NC_030941_p67 | hypothetical protein | phrog_25464 | unknown function | unknown function | 1 | 45226 | 45498 |
| YP_009276488.1 | NC_030941_p29 | HTH DNA binding protein | singleton | unknown function | unknown function | -1 | 23525 | 24115 |
| YP_009276487.1 | NC_030941_p28 | hypothetical protein | phrog_9930 | unknown function | unknown function | 1 | 22936 | 23445 |
| YP_009276476.1 | NC_030941_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14765 | 15736 |
| YP_009276492.1 | NC_030941_p33 | hypothetical protein | phrog_26548 | unknown function | unknown function | 1 | 25883 | 25978 |
| YP_009276479.1 | NC_030941_p20 | lysin A | phrog_1512 | endolysin | lysis | 1 | 17829 | 18407 |
| YP_009276468.1 | NC_030941_p9 | head-to-tail connector protein | phrog_1290 | head-tail adaptor | connector | 1 | 6418 | 6927 |
| YP_009276496.1 | NC_030941_p37 | hypothetical protein | phrog_14876 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26827 | 27378 |
| YP_009276509.1 | NC_030941_p50 | hypothetical protein | phrog_23484 | unknown function | unknown function | -1 | 36629 | 36955 |
| YP_009276475.1 | NC_030941_p16 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 9630 | 14768 |