Genomic map of Gordonia phage Cozz (NC_030941)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030941
Definition
Gordonia phage Cozz, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus Cozz.
DB of origin
REFSEQ
Length
46600
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
60.04
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009276489.1 NC_030941_p30 hypothetical protein phrog_18656 unknown function unknown function -1 24206 24751
YP_009276523.1 NC_030941_p64 hypothetical protein phrog_35008 unknown function unknown function 1 44083 44472
YP_009276524.1 NC_030941_p65 hypothetical protein phrog_16564 unknown function unknown function 1 44456 44917
YP_009276510.1 NC_030941_p51 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 36952 38430
YP_009276474.1 NC_030941_p15 tail assembly chaperone phrog_8595 tail assembly chaperone tail 1 8886 9191
YP_009276507.1 NC_030941_p48 nucleotide pyrophosphohydrolase phrog_12184 nucleotide pyrophosphohydrolase other -1 35622 36092
YP_009276465.1 NC_030941_p6 capsid maturation protease phrog_193 head maturation protease head and packaging 1 4221 4844
YP_009276522.1 NC_030941_p63 hypothetical protein singleton unknown function unknown function 1 43772 44083
YP_009276472.1 NC_030941_p13 major tail subunit phrog_117 major tail protein tail 1 7940 8782
YP_009276503.1 NC_030941_p44 hypothetical protein phrog_27770 unknown function unknown function -1 33492 33638
YP_009276483.1 NC_030941_p24 hypothetical protein phrog_20118 unknown function unknown function 1 20210 20518
YP_009276500.1 NC_030941_p41 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29749 32142
YP_009276515.1 NC_030941_p56 DNA recombinase phrog_3123 unknown function unknown function 1 39563 41557
YP_009276467.1 NC_030941_p8 major capsid protein phrog_10 major head protein head and packaging 1 5381 6352
YP_009276502.1 NC_030941_p43 lysin B phrog_102 endolysin lysis -1 32656 33495
YP_009276495.1 NC_030941_p36 hypothetical protein phrog_10015 unknown function unknown function -1 26591 26749
YP_009276471.1 NC_030941_p12 head-to-tail connector protein phrog_123 tail terminator connector 1 7523 7933
YP_009276514.1 NC_030941_p55 hypothetical protein phrog_13148 unknown function unknown function -1 39092 39535
YP_009276470.1 NC_030941_p11 head-to-tail connector protein phrog_387 neck protein connector 1 7258 7539
YP_009276490.1 NC_030941_p31 hypothetical protein phrog_16498 unknown function unknown function -1 24897 25271
YP_009276460.1 NC_030941_p1 hypothetical protein phrog_226 minor tail protein tail 1 52 543
YP_009276464.1 NC_030941_p5 portal protein phrog_104 portal protein head and packaging 1 2789 4246
YP_009276501.1 NC_030941_p42 nucleoside deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 32139 32663
YP_009276521.1 NC_030941_p62 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 43369 43755
YP_009276481.1 NC_030941_p22 membrane protein phrog_3428 holin lysis 1 19363 19659
YP_009276505.1 NC_030941_p46 hypothetical protein phrog_13667 unknown function unknown function -1 34510 35388
YP_009276480.1 NC_030941_p21 lysin A phrog_3084 endolysin lysis 1 18404 19366
YP_009276494.1 NC_030941_p35 exonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 26307 26594
YP_009276462.1 NC_030941_p3 hypothetical protein singleton unknown function unknown function 1 879 1073
YP_009276469.1 NC_030941_p10 head-to-tail connector protein phrog_763 head-tail adaptor connector 1 6924 7265
YP_009276482.1 NC_030941_p23 membrane protein phrog_5552 membrane protein moron, auxiliary metabolic gene and host takeover 1 19720 20208
YP_009276516.1 NC_030941_p57 HTH DNA binding domain protein phrog_36245 unknown function unknown function 1 41625 42005
YP_009276485.1 NC_030941_p26 hypothetical protein phrog_1126 unknown function unknown function 1 21624 21965
YP_009276508.1 NC_030941_p49 kinase phrog_761 thymidylate kinase other -1 36093 36632
YP_009276463.1 NC_030941_p4 terminase phrog_9 terminase large subunit head and packaging 1 1113 2792
YP_009276466.1 NC_030941_p7 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 4895 5359
YP_009276512.1 NC_030941_p53 hypothetical protein phrog_17534 unknown function unknown function -1 38696 38869
YP_009276484.1 NC_030941_p25 hypothetical protein phrog_7719 minor tail protein tail 1 20518 21615
YP_009276518.1 NC_030941_p59 hypothetical protein phrog_19638 unknown function unknown function 1 42658 42966
YP_009276520.1 NC_030941_p61 hypothetical protein phrog_37355 unknown function unknown function 1 43178 43369
YP_009276473.1 NC_030941_p14 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 8886 9640
YP_009276497.1 NC_030941_p38 DNA recombinase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 27378 28196
YP_009276525.1 NC_030941_p66 hypothetical protein phrog_24250 unknown function unknown function 1 44925 45272
YP_009276513.1 NC_030941_p54 hypothetical protein phrog_25068 unknown function unknown function -1 38862 39095
YP_009276498.1 NC_030941_p39 helicase phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 28348 29379
YP_009276493.1 NC_030941_p34 hypothetical protein phrog_34520 unknown function unknown function 1 26035 26256
YP_009276477.1 NC_030941_p18 minor tail protein phrog_110 minor tail protein tail 1 15733 17430
YP_009276461.1 NC_030941_p2 hypothetical protein phrog_34392 unknown function unknown function 1 579 854
YP_009276504.1 NC_030941_p45 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 33635 34513
YP_009276506.1 NC_030941_p47 hypothetical protein phrog_1581 unknown function unknown function -1 35385 35618
YP_009276511.1 NC_030941_p52 hypothetical protein phrog_24818 unknown function unknown function -1 38427 38696
YP_009276478.1 NC_030941_p19 minor tail protein phrog_8122 minor tail protein tail 1 17443 17832
YP_009276519.1 NC_030941_p60 hypothetical protein phrog_26138 unknown function unknown function 1 42963 43181
YP_009276527.1 NC_030941_p68 hypothetical protein phrog_19800 unknown function unknown function 1 45488 45793
YP_009276486.1 NC_030941_p27 hypothetical protein phrog_21962 tail protein tail 1 21967 22932
YP_009276499.1 NC_030941_p40 hypothetical protein phrog_38093 unknown function unknown function -1 29372 29752
YP_009276517.1 NC_030941_p58 hypothetical protein phrog_22617 unknown function unknown function 1 42212 42535
YP_009276491.1 NC_030941_p32 HTH DNA binding domain protein phrog_15118 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 25488 25886
YP_009276526.1 NC_030941_p67 hypothetical protein phrog_25464 unknown function unknown function 1 45226 45498
YP_009276488.1 NC_030941_p29 HTH DNA binding protein singleton unknown function unknown function -1 23525 24115
YP_009276487.1 NC_030941_p28 hypothetical protein phrog_9930 unknown function unknown function 1 22936 23445
YP_009276476.1 NC_030941_p17 minor tail protein phrog_106 minor tail protein tail 1 14765 15736
YP_009276492.1 NC_030941_p33 hypothetical protein phrog_26548 unknown function unknown function 1 25883 25978
YP_009276479.1 NC_030941_p20 lysin A phrog_1512 endolysin lysis 1 17829 18407
YP_009276468.1 NC_030941_p9 head-to-tail connector protein phrog_1290 head-tail adaptor connector 1 6418 6927
YP_009276496.1 NC_030941_p37 hypothetical protein phrog_14876 DNA polymerase DNA, RNA and nucleotide metabolism -1 26827 27378
YP_009276509.1 NC_030941_p50 hypothetical protein phrog_23484 unknown function unknown function -1 36629 36955
YP_009276475.1 NC_030941_p16 tape measure protein phrog_4197 tail length tape measure protein tail 1 9630 14768