| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030943 |
Definition |
Gordonia phage Blueberry, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
54990 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
67.03 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009276686.1 | NC_030943_p61 | hypothetical protein | phrog_26600 | unknown function | unknown function | 1 | 42019 | 42672 |
| YP_009276666.1 | NC_030943_p41 | immunity repressor | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 32854 | 33240 |
| YP_009276700.1 | NC_030943_p75 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 47848 | 48144 |
| YP_009276709.1 | NC_030943_p84 | transposase | phrog_157 | transposase | integration and excision | -1 | 52807 | 53769 |
| YP_009276642.1 | NC_030943_p17 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9765 | 10549 |
| YP_009276683.1 | NC_030943_p58 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39736 | 40665 |
| YP_009276647.1 | NC_030943_p22 | lysin A | phrog_1512 | endolysin | lysis | 1 | 18628 | 19335 |
| YP_009276671.1 | NC_030943_p46 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35195 | 35956 |
| YP_009276692.1 | NC_030943_p67 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 44110 | 44895 |
| YP_009276664.1 | NC_030943_p39 | peptidase | phrog_87 | metallo-protease | other | -1 | 31970 | 32407 |
| YP_009276675.1 | NC_030943_p50 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 36808 | 37176 |
| YP_009276689.1 | NC_030943_p64 | hypothetical protein | phrog_33336 | unknown function | unknown function | 1 | 43417 | 43827 |
| YP_009276648.1 | NC_030943_p23 | lysin A | phrog_3084 | endolysin | lysis | 1 | 19335 | 20246 |
| YP_009276640.1 | NC_030943_p15 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8498 | 8917 |
| YP_009276703.1 | NC_030943_p78 | hypothetical protein | phrog_11256 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 48841 | 50049 |
| YP_009276668.1 | NC_030943_p43 | hypothetical protein | phrog_6288 | unknown function | unknown function | -1 | 33832 | 34560 |
| YP_009276651.1 | NC_030943_p26 | membrane protein | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21012 | 21470 |
| YP_009276705.1 | NC_030943_p80 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 50627 | 50842 |
| YP_009276634.1 | NC_030943_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6835 | 7194 |
| YP_009276636.1 | NC_030943_p11 | hypothetical protein | phrog_16006 | unknown function | unknown function | 1 | 7396 | 7596 |
| YP_009276685.1 | NC_030943_p60 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 41720 | 42022 |
| YP_009276638.1 | NC_030943_p13 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7934 | 8221 |
| YP_009276637.1 | NC_030943_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7602 | 7937 |
| YP_009276665.1 | NC_030943_p40 | DNA helicase domain protein | singleton | unknown function | unknown function | -1 | 32438 | 32857 |
| YP_009276697.1 | NC_030943_p72 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46202 | 46618 |
| YP_009276654.1 | NC_030943_p29 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22628 | 23695 |
| YP_009276690.1 | NC_030943_p65 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 43833 | 44018 |
| YP_009276631.1 | NC_030943_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5041 | 5970 |
| YP_009276698.1 | NC_030943_p73 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 46615 | 46773 |
| YP_009276699.1 | NC_030943_p74 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46763 | 47851 |
| YP_009276678.1 | NC_030943_p53 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 37912 | 38094 |
| YP_009276652.1 | NC_030943_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 21464 | 22264 |
| YP_009276672.1 | NC_030943_p47 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 36031 | 36195 |
| YP_009276681.1 | NC_030943_p56 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 38796 | 39152 |
| YP_009276688.1 | NC_030943_p63 | hypothetical protein | phrog_27040 | unknown function | unknown function | 1 | 42848 | 43417 |
| YP_009276711.1 | NC_030943_p86 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 54538 | 54906 |
| YP_009276695.1 | NC_030943_p70 | hypothetical protein | phrog_13233 | unknown function | unknown function | 1 | 45529 | 45840 |
| YP_009276684.1 | NC_030943_p59 | ssDNA binding protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40662 | 41723 |
| YP_009276696.1 | NC_030943_p71 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 45837 | 46205 |
| YP_009276660.1 | NC_030943_p35 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 28799 | 28987 |
| YP_009276663.1 | NC_030943_p38 | HTH DNA binding domain protein | phrog_5316 | unknown function | unknown function | -1 | 31768 | 31977 |
| YP_009276632.1 | NC_030943_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 5967 | 6446 |
| YP_009276691.1 | NC_030943_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44015 | 44113 |
| YP_009276682.1 | NC_030943_p57 | DnaQ-like exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39149 | 39736 |
| YP_009276669.1 | NC_030943_p44 | CRO protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34807 | 35028 |
| YP_009276676.1 | NC_030943_p51 | hypothetical protein | phrog_19919 | unknown function | unknown function | 1 | 37173 | 37583 |
| YP_009276641.1 | NC_030943_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 9023 | 9661 |
| YP_009276673.1 | NC_030943_p48 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 36192 | 36512 |
| YP_009276633.1 | NC_030943_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6443 | 6835 |
| YP_009276693.1 | NC_030943_p68 | hypothetical protein | phrog_11360 | unknown function | unknown function | 1 | 44892 | 45110 |
| YP_009276658.1 | NC_030943_p33 | hypothetical protein | phrog_35313 | unknown function | unknown function | 1 | 26343 | 27590 |
| YP_009276639.1 | NC_030943_p14 | head-to-tail connector | phrog_5837 | head closure Hc1 | connector | 1 | 8214 | 8501 |
| YP_009276627.1 | NC_030943_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 361 | 1959 |
| YP_009276650.1 | NC_030943_p25 | membrane protein | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20771 | 21025 |
| YP_009276646.1 | NC_030943_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16962 | 18611 |
| YP_009276661.1 | NC_030943_p36 | hypothetical protein | phrog_12638 | unknown function | unknown function | -1 | 29378 | 30241 |
| YP_009276626.1 | NC_030943_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 57 | 392 |
| YP_009276659.1 | NC_030943_p34 | HNH endonuclease domain protein | phrog_38451 | unknown function | unknown function | -1 | 27587 | 28546 |
| YP_009276701.1 | NC_030943_p76 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 48141 | 48380 |
| YP_009276630.1 | NC_030943_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4627 | 5037 |
| YP_009276655.1 | NC_030943_p30 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23695 | 25212 |
| YP_009276645.1 | NC_030943_p20 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16105 | 16965 |
| YP_009276694.1 | NC_030943_p69 | hypothetical protein | phrog_12575 | unknown function | unknown function | 1 | 45107 | 45532 |
| YP_009276662.1 | NC_030943_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 30375 | 31766 |
| YP_009276687.1 | NC_030943_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42669 | 42851 |
| YP_009276635.1 | NC_030943_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7203 | 7403 |
| YP_009276629.1 | NC_030943_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3338 | 4624 |
| YP_009276706.1 | NC_030943_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50844 | 51089 |
| YP_009276710.1 | NC_030943_p85 | transposase | phrog_151 | transposase | integration and excision | -1 | 53772 | 54089 |
| YP_009276649.1 | NC_030943_p24 | membrane protein | phrog_443 | holin | lysis | 1 | 20249 | 20710 |
| YP_009276656.1 | NC_030943_p31 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 25209 | 25544 |
| YP_009276674.1 | NC_030943_p49 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 36509 | 36811 |
| YP_009276643.1 | NC_030943_p18 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9765 | 10175 |
| YP_009276628.1 | NC_030943_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1974 | 3338 |
| YP_009276677.1 | NC_030943_p52 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 37580 | 37915 |
| YP_009276653.1 | NC_030943_p28 | hypothetical protein | phrog_9406 | unknown function | unknown function | 1 | 22261 | 22635 |
| YP_009276680.1 | NC_030943_p55 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 38455 | 38799 |
| YP_009276707.1 | NC_030943_p82 | DNA binding domain protein | phrog_908 | unknown function | unknown function | 1 | 51089 | 51874 |
| YP_009276704.1 | NC_030943_p79 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 50046 | 50630 |
| YP_009276702.1 | NC_030943_p77 | hypothetical protein | phrog_20666 | unknown function | unknown function | 1 | 48377 | 48844 |
| YP_009276679.1 | NC_030943_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38102 | 38458 |
| YP_009276657.1 | NC_030943_p32 | minor tail protein | phrog_25765 | minor tail protein | tail | 1 | 25537 | 26340 |
| YP_009276644.1 | NC_030943_p19 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10619 | 16108 |
| YP_009276708.1 | NC_030943_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51871 | 52428 |
| YP_009276667.1 | NC_030943_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33305 | 33835 |
| YP_009276670.1 | NC_030943_p45 | hypothetical protein | phrog_15107 | unknown function | unknown function | 1 | 35025 | 35198 |