Genomic map of Clostridium phage phiCT19406B (NC_030947)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030947
Definition
Clostridium phage phiCT19406B, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
REFSEQ
Length
38243
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
29.04
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009276942.1 NC_030947_p45 XkdN-like protein phrog_389 tail protein XkdN-like tail 1 23048 23458
YP_009276920.1 NC_030947_p23 hypothetical protein phrog_15483 unknown function unknown function 1 11002 11226
YP_009276911.1 NC_030947_p14 replication protein DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7076 7972
YP_009276915.1 NC_030947_p18 replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 8797 9180
YP_009276962.1 NC_030947_p65 CopG family transcriptional regulator phrog_3180 Arc-like repressor transcription regulation 1 37513 37665
YP_009276945.1 NC_030947_p48 XkdP-like protein phrog_5184 unknown function unknown function 1 26704 27123
YP_009276902.1 NC_030947_p5 anti-repressor phrog_373 anti-repressor transcription regulation 1 2706 3455
YP_009276936.1 NC_030947_p39 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 20218 20634
YP_009276954.1 NC_030947_p57 hypothetical protein phrog_20843 unknown function unknown function 1 32900 33958
YP_009276944.1 NC_030947_p47 tail-tape measure protein phrog_991 tail length tape measure protein tail 1 24076 26658
YP_009276941.1 NC_030947_p44 hypothetical protein phrog_15580 unknown function unknown function 1 22894 23046
YP_009276951.1 NC_030947_p54 hypothetical protein phrog_20528 unknown function unknown function 1 31210 31857
YP_009276956.1 NC_030947_p59 XhlA hemolysin phrog_1193 hemolysin other 1 34420 34653
YP_009276955.1 NC_030947_p58 hypothetical protein phrog_19726 unknown function unknown function 1 34072 34347
YP_009276950.1 NC_030947_p53 tail fiber protein phrog_18608 unknown function unknown function 1 29949 31199
YP_009276959.1 NC_030947_p62 hypothetical protein phrog_1281 unknown function unknown function 1 35928 36599
YP_009276901.1 NC_030947_p4 hypothetical protein phrog_17201 unknown function unknown function 1 2366 2539
YP_009276931.1 NC_030947_p34 clp protease family protein phrog_94 head maturation protease head and packaging 1 17575 18255
YP_009276917.1 NC_030947_p20 hypothetical protein phrog_3497 unknown function unknown function 1 10004 10366
YP_009276948.1 NC_030947_p51 xkdS-like protein phrog_120 baseplate wedge subunit tail 1 28458 28898
YP_009276939.1 NC_030947_p42 xkdK-like tail sheath protein phrog_1480 tail sheath tail 1 21357 22418
YP_009276934.1 NC_030947_p37 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 19582 19860
YP_009276908.1 NC_030947_p11 endonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 5158 6078
YP_009276949.1 NC_030947_p52 baseplate J protein phrog_6 baseplate wedge subunit tail 1 28891 29952
YP_009276953.1 NC_030947_p56 hypothetical protein phrog_20086 unknown function unknown function 1 32520 32897
YP_009276923.1 NC_030947_p26 hypothetical protein phrog_16875 unknown function unknown function 1 12294 12536
YP_009276906.1 NC_030947_p9 hypothetical protein phrog_11013 unknown function unknown function 1 4386 4649
YP_009276913.1 NC_030947_p16 hypothetical protein phrog_2245 nucleoside triphosphate pyrophosphohydrolase other 1 8253 8660
YP_009276940.1 NC_030947_p43 XkdM-like protein phrog_365 tail protein tail 1 22438 22869
YP_009276927.1 NC_030947_p30 HNH endonuclease family protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13681 14109
YP_009276922.1 NC_030947_p25 hypothetical protein phrog_10757 unknown function unknown function 1 11778 11930
YP_009276925.1 NC_030947_p28 pilus assembly protein HicB phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 12912 13319
YP_009276957.1 NC_030947_p60 holin phrog_1129 holin lysis 1 34665 34934
YP_009276898.1 NC_030947_p1 serine recombinase phrog_95 integrase integration and excision -1 38193 38243
YP_009276898.1 NC_030947_p1 serine recombinase phrog_95 integrase integration and excision -1 1 1479
YP_009276930.1 NC_030947_p33 portal protein phrog_12 portal protein head and packaging 1 16346 17578
YP_009276910.1 NC_030947_p13 hypothetical protein phrog_10625 unknown function unknown function 1 6879 7058
YP_009276958.1 NC_030947_p61 N-acetylmuramoyl-L-alanine amidase phrog_10967 endolysin lysis 1 34935 35735
YP_009276914.1 NC_030947_p17 hypothetical protein phrog_13235 unknown function unknown function 1 8666 8797
YP_009276928.1 NC_030947_p31 terminase small subunit phrog_83 terminase small subunit head and packaging 1 14185 14646
YP_009276946.1 NC_030947_p49 cell wall hydrolase phrog_400 tail protein tail 1 27120 28214
YP_009276921.1 NC_030947_p24 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 11251 11766
YP_009276907.1 NC_030947_p10 hypothetical protein phrog_21907 unknown function unknown function 1 4734 5165
YP_009276960.1 NC_030947_p63 xkdS-like protein phrog_13386 unknown function unknown function 1 36600 37067
YP_009276937.1 NC_030947_p40 hypothetical protein phrog_18448 unknown function unknown function 1 20643 20873
YP_009276933.1 NC_030947_p36 hypothetical protein phrog_2616 unknown function unknown function 1 19436 19573
YP_009276938.1 NC_030947_p41 hypothetical protein phrog_525 unknown function unknown function 1 20924 21352
YP_009276905.1 NC_030947_p8 hypothetical protein phrog_20935 unknown function unknown function 1 4237 4392
YP_009276961.1 NC_030947_p64 Cro/CI family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 37116 37352
YP_009276963.1 NC_030947_p66 hypothetical protein phrog_15134 unknown function unknown function 1 37865 38152
YP_009276916.1 NC_030947_p19 hypothetical protein phrog_1029 unknown function unknown function 1 9204 9920
YP_009276900.1 NC_030947_p3 Cro/Cl family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 2140 2355
YP_009276935.1 NC_030947_p38 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 19869 20228
YP_009276947.1 NC_030947_p50 hypothetical protein phrog_579 unknown function unknown function 1 28240 28455
YP_009276904.1 NC_030947_p7 hypothetical protein phrog_21773 unknown function unknown function 1 3758 4129
YP_009276932.1 NC_030947_p35 major capsid protein phrog_10 major head protein head and packaging 1 18287 19393
YP_009276918.1 NC_030947_p21 YopX-like protein phrog_98 unknown function unknown function 1 10473 10862
YP_009276929.1 NC_030947_p32 terminase large subunit phrog_9 terminase large subunit head and packaging 1 14643 16334
YP_009276919.1 NC_030947_p22 hypothetical protein phrog_9430 unknown function unknown function 1 10865 11005
YP_009276912.1 NC_030947_p15 hypothetical protein phrog_16451 unknown function unknown function 1 7986 8240
YP_009276926.1 NC_030947_p29 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover -1 13377 13559
YP_009276909.1 NC_030947_p12 RecT family recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6080 6886
YP_009276924.1 NC_030947_p27 hypothetical protein phrog_3928 unknown function unknown function 1 12490 12666
YP_009276903.1 NC_030947_p6 hypothetical protein phrog_6593 unknown function unknown function 1 3541 3753
YP_009276952.1 NC_030947_p55 hypothetical protein phrog_521 tail protein tail 1 31861 32520
YP_009276899.1 NC_030947_p2 XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 1502 1912
YP_009276943.1 NC_030947_p46 hypothetical protein phrog_18851 unknown function unknown function 1 23645 24022