| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030947 |
Definition |
Clostridium phage phiCT19406B, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae. |
DB of origin |
REFSEQ |
Length |
38243 |
Host Name |
Clostridium tetani |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
29.04 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009276942.1 | NC_030947_p45 | XkdN-like protein | phrog_389 | tail protein XkdN-like | tail | 1 | 23048 | 23458 |
| YP_009276920.1 | NC_030947_p23 | hypothetical protein | phrog_15483 | unknown function | unknown function | 1 | 11002 | 11226 |
| YP_009276911.1 | NC_030947_p14 | replication protein DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7076 | 7972 |
| YP_009276915.1 | NC_030947_p18 | replication terminator protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 8797 | 9180 |
| YP_009276962.1 | NC_030947_p65 | CopG family transcriptional regulator | phrog_3180 | Arc-like repressor | transcription regulation | 1 | 37513 | 37665 |
| YP_009276945.1 | NC_030947_p48 | XkdP-like protein | phrog_5184 | unknown function | unknown function | 1 | 26704 | 27123 |
| YP_009276902.1 | NC_030947_p5 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 2706 | 3455 |
| YP_009276936.1 | NC_030947_p39 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20218 | 20634 |
| YP_009276954.1 | NC_030947_p57 | hypothetical protein | phrog_20843 | unknown function | unknown function | 1 | 32900 | 33958 |
| YP_009276944.1 | NC_030947_p47 | tail-tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 24076 | 26658 |
| YP_009276941.1 | NC_030947_p44 | hypothetical protein | phrog_15580 | unknown function | unknown function | 1 | 22894 | 23046 |
| YP_009276951.1 | NC_030947_p54 | hypothetical protein | phrog_20528 | unknown function | unknown function | 1 | 31210 | 31857 |
| YP_009276956.1 | NC_030947_p59 | XhlA hemolysin | phrog_1193 | hemolysin | other | 1 | 34420 | 34653 |
| YP_009276955.1 | NC_030947_p58 | hypothetical protein | phrog_19726 | unknown function | unknown function | 1 | 34072 | 34347 |
| YP_009276950.1 | NC_030947_p53 | tail fiber protein | phrog_18608 | unknown function | unknown function | 1 | 29949 | 31199 |
| YP_009276959.1 | NC_030947_p62 | hypothetical protein | phrog_1281 | unknown function | unknown function | 1 | 35928 | 36599 |
| YP_009276901.1 | NC_030947_p4 | hypothetical protein | phrog_17201 | unknown function | unknown function | 1 | 2366 | 2539 |
| YP_009276931.1 | NC_030947_p34 | clp protease family protein | phrog_94 | head maturation protease | head and packaging | 1 | 17575 | 18255 |
| YP_009276917.1 | NC_030947_p20 | hypothetical protein | phrog_3497 | unknown function | unknown function | 1 | 10004 | 10366 |
| YP_009276948.1 | NC_030947_p51 | xkdS-like protein | phrog_120 | baseplate wedge subunit | tail | 1 | 28458 | 28898 |
| YP_009276939.1 | NC_030947_p42 | xkdK-like tail sheath protein | phrog_1480 | tail sheath | tail | 1 | 21357 | 22418 |
| YP_009276934.1 | NC_030947_p37 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 19582 | 19860 |
| YP_009276908.1 | NC_030947_p11 | endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 5158 | 6078 |
| YP_009276949.1 | NC_030947_p52 | baseplate J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 28891 | 29952 |
| YP_009276953.1 | NC_030947_p56 | hypothetical protein | phrog_20086 | unknown function | unknown function | 1 | 32520 | 32897 |
| YP_009276923.1 | NC_030947_p26 | hypothetical protein | phrog_16875 | unknown function | unknown function | 1 | 12294 | 12536 |
| YP_009276906.1 | NC_030947_p9 | hypothetical protein | phrog_11013 | unknown function | unknown function | 1 | 4386 | 4649 |
| YP_009276913.1 | NC_030947_p16 | hypothetical protein | phrog_2245 | nucleoside triphosphate pyrophosphohydrolase | other | 1 | 8253 | 8660 |
| YP_009276940.1 | NC_030947_p43 | XkdM-like protein | phrog_365 | tail protein | tail | 1 | 22438 | 22869 |
| YP_009276927.1 | NC_030947_p30 | HNH endonuclease family protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13681 | 14109 |
| YP_009276922.1 | NC_030947_p25 | hypothetical protein | phrog_10757 | unknown function | unknown function | 1 | 11778 | 11930 |
| YP_009276925.1 | NC_030947_p28 | pilus assembly protein HicB | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 12912 | 13319 |
| YP_009276957.1 | NC_030947_p60 | holin | phrog_1129 | holin | lysis | 1 | 34665 | 34934 |
| YP_009276898.1 | NC_030947_p1 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 38193 | 38243 |
| YP_009276898.1 | NC_030947_p1 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 1 | 1479 |
| YP_009276930.1 | NC_030947_p33 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 16346 | 17578 |
| YP_009276910.1 | NC_030947_p13 | hypothetical protein | phrog_10625 | unknown function | unknown function | 1 | 6879 | 7058 |
| YP_009276958.1 | NC_030947_p61 | N-acetylmuramoyl-L-alanine amidase | phrog_10967 | endolysin | lysis | 1 | 34935 | 35735 |
| YP_009276914.1 | NC_030947_p17 | hypothetical protein | phrog_13235 | unknown function | unknown function | 1 | 8666 | 8797 |
| YP_009276928.1 | NC_030947_p31 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 14185 | 14646 |
| YP_009276946.1 | NC_030947_p49 | cell wall hydrolase | phrog_400 | tail protein | tail | 1 | 27120 | 28214 |
| YP_009276921.1 | NC_030947_p24 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 11251 | 11766 |
| YP_009276907.1 | NC_030947_p10 | hypothetical protein | phrog_21907 | unknown function | unknown function | 1 | 4734 | 5165 |
| YP_009276960.1 | NC_030947_p63 | xkdS-like protein | phrog_13386 | unknown function | unknown function | 1 | 36600 | 37067 |
| YP_009276937.1 | NC_030947_p40 | hypothetical protein | phrog_18448 | unknown function | unknown function | 1 | 20643 | 20873 |
| YP_009276933.1 | NC_030947_p36 | hypothetical protein | phrog_2616 | unknown function | unknown function | 1 | 19436 | 19573 |
| YP_009276938.1 | NC_030947_p41 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 20924 | 21352 |
| YP_009276905.1 | NC_030947_p8 | hypothetical protein | phrog_20935 | unknown function | unknown function | 1 | 4237 | 4392 |
| YP_009276961.1 | NC_030947_p64 | Cro/CI family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 37116 | 37352 |
| YP_009276963.1 | NC_030947_p66 | hypothetical protein | phrog_15134 | unknown function | unknown function | 1 | 37865 | 38152 |
| YP_009276916.1 | NC_030947_p19 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 9204 | 9920 |
| YP_009276900.1 | NC_030947_p3 | Cro/Cl family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2140 | 2355 |
| YP_009276935.1 | NC_030947_p38 | head-tail adaptor protein | phrog_25 | head closure Hc1 | connector | 1 | 19869 | 20228 |
| YP_009276947.1 | NC_030947_p50 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 28240 | 28455 |
| YP_009276904.1 | NC_030947_p7 | hypothetical protein | phrog_21773 | unknown function | unknown function | 1 | 3758 | 4129 |
| YP_009276932.1 | NC_030947_p35 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 18287 | 19393 |
| YP_009276918.1 | NC_030947_p21 | YopX-like protein | phrog_98 | unknown function | unknown function | 1 | 10473 | 10862 |
| YP_009276929.1 | NC_030947_p32 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 14643 | 16334 |
| YP_009276919.1 | NC_030947_p22 | hypothetical protein | phrog_9430 | unknown function | unknown function | 1 | 10865 | 11005 |
| YP_009276912.1 | NC_030947_p15 | hypothetical protein | phrog_16451 | unknown function | unknown function | 1 | 7986 | 8240 |
| YP_009276926.1 | NC_030947_p29 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 13377 | 13559 |
| YP_009276909.1 | NC_030947_p12 | RecT family recombinase | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6080 | 6886 |
| YP_009276924.1 | NC_030947_p27 | hypothetical protein | phrog_3928 | unknown function | unknown function | 1 | 12490 | 12666 |
| YP_009276903.1 | NC_030947_p6 | hypothetical protein | phrog_6593 | unknown function | unknown function | 1 | 3541 | 3753 |
| YP_009276952.1 | NC_030947_p55 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 31861 | 32520 |
| YP_009276899.1 | NC_030947_p2 | XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 1502 | 1912 |
| YP_009276943.1 | NC_030947_p46 | hypothetical protein | phrog_18851 | unknown function | unknown function | 1 | 23645 | 24022 |