| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_030949 |
Definition |
Clostridium phage phiCTC2A, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
REFSEQ |
Length |
47020 |
Host Name |
Clostridium tetani |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
28.4 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009277265.1 | NC_030949_p58 | hypothetical protein | phrog_15809 | unknown function | unknown function | 1 | 37601 | 38683 |
| YP_009277256.1 | NC_030949_p49 | tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 27710 | 29755 |
| YP_009277208.1 | NC_030949_p1 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 37 | 1545 |
| YP_009277253.1 | NC_030949_p46 | hypothetical protein | phrog_6280 | unknown function | unknown function | 1 | 26695 | 27159 |
| YP_009277226.1 | NC_030949_p19 | general stress protein | phrog_3636 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 10608 | 11048 |
| YP_009277212.1 | NC_030949_p5 | Cro/Cl-type repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2715 | 3158 |
| YP_009277274.1 | NC_030949_p67 | DNA polymerase III subunit epsilon | phrog_14632 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 45739 | 46881 |
| YP_009277238.1 | NC_030949_p31 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 16575 | 17918 |
| YP_009277260.1 | NC_030949_p53 | hypothetical protein | phrog_16549 | unknown function | unknown function | 1 | 32143 | 33174 |
| YP_009277225.1 | NC_030949_p18 | hypothetical protein | phrog_19436 | unknown function | unknown function | 1 | 10447 | 10545 |
| YP_009277245.1 | NC_030949_p38 | hypothetical protein | phrog_909 | major head protein | head and packaging | 1 | 22735 | 23067 |
| YP_009277230.1 | NC_030949_p23 | hypothetical protein | phrog_17601 | unknown function | unknown function | 1 | 12015 | 12215 |
| YP_009277220.1 | NC_030949_p13 | hypothetical protein | phrog_10625 | unknown function | unknown function | 1 | 7835 | 8014 |
| YP_009277221.1 | NC_030949_p14 | replication protein DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8032 | 8910 |
| YP_009277218.1 | NC_030949_p11 | endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 5691 | 7034 |
| YP_009277251.1 | NC_030949_p44 | hypothetical protein | phrog_7585 | unknown function | unknown function | 1 | 25386 | 25805 |
| YP_009277236.1 | NC_030949_p29 | hypothetical protein | phrog_19778 | unknown function | unknown function | 1 | 14528 | 15616 |
| YP_009277259.1 | NC_030949_p52 | hypothetical protein | phrog_6376 | unknown function | unknown function | 1 | 31586 | 32146 |
| YP_009277222.1 | NC_030949_p15 | hypothetical protein | phrog_16121 | unknown function | unknown function | 1 | 8923 | 9297 |
| YP_009277261.1 | NC_030949_p54 | hypothetical protein | phrog_9485 | virion structural protein | head and packaging | 1 | 33177 | 34412 |
| YP_009277227.1 | NC_030949_p20 | hypothetical protein | phrog_10701 | unknown function | unknown function | 1 | 11533 | 11694 |
| YP_009277255.1 | NC_030949_p48 | hypothetical protein | phrog_1315 | unknown function | unknown function | 1 | 27326 | 27652 |
| YP_009277235.1 | NC_030949_p28 | hypothetical protein | phrog_17522 | unknown function | unknown function | 1 | 13957 | 14157 |
| YP_009277264.1 | NC_030949_p57 | hypothetical protein | phrog_7317 | unknown function | unknown function | 1 | 36592 | 37590 |
| YP_009277242.1 | NC_030949_p35 | hypothetical protein | phrog_19570 | unknown function | unknown function | 1 | 21639 | 21839 |
| YP_009277252.1 | NC_030949_p45 | hypothetical protein | phrog_6686 | tail tube protein | tail | 1 | 25810 | 26682 |
| YP_009277234.1 | NC_030949_p27 | hypothetical protein | phrog_18632 | unknown function | unknown function | 1 | 13688 | 13930 |
| YP_009277219.1 | NC_030949_p12 | RecT family recombinase | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7036 | 7842 |
| YP_009277231.1 | NC_030949_p24 | XRE family transcriptional regulator | phrog_14101 | transcriptional regulator | transcription regulation | 1 | 12253 | 12564 |
| YP_009277209.1 | NC_030949_p2 | hypothetical protein | phrog_15901 | unknown function | unknown function | -1 | 1568 | 1852 |
| YP_009277240.1 | NC_030949_p33 | membrane spanning protein | phrog_21287 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 19432 | 19905 |
| YP_009277249.1 | NC_030949_p42 | hypothetical protein | phrog_8435 | unknown function | unknown function | 1 | 24667 | 25032 |
| YP_009277241.1 | NC_030949_p34 | head morphogenesis protein | phrog_21401 | pilot protein for DNA ejection | tail | 1 | 19942 | 21642 |
| YP_009277239.1 | NC_030949_p32 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 17918 | 19375 |
| YP_009277262.1 | NC_030949_p55 | hypothetical protein | phrog_14012 | unknown function | unknown function | 1 | 34425 | 36317 |
| YP_009277229.1 | NC_030949_p22 | hypothetical protein | phrog_9430 | unknown function | unknown function | 1 | 11875 | 12015 |
| YP_009277263.1 | NC_030949_p56 | hypothetical protein | phrog_8907 | unknown function | unknown function | 1 | 36322 | 36576 |
| YP_009277224.1 | NC_030949_p17 | hypothetical protein | phrog_11269 | unknown function | unknown function | 1 | 9804 | 10433 |
| YP_009277246.1 | NC_030949_p39 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 23087 | 24121 |
| YP_009277254.1 | NC_030949_p47 | hypothetical protein | phrog_6541 | unknown function | unknown function | 1 | 27098 | 27313 |
| YP_009277232.1 | NC_030949_p25 | siderophore-interacting protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 12576 | 13043 |
| YP_009277244.1 | NC_030949_p37 | capsid scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 22103 | 22720 |
| YP_009277250.1 | NC_030949_p43 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 25037 | 25381 |
| YP_009277271.1 | NC_030949_p64 | hypothetical protein | phrog_17559 | unknown function | unknown function | 1 | 43219 | 44271 |
| YP_009277267.1 | NC_030949_p60 | hypothetical protein | phrog_21039 | unknown function | unknown function | 1 | 39738 | 40472 |
| YP_009277210.1 | NC_030949_p3 | hypothetical protein | phrog_5553 | unknown function | unknown function | -1 | 1870 | 2214 |
| YP_009277266.1 | NC_030949_p59 | hypothetical protein | phrog_10667 | unknown function | unknown function | 1 | 38759 | 39544 |
| YP_009277213.1 | NC_030949_p6 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3319 | 3534 |
| YP_009277243.1 | NC_030949_p36 | hypothetical protein | phrog_1048 | unknown function | unknown function | 1 | 21903 | 22103 |
| YP_009277214.1 | NC_030949_p7 | kilA anti-repressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3550 | 4353 |
| YP_009277247.1 | NC_030949_p40 | hypothetical protein | phrog_5133 | unknown function | unknown function | 1 | 24177 | 24365 |
| YP_009277216.1 | NC_030949_p9 | hypothetical protein | phrog_15837 | unknown function | unknown function | 1 | 4885 | 5019 |
| YP_009277257.1 | NC_030949_p50 | hypothetical protein | phrog_1887 | tail protein | tail | 1 | 30144 | 31241 |
| YP_009277228.1 | NC_030949_p21 | hypothetical protein | phrog_1455 | unknown function | unknown function | 1 | 11675 | 11872 |
| YP_009277269.1 | NC_030949_p62 | holin | phrog_1129 | holin | lysis | 1 | 41916 | 42185 |
| YP_009277258.1 | NC_030949_p51 | hypothetical protein | phrog_13713 | unknown function | unknown function | 1 | 31241 | 31573 |
| YP_009277211.1 | NC_030949_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2241 | 2699 |
| YP_009277215.1 | NC_030949_p8 | hypothetical protein | phrog_15040 | unknown function | unknown function | -1 | 4386 | 4760 |
| YP_009277270.1 | NC_030949_p63 | N-acetylmuramoyl-L-alanine amidase | phrog_10967 | endolysin | lysis | 1 | 42186 | 42986 |
| YP_009277273.1 | NC_030949_p66 | hypothetical protein | phrog_18586 | unknown function | unknown function | 1 | 44580 | 45386 |
| YP_009277233.1 | NC_030949_p26 | hypothetical protein | phrog_3928 | unknown function | unknown function | 1 | 13280 | 13456 |
| YP_009277237.1 | NC_030949_p30 | terminase small subunit | phrog_2606 | terminase small subunit | head and packaging | 1 | 15662 | 16585 |
| YP_009277248.1 | NC_030949_p41 | hypothetical protein | phrog_4020 | unknown function | unknown function | 1 | 24368 | 24670 |
| YP_009277217.1 | NC_030949_p10 | hypothetical protein | phrog_16982 | unknown function | unknown function | 1 | 5174 | 5605 |
| YP_009277223.1 | NC_030949_p16 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9379 | 9807 |
| YP_009277272.1 | NC_030949_p65 | hypothetical protein | phrog_18087 | unknown function | unknown function | 1 | 44219 | 44587 |
| YP_009277268.1 | NC_030949_p61 | hemolysin XhlA | phrog_1193 | hemolysin | other | 1 | 41671 | 41904 |