Genomic map of Clostridium phage phiCTC2A (NC_030949)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_030949
Definition
Clostridium phage phiCTC2A, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
REFSEQ
Length
47020
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
28.4
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009277265.1 NC_030949_p58 hypothetical protein phrog_15809 unknown function unknown function 1 37601 38683
YP_009277256.1 NC_030949_p49 tail tape measure protein phrog_28 tail length tape measure protein tail 1 27710 29755
YP_009277208.1 NC_030949_p1 serine recombinase phrog_95 integrase integration and excision -1 37 1545
YP_009277253.1 NC_030949_p46 hypothetical protein phrog_6280 unknown function unknown function 1 26695 27159
YP_009277226.1 NC_030949_p19 general stress protein phrog_3636 DNA binding protein DNA, RNA and nucleotide metabolism -1 10608 11048
YP_009277212.1 NC_030949_p5 Cro/Cl-type repressor phrog_8 transcriptional regulator transcription regulation -1 2715 3158
YP_009277274.1 NC_030949_p67 DNA polymerase III subunit epsilon phrog_14632 DNA polymerase DNA, RNA and nucleotide metabolism 1 45739 46881
YP_009277238.1 NC_030949_p31 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16575 17918
YP_009277260.1 NC_030949_p53 hypothetical protein phrog_16549 unknown function unknown function 1 32143 33174
YP_009277225.1 NC_030949_p18 hypothetical protein phrog_19436 unknown function unknown function 1 10447 10545
YP_009277245.1 NC_030949_p38 hypothetical protein phrog_909 major head protein head and packaging 1 22735 23067
YP_009277230.1 NC_030949_p23 hypothetical protein phrog_17601 unknown function unknown function 1 12015 12215
YP_009277220.1 NC_030949_p13 hypothetical protein phrog_10625 unknown function unknown function 1 7835 8014
YP_009277221.1 NC_030949_p14 replication protein DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 8032 8910
YP_009277218.1 NC_030949_p11 endonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 5691 7034
YP_009277251.1 NC_030949_p44 hypothetical protein phrog_7585 unknown function unknown function 1 25386 25805
YP_009277236.1 NC_030949_p29 hypothetical protein phrog_19778 unknown function unknown function 1 14528 15616
YP_009277259.1 NC_030949_p52 hypothetical protein phrog_6376 unknown function unknown function 1 31586 32146
YP_009277222.1 NC_030949_p15 hypothetical protein phrog_16121 unknown function unknown function 1 8923 9297
YP_009277261.1 NC_030949_p54 hypothetical protein phrog_9485 virion structural protein head and packaging 1 33177 34412
YP_009277227.1 NC_030949_p20 hypothetical protein phrog_10701 unknown function unknown function 1 11533 11694
YP_009277255.1 NC_030949_p48 hypothetical protein phrog_1315 unknown function unknown function 1 27326 27652
YP_009277235.1 NC_030949_p28 hypothetical protein phrog_17522 unknown function unknown function 1 13957 14157
YP_009277264.1 NC_030949_p57 hypothetical protein phrog_7317 unknown function unknown function 1 36592 37590
YP_009277242.1 NC_030949_p35 hypothetical protein phrog_19570 unknown function unknown function 1 21639 21839
YP_009277252.1 NC_030949_p45 hypothetical protein phrog_6686 tail tube protein tail 1 25810 26682
YP_009277234.1 NC_030949_p27 hypothetical protein phrog_18632 unknown function unknown function 1 13688 13930
YP_009277219.1 NC_030949_p12 RecT family recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7036 7842
YP_009277231.1 NC_030949_p24 XRE family transcriptional regulator phrog_14101 transcriptional regulator transcription regulation 1 12253 12564
YP_009277209.1 NC_030949_p2 hypothetical protein phrog_15901 unknown function unknown function -1 1568 1852
YP_009277240.1 NC_030949_p33 membrane spanning protein phrog_21287 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 19432 19905
YP_009277249.1 NC_030949_p42 hypothetical protein phrog_8435 unknown function unknown function 1 24667 25032
YP_009277241.1 NC_030949_p34 head morphogenesis protein phrog_21401 pilot protein for DNA ejection tail 1 19942 21642
YP_009277239.1 NC_030949_p32 portal protein phrog_64 portal protein head and packaging 1 17918 19375
YP_009277262.1 NC_030949_p55 hypothetical protein phrog_14012 unknown function unknown function 1 34425 36317
YP_009277229.1 NC_030949_p22 hypothetical protein phrog_9430 unknown function unknown function 1 11875 12015
YP_009277263.1 NC_030949_p56 hypothetical protein phrog_8907 unknown function unknown function 1 36322 36576
YP_009277224.1 NC_030949_p17 hypothetical protein phrog_11269 unknown function unknown function 1 9804 10433
YP_009277246.1 NC_030949_p39 major capsid protein phrog_29 major head protein head and packaging 1 23087 24121
YP_009277254.1 NC_030949_p47 hypothetical protein phrog_6541 unknown function unknown function 1 27098 27313
YP_009277232.1 NC_030949_p25 siderophore-interacting protein phrog_36 transcriptional regulator transcription regulation 1 12576 13043
YP_009277244.1 NC_030949_p37 capsid scaffolding protein phrog_194 head scaffolding protein head and packaging 1 22103 22720
YP_009277250.1 NC_030949_p43 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 25037 25381
YP_009277271.1 NC_030949_p64 hypothetical protein phrog_17559 unknown function unknown function 1 43219 44271
YP_009277267.1 NC_030949_p60 hypothetical protein phrog_21039 unknown function unknown function 1 39738 40472
YP_009277210.1 NC_030949_p3 hypothetical protein phrog_5553 unknown function unknown function -1 1870 2214
YP_009277266.1 NC_030949_p59 hypothetical protein phrog_10667 unknown function unknown function 1 38759 39544
YP_009277213.1 NC_030949_p6 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 3319 3534
YP_009277243.1 NC_030949_p36 hypothetical protein phrog_1048 unknown function unknown function 1 21903 22103
YP_009277214.1 NC_030949_p7 kilA anti-repressor protein phrog_130 anti-repressor Ant transcription regulation 1 3550 4353
YP_009277247.1 NC_030949_p40 hypothetical protein phrog_5133 unknown function unknown function 1 24177 24365
YP_009277216.1 NC_030949_p9 hypothetical protein phrog_15837 unknown function unknown function 1 4885 5019
YP_009277257.1 NC_030949_p50 hypothetical protein phrog_1887 tail protein tail 1 30144 31241
YP_009277228.1 NC_030949_p21 hypothetical protein phrog_1455 unknown function unknown function 1 11675 11872
YP_009277269.1 NC_030949_p62 holin phrog_1129 holin lysis 1 41916 42185
YP_009277258.1 NC_030949_p51 hypothetical protein phrog_13713 unknown function unknown function 1 31241 31573
YP_009277211.1 NC_030949_p4 hypothetical protein phrog_87 metallo-protease other -1 2241 2699
YP_009277215.1 NC_030949_p8 hypothetical protein phrog_15040 unknown function unknown function -1 4386 4760
YP_009277270.1 NC_030949_p63 N-acetylmuramoyl-L-alanine amidase phrog_10967 endolysin lysis 1 42186 42986
YP_009277273.1 NC_030949_p66 hypothetical protein phrog_18586 unknown function unknown function 1 44580 45386
YP_009277233.1 NC_030949_p26 hypothetical protein phrog_3928 unknown function unknown function 1 13280 13456
YP_009277237.1 NC_030949_p30 terminase small subunit phrog_2606 terminase small subunit head and packaging 1 15662 16585
YP_009277248.1 NC_030949_p41 hypothetical protein phrog_4020 unknown function unknown function 1 24368 24670
YP_009277217.1 NC_030949_p10 hypothetical protein phrog_16982 unknown function unknown function 1 5174 5605
YP_009277223.1 NC_030949_p16 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9379 9807
YP_009277272.1 NC_030949_p65 hypothetical protein phrog_18087 unknown function unknown function 1 44219 44587
YP_009277268.1 NC_030949_p61 hemolysin XhlA phrog_1193 hemolysin other 1 41671 41904