| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031001 |
Definition |
Gordonia phage Terapin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Terapinvirus; Gordonia virus Terapin. |
DB of origin |
REFSEQ |
Length |
66611 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
59.55 |
Number of singletons |
46 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009277772.1 | NC_031001_p33 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 27978 | 28466 |
| YP_009277827.1 | NC_031001_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61809 | 62303 |
| YP_009277797.1 | NC_031001_p58 | hypothetical protein | phrog_9460 | methyltransferase | other | 1 | 42735 | 43478 |
| YP_009277809.1 | NC_031001_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50940 | 51599 |
| YP_009277748.1 | NC_031001_p9 | hypothetical protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5939 | 6685 |
| YP_009277770.1 | NC_031001_p31 | hypothetical protein | phrog_9752 | holin | lysis | 1 | 27125 | 27529 |
| YP_009277757.1 | NC_031001_p18 | hypothetical protein | phrog_5278 | unknown function | unknown function | 1 | 10662 | 10847 |
| YP_009277811.1 | NC_031001_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51942 | 52160 |
| YP_009277773.1 | NC_031001_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28466 | 28834 |
| YP_009277802.1 | NC_031001_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45753 | 45926 |
| YP_009277752.1 | NC_031001_p13 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 8817 | 9137 |
| YP_009277808.1 | NC_031001_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50410 | 50934 |
| YP_009277776.1 | NC_031001_p37 | hypothetical protein | phrog_1342 | unknown function | unknown function | 1 | 30953 | 31420 |
| YP_009277763.1 | NC_031001_p24 | minor tail protein | phrog_1885 | minor tail protein | tail | 1 | 20204 | 21337 |
| YP_009277831.1 | NC_031001_p92 | hypothetical protein | phrog_7407 | unknown function | unknown function | 1 | 63182 | 64579 |
| YP_009277796.1 | NC_031001_p57 | RecA-like recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41806 | 42735 |
| YP_009277778.1 | NC_031001_p39 | hypothetical protein | phrog_16415 | unknown function | unknown function | 1 | 32275 | 32700 |
| YP_009277822.1 | NC_031001_p83 | RHH DNA binding protein | singleton | unknown function | unknown function | 1 | 56739 | 56924 |
| YP_009277801.1 | NC_031001_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45191 | 45772 |
| YP_009277769.1 | NC_031001_p30 | lysin A | phrog_2998 | endolysin | lysis | 1 | 25971 | 27116 |
| YP_009277835.1 | NC_031001_p96 | lysin B | phrog_102 | endolysin | lysis | 1 | 65473 | 66189 |
| YP_009277781.1 | NC_031001_p42 | hypothetical protein | phrog_2355 | unknown function | unknown function | 1 | 33095 | 33541 |
| YP_009277806.1 | NC_031001_p67 | DNA polymerase III alpha subunit | phrog_11165 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 47717 | 50152 |
| YP_009277803.1 | NC_031001_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45936 | 46523 |
| YP_009277793.1 | NC_031001_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39605 | 40144 |
| YP_009277788.1 | NC_031001_p49 | hypothetical protein | phrog_5307 | unknown function | unknown function | 1 | 35794 | 36414 |
| YP_009277767.1 | NC_031001_p28 | minor tail protein | phrog_819 | tail protein | tail | 1 | 24381 | 25379 |
| YP_009277741.1 | NC_031001_p2 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1538 | 3241 |
| YP_009277779.1 | NC_031001_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32702 | 32821 |
| YP_009277826.1 | NC_031001_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61243 | 61812 |
| YP_009277813.1 | NC_031001_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53386 | 53688 |
| YP_009277759.1 | NC_031001_p20 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 11749 | 12312 |
| YP_009277810.1 | NC_031001_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51592 | 51945 |
| YP_009277768.1 | NC_031001_p29 | minor tail protein | phrog_7114 | minor tail protein | tail | 1 | 25376 | 25954 |
| YP_009277817.1 | NC_031001_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54404 | 55051 |
| YP_009277745.1 | NC_031001_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4196 | 4468 |
| YP_009277794.1 | NC_031001_p55 | DEAD-like helicase | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40488 | 41633 |
| YP_009277815.1 | NC_031001_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53937 | 54251 |
| YP_009277789.1 | NC_031001_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36414 | 36569 |
| YP_009277747.1 | NC_031001_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5498 | 5872 |
| YP_009277764.1 | NC_031001_p25 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21340 | 23304 |
| YP_009277755.1 | NC_031001_p16 | head-to-tail connector protein | phrog_4995 | unknown function | unknown function | 1 | 9866 | 10276 |
| YP_009277829.1 | NC_031001_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62551 | 62895 |
| YP_009277753.1 | NC_031001_p14 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 9137 | 9526 |
| YP_009277799.1 | NC_031001_p60 | oxidoreductase | phrog_8720 | unknown function | unknown function | 1 | 43720 | 44595 |
| YP_009277740.1 | NC_031001_p1 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1 | 1509 |
| YP_009277820.1 | NC_031001_p81 | resolvase | phrog_1981 | unknown function | unknown function | 1 | 55698 | 56519 |
| YP_009277782.1 | NC_031001_p43 | hypothetical protein | phrog_421 | unknown function | unknown function | 1 | 33538 | 34578 |
| YP_009277766.1 | NC_031001_p27 | minor tail protein | phrog_13286 | tail protein | tail | 1 | 23624 | 24409 |
| YP_009277836.1 | NC_031001_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66211 | 66447 |
| YP_009277785.1 | NC_031001_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35026 | 35430 |
| YP_009277765.1 | NC_031001_p26 | hypothetical protein | phrog_10981 | unknown function | unknown function | 1 | 23306 | 23614 |
| YP_009277780.1 | NC_031001_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32886 | 33095 |
| YP_009277744.1 | NC_031001_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4050 | 4196 |
| YP_009277762.1 | NC_031001_p23 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 19319 | 20188 |
| YP_009277795.1 | NC_031001_p56 | hypothetical protein | phrog_8491 | unknown function | unknown function | 1 | 41633 | 41815 |
| YP_009277751.1 | NC_031001_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8251 | 8748 |
| YP_009277791.1 | NC_031001_p52 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38667 | 39068 |
| YP_009277756.1 | NC_031001_p17 | hypothetical protein | phrog_14208 | unknown function | unknown function | 1 | 10309 | 10662 |
| YP_009277749.1 | NC_031001_p10 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 6697 | 7074 |
| YP_009277750.1 | NC_031001_p11 | major capsid protein | phrog_3990 | major head protein | head and packaging | 1 | 7088 | 8251 |
| YP_009277816.1 | NC_031001_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54241 | 54402 |
| YP_009277792.1 | NC_031001_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39061 | 39465 |
| YP_009277818.1 | NC_031001_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55044 | 55349 |
| YP_009277833.1 | NC_031001_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 64860 | 65030 |
| YP_009277814.1 | NC_031001_p75 | hypothetical protein | phrog_19886 | unknown function | unknown function | 1 | 53685 | 53855 |
| YP_009277787.1 | NC_031001_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35594 | 35797 |
| YP_009277743.1 | NC_031001_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3454 | 4041 |
| YP_009277819.1 | NC_031001_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55346 | 55705 |
| YP_009277771.1 | NC_031001_p32 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 27531 | 27977 |
| YP_009277774.1 | NC_031001_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29730 | 30323 |
| YP_009277798.1 | NC_031001_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43482 | 43595 |
| YP_009277824.1 | NC_031001_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60024 | 60803 |
| YP_009277790.1 | NC_031001_p51 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 36616 | 38670 |
| YP_009277761.1 | NC_031001_p22 | tape measure protein | phrog_6435 | tail length tape measure protein | tail | 1 | 12549 | 19319 |
| YP_009277760.1 | NC_031001_p21 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 12350 | 12547 |
| YP_009277786.1 | NC_031001_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35430 | 35597 |
| YP_009277758.1 | NC_031001_p19 | major tail protein | phrog_4971 | major tail protein | tail | 1 | 10844 | 11707 |
| YP_009277830.1 | NC_031001_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62892 | 63182 |
| YP_009277812.1 | NC_031001_p73 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 52169 | 53389 |
| YP_009277807.1 | NC_031001_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50196 | 50336 |
| YP_009277800.1 | NC_031001_p61 | methyltransferase | phrog_6636 | methyltransferase | other | 1 | 44592 | 45194 |
| YP_009277825.1 | NC_031001_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60857 | 61234 |
| YP_009277784.1 | NC_031001_p45 | hypothetical protein | phrog_2660 | unknown function | unknown function | 1 | 34763 | 35026 |
| YP_009277828.1 | NC_031001_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62300 | 62554 |
| YP_009277742.1 | NC_031001_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3257 | 3454 |
| YP_009277805.1 | NC_031001_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47473 | 47730 |
| YP_009277804.1 | NC_031001_p65 | DNA polymerase III alpha subunit | phrog_7513 | unknown function | unknown function | 1 | 46520 | 47476 |
| YP_009277823.1 | NC_031001_p84 | DNA primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 56925 | 59786 |
| YP_009277821.1 | NC_031001_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56516 | 56746 |
| YP_009277783.1 | NC_031001_p44 | hypothetical protein | phrog_23287 | unknown function | unknown function | 1 | 34575 | 34766 |
| YP_009277754.1 | NC_031001_p15 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 9519 | 9869 |
| YP_009277777.1 | NC_031001_p38 | hypothetical protein | phrog_6032 | unknown function | unknown function | 1 | 31422 | 32201 |
| YP_009277746.1 | NC_031001_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4674 | 5429 |
| YP_009277834.1 | NC_031001_p95 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65027 | 65473 |
| YP_009277775.1 | NC_031001_p36 | hypothetical protein | phrog_20898 | unknown function | unknown function | 1 | 30423 | 30863 |
| YP_009277832.1 | NC_031001_p93 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 64576 | 64863 |