| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031002 |
Definition |
Lactococcus phage M6162, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus. |
DB of origin |
REFSEQ |
Length |
21697 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
38 |
%GC |
35.79 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009277837.1 | NC_031002_p1 | transcriptional regulator | phrog_12561 | transcriptional regulator | transcription regulation | -1 | 265 | 435 |
| YP_009277871.1 | NC_031002_p35 | hypothetical protein | phrog_10648 | unknown function | unknown function | 1 | 17616 | 19502 |
| YP_009277874.1 | NC_031002_p38 | holin | phrog_9407 | holin | lysis | 1 | 21242 | 21532 |
| YP_009277852.1 | NC_031002_p16 | hypothetical protein | phrog_10596 | unknown function | unknown function | -1 | 4958 | 5347 |
| YP_009277853.1 | NC_031002_p17 | DNA polymerase | phrog_10577 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 5347 | 5727 |
| YP_009277861.1 | NC_031002_p25 | capsid and scaffold protein | phrog_3270 | head maturation protease | head and packaging | 1 | 9898 | 11340 |
| YP_009277848.1 | NC_031002_p12 | transcriptional regulator | phrog_10808 | transcriptional regulator | transcription regulation | -1 | 3743 | 3928 |
| YP_009277870.1 | NC_031002_p34 | hypothetical protein | phrog_10033 | unknown function | unknown function | 1 | 17324 | 17623 |
| YP_009277846.1 | NC_031002_p10 | hypothetical protein | phrog_11155 | unknown function | unknown function | -1 | 3323 | 3526 |
| YP_009277844.1 | NC_031002_p8 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2563 | 3102 |
| YP_009277847.1 | NC_031002_p11 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 3526 | 3771 |
| YP_009277849.1 | NC_031002_p13 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 3942 | 4382 |
| YP_009277859.1 | NC_031002_p23 | N-acetylmuramoyl-L-alanine amidase | phrog_7 | endolysin | lysis | 1 | 8402 | 9097 |
| YP_009277873.1 | NC_031002_p37 | capsid and scaffold protein | phrog_10326 | virion structural protein | head and packaging | 1 | 20027 | 21220 |
| YP_009277862.1 | NC_031002_p26 | hypothetical protein | phrog_10227 | unknown function | unknown function | 1 | 11359 | 12063 |
| YP_009277841.1 | NC_031002_p5 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 1452 | 1952 |
| YP_009277866.1 | NC_031002_p30 | hypothetical protein | phrog_10523 | unknown function | unknown function | 1 | 13213 | 13617 |
| YP_009277855.1 | NC_031002_p19 | hypothetical protein | phrog_10138 | unknown function | unknown function | -1 | 6699 | 6899 |
| YP_009277840.1 | NC_031002_p4 | hypothetical protein | phrog_10525 | unknown function | unknown function | -1 | 1127 | 1450 |
| YP_009277838.1 | NC_031002_p2 | hypothetical protein | phrog_10769 | unknown function | unknown function | -1 | 436 | 810 |
| YP_009277845.1 | NC_031002_p9 | hypothetical protein | phrog_10559 | unknown function | unknown function | -1 | 3102 | 3254 |
| YP_009277860.1 | NC_031002_p24 | capsid and scaffold protein | phrog_10159 | virion structural protein | head and packaging | 1 | 9108 | 9947 |
| YP_009277851.1 | NC_031002_p15 | hypothetical protein | phrog_9988 | unknown function | unknown function | -1 | 4729 | 4902 |
| YP_009277842.1 | NC_031002_p6 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 1949 | 2113 |
| YP_009277872.1 | NC_031002_p36 | capsid and scaffold protein | phrog_10067 | virion structural protein | head and packaging | 1 | 19504 | 20034 |
| YP_009277869.1 | NC_031002_p33 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 15768 | 17324 |
| YP_009277857.1 | NC_031002_p21 | hypothetical protein | phrog_10074 | unknown function | unknown function | 1 | 7726 | 7875 |
| YP_009277864.1 | NC_031002_p28 | hypothetical protein | phrog_10561 | unknown function | unknown function | 1 | 12771 | 13025 |
| YP_009277850.1 | NC_031002_p14 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 4379 | 4729 |
| YP_009277863.1 | NC_031002_p27 | tail fibers protein | phrog_2634 | major tail protein | tail | 1 | 12081 | 12698 |
| YP_009277865.1 | NC_031002_p29 | hypothetical protein | phrog_12461 | unknown function | unknown function | 1 | 13067 | 13237 |
| YP_009277854.1 | NC_031002_p18 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 5798 | 6697 |
| YP_009277843.1 | NC_031002_p7 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2126 | 2497 |
| YP_009277868.1 | NC_031002_p32 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15469 | 15756 |
| YP_009277856.1 | NC_031002_p20 | hypothetical protein | phrog_11709 | unknown function | unknown function | -1 | 6896 | 7042 |
| YP_009277839.1 | NC_031002_p3 | hypothetical protein | phrog_10148 | unknown function | unknown function | -1 | 832 | 1134 |
| YP_009277858.1 | NC_031002_p22 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7886 | 8371 |
| YP_009277867.1 | NC_031002_p31 | tail length tape-measure protein | phrog_9145 | tail length tape measure protein | tail | 1 | 13610 | 15472 |