Genomic map of Gordonia phage Nyceirae (NC_031004)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031004
Definition
Gordonia phage Nyceirae, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nyceiraevirus; Gordonia virus Nyceirae.
DB of origin
REFSEQ
Length
41857
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
67.51
Number of singletons
21
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009277919.1 NC_031004_p1 hypothetical protein phrog_23761 unknown function unknown function 1 46 237
YP_009277963.1 NC_031004_p45 hypothetical protein phrog_20805 unknown function unknown function 1 32724 33047
YP_009277930.1 NC_031004_p12 head-to-tail connector protein phrog_37616 head-tail connector protein connector 1 8420 8725
YP_009277978.1 NC_031004_p60 hypothetical protein singleton unknown function unknown function 1 40868 41308
YP_009277933.1 NC_031004_p15 head-to-tail connector protein singleton unknown function unknown function 1 9516 9920
YP_009277939.1 NC_031004_p21 tape measure protein phrog_9696 tail length tape measure protein tail 1 12425 17932
YP_009277935.1 NC_031004_p17 head-to-tail connector protein phrog_123 tail terminator connector 1 10235 10702
YP_009277968.1 NC_031004_p50 hypothetical protein phrog_20160 unknown function unknown function 1 35999 36289
YP_009277943.1 NC_031004_p25 lysin A phrog_2998 endolysin lysis 1 20812 21852
YP_009277922.1 NC_031004_p4 terminase small subunit phrog_226 minor tail protein tail 1 828 1346
YP_009277947.1 NC_031004_p29 minor tail protein phrog_1565 minor tail protein tail 1 23200 24264
YP_009277951.1 NC_031004_p33 hypothetical protein phrog_12868 unknown function unknown function 1 28295 28468
YP_009277941.1 NC_031004_p23 minor tail protein phrog_110 minor tail protein tail 1 18768 20426
YP_009277971.1 NC_031004_p53 hypothetical protein singleton unknown function unknown function 1 37419 37688
YP_009277970.1 NC_031004_p52 hypothetical protein singleton unknown function unknown function 1 37093 37416
YP_009277959.1 NC_031004_p41 hypothetical protein phrog_8218 unknown function unknown function 1 31490 31639
YP_009277945.1 NC_031004_p27 hypothetical protein phrog_1298 minor tail protein tail 1 22280 22768
YP_009277946.1 NC_031004_p28 hypothetical protein phrog_726 unknown function unknown function 1 22758 23174
YP_009277949.1 NC_031004_p31 minor tail protein phrog_416 minor tail protein tail 1 26839 27909
YP_009277928.1 NC_031004_p10 hypothetical protein singleton unknown function unknown function 1 6731 7381
YP_009277923.1 NC_031004_p5 terminase large subunit phrog_19179 terminase large subunit head and packaging 1 1339 2382
YP_009277921.1 NC_031004_p3 hypothetical protein phrog_8171 unknown function unknown function 1 430 828
YP_009277976.1 NC_031004_p58 hypothetical protein singleton unknown function unknown function 1 40435 40590
YP_009277961.1 NC_031004_p43 hypothetical protein phrog_15317 unknown function unknown function 1 31992 32315
YP_009277960.1 NC_031004_p42 hypothetical protein phrog_18626 unknown function unknown function 1 31636 31995
YP_009277958.1 NC_031004_p40 hypothetical protein singleton unknown function unknown function 1 31180 31443
YP_009277937.1 NC_031004_p19 tail assembly chaperone singleton unknown function unknown function 1 11455 11934
YP_009277972.1 NC_031004_p54 HNH endonuclease domain protein phrog_15463 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37807 38916
YP_009277964.1 NC_031004_p46 HTH DNA binding protein phrog_6218 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 33044 34588
YP_009277920.1 NC_031004_p2 hypothetical protein singleton unknown function unknown function 1 237 437
YP_009277940.1 NC_031004_p22 minor tail protein phrog_106 minor tail protein tail 1 17929 18777
YP_009277948.1 NC_031004_p30 minor tail protein phrog_346 minor tail protein tail 1 24275 26842
YP_009277926.1 NC_031004_p8 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 4517 6262
YP_009277932.1 NC_031004_p14 head-to-tail connector protein phrog_22663 head-tail connector protein connector 1 9136 9510
YP_009277966.1 NC_031004_p48 hypothetical protein singleton unknown function unknown function 1 34724 34960
YP_009277953.1 NC_031004_p35 hypothetical protein singleton unknown function unknown function 1 29523 29690
YP_009277936.1 NC_031004_p18 major tail protein phrog_117 major tail protein tail 1 10844 11419
YP_009277957.1 NC_031004_p39 hypothetical protein singleton unknown function unknown function -1 30587 31045
YP_009277924.1 NC_031004_p6 terminase large subunit phrog_21277 terminase large subunit head and packaging 1 2363 3010
YP_009277931.1 NC_031004_p13 head-to-tail connector protein phrog_17763 head-tail adaptor Ad1 connector 1 8750 9136
YP_009277925.1 NC_031004_p7 portal protein phrog_104 portal protein head and packaging 1 3039 4517
YP_009277950.1 NC_031004_p32 hypothetical protein phrog_240 head protein head and packaging 1 27931 28293
YP_009277929.1 NC_031004_p11 major capsid protein phrog_212 major head protein head and packaging 1 7436 8380
YP_009277977.1 NC_031004_p59 hypothetical protein singleton unknown function unknown function 1 40587 40871
YP_009277944.1 NC_031004_p26 holin phrog_9752 holin lysis 1 21873 22283
YP_009277938.1 NC_031004_p20 tail assembly chaperone singleton unknown function unknown function 1 11910 12410
YP_009277934.1 NC_031004_p16 head-to-tail connector protein phrog_24636 head-tail connector protein connector 1 9924 10235
YP_009277975.1 NC_031004_p57 hypothetical protein singleton unknown function unknown function 1 40250 40438
YP_009277967.1 NC_031004_p49 DNA translocase phrog_12598 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34957 36006
YP_009277974.1 NC_031004_p56 hypothetical protein singleton unknown function unknown function 1 39831 40253
YP_009277962.1 NC_031004_p44 hypothetical protein phrog_20407 unknown function unknown function 1 32308 32727
YP_009277927.1 NC_031004_p9 hypothetical protein phrog_4347 unknown function unknown function 1 6259 6519
YP_009277955.1 NC_031004_p37 hypothetical protein singleton unknown function unknown function -1 30030 30257
YP_009277952.1 NC_031004_p34 integrase phrog_1 integrase integration and excision -1 28474 29373
YP_009277973.1 NC_031004_p55 hypothetical protein singleton unknown function unknown function 1 38989 39834
YP_009277954.1 NC_031004_p36 immunity repressor singleton unknown function unknown function -1 29677 30000
YP_009277942.1 NC_031004_p24 minor tail protein singleton unknown function unknown function 1 20423 20815
YP_009277965.1 NC_031004_p47 hypothetical protein phrog_33323 unknown function unknown function 1 34591 34734
YP_009277969.1 NC_031004_p51 lysin B phrog_102 endolysin lysis 1 36282 37091
YP_009277956.1 NC_031004_p38 HTH DNA binding protein singleton unknown function unknown function 1 30354 30581