| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031004 |
Definition |
Gordonia phage Nyceirae, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nyceiraevirus; Gordonia virus Nyceirae. |
DB of origin |
REFSEQ |
Length |
41857 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
67.51 |
Number of singletons |
21 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009277919.1 | NC_031004_p1 | hypothetical protein | phrog_23761 | unknown function | unknown function | 1 | 46 | 237 |
| YP_009277963.1 | NC_031004_p45 | hypothetical protein | phrog_20805 | unknown function | unknown function | 1 | 32724 | 33047 |
| YP_009277930.1 | NC_031004_p12 | head-to-tail connector protein | phrog_37616 | head-tail connector protein | connector | 1 | 8420 | 8725 |
| YP_009277978.1 | NC_031004_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40868 | 41308 |
| YP_009277933.1 | NC_031004_p15 | head-to-tail connector protein | singleton | unknown function | unknown function | 1 | 9516 | 9920 |
| YP_009277939.1 | NC_031004_p21 | tape measure protein | phrog_9696 | tail length tape measure protein | tail | 1 | 12425 | 17932 |
| YP_009277935.1 | NC_031004_p17 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 10235 | 10702 |
| YP_009277968.1 | NC_031004_p50 | hypothetical protein | phrog_20160 | unknown function | unknown function | 1 | 35999 | 36289 |
| YP_009277943.1 | NC_031004_p25 | lysin A | phrog_2998 | endolysin | lysis | 1 | 20812 | 21852 |
| YP_009277922.1 | NC_031004_p4 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 828 | 1346 |
| YP_009277947.1 | NC_031004_p29 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 23200 | 24264 |
| YP_009277951.1 | NC_031004_p33 | hypothetical protein | phrog_12868 | unknown function | unknown function | 1 | 28295 | 28468 |
| YP_009277941.1 | NC_031004_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 18768 | 20426 |
| YP_009277971.1 | NC_031004_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37419 | 37688 |
| YP_009277970.1 | NC_031004_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37093 | 37416 |
| YP_009277959.1 | NC_031004_p41 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 31490 | 31639 |
| YP_009277945.1 | NC_031004_p27 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 22280 | 22768 |
| YP_009277946.1 | NC_031004_p28 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 22758 | 23174 |
| YP_009277949.1 | NC_031004_p31 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 26839 | 27909 |
| YP_009277928.1 | NC_031004_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6731 | 7381 |
| YP_009277923.1 | NC_031004_p5 | terminase large subunit | phrog_19179 | terminase large subunit | head and packaging | 1 | 1339 | 2382 |
| YP_009277921.1 | NC_031004_p3 | hypothetical protein | phrog_8171 | unknown function | unknown function | 1 | 430 | 828 |
| YP_009277976.1 | NC_031004_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40435 | 40590 |
| YP_009277961.1 | NC_031004_p43 | hypothetical protein | phrog_15317 | unknown function | unknown function | 1 | 31992 | 32315 |
| YP_009277960.1 | NC_031004_p42 | hypothetical protein | phrog_18626 | unknown function | unknown function | 1 | 31636 | 31995 |
| YP_009277958.1 | NC_031004_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31180 | 31443 |
| YP_009277937.1 | NC_031004_p19 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 11455 | 11934 |
| YP_009277972.1 | NC_031004_p54 | HNH endonuclease domain protein | phrog_15463 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37807 | 38916 |
| YP_009277964.1 | NC_031004_p46 | HTH DNA binding protein | phrog_6218 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 33044 | 34588 |
| YP_009277920.1 | NC_031004_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 237 | 437 |
| YP_009277940.1 | NC_031004_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17929 | 18777 |
| YP_009277948.1 | NC_031004_p30 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24275 | 26842 |
| YP_009277926.1 | NC_031004_p8 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 4517 | 6262 |
| YP_009277932.1 | NC_031004_p14 | head-to-tail connector protein | phrog_22663 | head-tail connector protein | connector | 1 | 9136 | 9510 |
| YP_009277966.1 | NC_031004_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34724 | 34960 |
| YP_009277953.1 | NC_031004_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29523 | 29690 |
| YP_009277936.1 | NC_031004_p18 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10844 | 11419 |
| YP_009277957.1 | NC_031004_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30587 | 31045 |
| YP_009277924.1 | NC_031004_p6 | terminase large subunit | phrog_21277 | terminase large subunit | head and packaging | 1 | 2363 | 3010 |
| YP_009277931.1 | NC_031004_p13 | head-to-tail connector protein | phrog_17763 | head-tail adaptor Ad1 | connector | 1 | 8750 | 9136 |
| YP_009277925.1 | NC_031004_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3039 | 4517 |
| YP_009277950.1 | NC_031004_p32 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 27931 | 28293 |
| YP_009277929.1 | NC_031004_p11 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 7436 | 8380 |
| YP_009277977.1 | NC_031004_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40587 | 40871 |
| YP_009277944.1 | NC_031004_p26 | holin | phrog_9752 | holin | lysis | 1 | 21873 | 22283 |
| YP_009277938.1 | NC_031004_p20 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 11910 | 12410 |
| YP_009277934.1 | NC_031004_p16 | head-to-tail connector protein | phrog_24636 | head-tail connector protein | connector | 1 | 9924 | 10235 |
| YP_009277975.1 | NC_031004_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40250 | 40438 |
| YP_009277967.1 | NC_031004_p49 | DNA translocase | phrog_12598 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34957 | 36006 |
| YP_009277974.1 | NC_031004_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39831 | 40253 |
| YP_009277962.1 | NC_031004_p44 | hypothetical protein | phrog_20407 | unknown function | unknown function | 1 | 32308 | 32727 |
| YP_009277927.1 | NC_031004_p9 | hypothetical protein | phrog_4347 | unknown function | unknown function | 1 | 6259 | 6519 |
| YP_009277955.1 | NC_031004_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30030 | 30257 |
| YP_009277952.1 | NC_031004_p34 | integrase | phrog_1 | integrase | integration and excision | -1 | 28474 | 29373 |
| YP_009277973.1 | NC_031004_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38989 | 39834 |
| YP_009277954.1 | NC_031004_p36 | immunity repressor | singleton | unknown function | unknown function | -1 | 29677 | 30000 |
| YP_009277942.1 | NC_031004_p24 | minor tail protein | singleton | unknown function | unknown function | 1 | 20423 | 20815 |
| YP_009277965.1 | NC_031004_p47 | hypothetical protein | phrog_33323 | unknown function | unknown function | 1 | 34591 | 34734 |
| YP_009277969.1 | NC_031004_p51 | lysin B | phrog_102 | endolysin | lysis | 1 | 36282 | 37091 |
| YP_009277956.1 | NC_031004_p38 | HTH DNA binding protein | singleton | unknown function | unknown function | 1 | 30354 | 30581 |