| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031008 |
Definition |
Staphylococcus phage SLPW, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus SLPW. |
DB of origin |
REFSEQ |
Length |
17861 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
20 |
%GC |
29.35 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009278563.1 | NC_031008_p10 | holin | phrog_199 | holin | lysis | -1 | 7458 | 7880 |
| YP_009278554.1 | NC_031008_p1 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 467 | 769 |
| YP_009278561.1 | NC_031008_p8 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3645 | 5930 |
| YP_009278568.1 | NC_031008_p15 | major teichoic acid biosynthesis protein C | phrog_287 | minor tail protein | tail | -1 | 11971 | 13908 |
| YP_009278566.1 | NC_031008_p13 | minor tail protein | phrog_17481 | minor tail protein | tail | -1 | 10592 | 11149 |
| YP_009278557.1 | NC_031008_p4 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1466 | 1645 |
| YP_009278569.1 | NC_031008_p16 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 13921 | 14676 |
| YP_009278555.1 | NC_031008_p2 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 787 | 1023 |
| YP_009278573.1 | NC_031008_p20 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17080 | 17445 |
| YP_009278572.1 | NC_031008_p19 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 16885 | 17067 |
| YP_009278558.1 | NC_031008_p5 | hypothetical protein | phrog_8543 | unknown function | unknown function | 1 | 1679 | 1849 |
| YP_009278571.1 | NC_031008_p18 | capsid and scaffold protein | phrog_2006 | major head protein | head and packaging | -1 | 15667 | 16878 |
| YP_009278565.1 | NC_031008_p12 | tail fibers protein | phrog_21844 | tail protein | tail | -1 | 9702 | 10157 |
| YP_009278556.1 | NC_031008_p3 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1047 | 1415 |
| YP_009278560.1 | NC_031008_p7 | DNA packaging protein | phrog_2150 | terminase | head and packaging | 1 | 2382 | 3629 |
| YP_009278562.1 | NC_031008_p9 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6044 | 7483 |
| YP_009278570.1 | NC_031008_p17 | collar protein | phrog_2038 | upper collar connector | connector | -1 | 14669 | 15652 |
| YP_009278564.1 | NC_031008_p11 | tail fibers protein | phrog_2248 | tail protein | tail | -1 | 7882 | 9645 |
| YP_009278559.1 | NC_031008_p6 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 1852 | 2334 |
| YP_009278567.1 | NC_031008_p14 | N-acetylmuramoyl-L-alanine amidase | phrog_635 | endolysin | lysis | -1 | 11212 | 11964 |