Genomic map of Lactococcus phage D4412 (NC_031009)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031009
Definition
Lactococcus phage D4412, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus.
DB of origin
REFSEQ
Length
22884
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
40
%GC
35.43
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009278610.1 NC_031009_p37 hypothetical protein phrog_10648 unknown function unknown function 1 18274 20190
YP_009278595.1 NC_031009_p22 hypothetical protein phrog_11709 unknown function unknown function -1 7554 7694
YP_009278575.1 NC_031009_p2 hypothetical protein phrog_10769 unknown function unknown function -1 655 1029
YP_009278579.1 NC_031009_p6 hypothetical protein phrog_1295 unknown function unknown function -1 2221 2385
YP_009278602.1 NC_031009_p29 tail fibers protein phrog_2634 major tail protein tail 1 12735 13352
YP_009278593.1 NC_031009_p20 hypothetical protein phrog_1284 unknown function unknown function -1 6345 7244
YP_009278583.1 NC_031009_p10 hypothetical protein phrog_11155 unknown function unknown function -1 3553 3771
YP_009278611.1 NC_031009_p38 capsid and scaffold protein phrog_10067 virion structural protein head and packaging 1 20187 21164
YP_009278598.1 NC_031009_p25 N-acetylmuramoyl-L-alanine amidase phrog_7 endolysin lysis 1 9097 9750
YP_009278586.1 NC_031009_p13 hypothetical protein phrog_3530 unknown function unknown function -1 4187 4627
YP_009278613.1 NC_031009_p40 holin phrog_9407 holin lysis 1 22433 22723
YP_009278588.1 NC_031009_p15 hypothetical protein phrog_33239 unknown function unknown function -1 4974 5096
YP_009278587.1 NC_031009_p14 hypothetical protein phrog_1225 unknown function unknown function -1 4662 4973
YP_009278590.1 NC_031009_p17 hypothetical protein phrog_10596 unknown function unknown function -1 5321 5710
YP_009278607.1 NC_031009_p34 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16123 16410
YP_009278596.1 NC_031009_p23 hypothetical protein phrog_10074 unknown function unknown function 1 8378 8527
YP_009278597.1 NC_031009_p24 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8538 9023
YP_009278591.1 NC_031009_p18 DNA polymerase phrog_10577 DNA polymerase DNA, RNA and nucleotide metabolism -1 5710 6090
YP_009278608.1 NC_031009_p35 terminase large subunit phrog_9 terminase large subunit head and packaging 1 16422 17978
YP_009278581.1 NC_031009_p8 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2808 3347
YP_009278578.1 NC_031009_p5 hypothetical protein phrog_1317 unknown function unknown function -1 1724 2224
YP_009278594.1 NC_031009_p21 hypothetical protein phrog_10138 unknown function unknown function -1 7246 7446
YP_009278589.1 NC_031009_p16 hypothetical protein phrog_9988 unknown function unknown function -1 5083 5265
YP_009278600.1 NC_031009_p27 capsid and scaffold protein phrog_3270 head maturation protease head and packaging 1 10551 11993
YP_009278604.1 NC_031009_p31 hypothetical protein phrog_12461 unknown function unknown function 1 13721 13891
YP_009278585.1 NC_031009_p12 transcriptional regulator phrog_10808 transcriptional regulator transcription regulation -1 3988 4173
YP_009278576.1 NC_031009_p3 hypothetical protein phrog_10148 unknown function unknown function -1 1103 1405
YP_009278574.1 NC_031009_p1 hypothetical protein phrog_21914 unknown function unknown function -1 454 651
YP_009278609.1 NC_031009_p36 hypothetical protein phrog_10033 unknown function unknown function 1 17978 18277
YP_009278580.1 NC_031009_p7 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 2398 2742
YP_009278603.1 NC_031009_p30 hypothetical protein phrog_10561 unknown function unknown function 1 13425 13679
YP_009278606.1 NC_031009_p33 tail length tape-measure protein phrog_9145 tail length tape measure protein tail 1 14264 16126
YP_009278592.1 NC_031009_p19 DNA polymerase phrog_21006 DNA polymerase DNA, RNA and nucleotide metabolism -1 6087 6275
YP_009278612.1 NC_031009_p39 capsid and scaffold protein phrog_10326 virion structural protein head and packaging 1 21157 22413
YP_009278584.1 NC_031009_p11 hypothetical protein phrog_1632 unknown function unknown function -1 3771 4016
YP_009278601.1 NC_031009_p28 hypothetical protein phrog_10227 unknown function unknown function 1 12013 12717
YP_009278577.1 NC_031009_p4 hypothetical protein phrog_10525 unknown function unknown function -1 1398 1721
YP_009278582.1 NC_031009_p9 hypothetical protein phrog_10559 unknown function unknown function -1 3347 3499
YP_009278599.1 NC_031009_p26 capsid and scaffold protein phrog_10159 virion structural protein head and packaging 1 9761 10600
YP_009278605.1 NC_031009_p32 hypothetical protein phrog_10523 unknown function unknown function 1 13867 14271