| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031009 |
Definition |
Lactococcus phage D4412, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus. |
DB of origin |
REFSEQ |
Length |
22884 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
40 |
%GC |
35.43 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009278610.1 | NC_031009_p37 | hypothetical protein | phrog_10648 | unknown function | unknown function | 1 | 18274 | 20190 |
| YP_009278595.1 | NC_031009_p22 | hypothetical protein | phrog_11709 | unknown function | unknown function | -1 | 7554 | 7694 |
| YP_009278575.1 | NC_031009_p2 | hypothetical protein | phrog_10769 | unknown function | unknown function | -1 | 655 | 1029 |
| YP_009278579.1 | NC_031009_p6 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 2221 | 2385 |
| YP_009278602.1 | NC_031009_p29 | tail fibers protein | phrog_2634 | major tail protein | tail | 1 | 12735 | 13352 |
| YP_009278593.1 | NC_031009_p20 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 6345 | 7244 |
| YP_009278583.1 | NC_031009_p10 | hypothetical protein | phrog_11155 | unknown function | unknown function | -1 | 3553 | 3771 |
| YP_009278611.1 | NC_031009_p38 | capsid and scaffold protein | phrog_10067 | virion structural protein | head and packaging | 1 | 20187 | 21164 |
| YP_009278598.1 | NC_031009_p25 | N-acetylmuramoyl-L-alanine amidase | phrog_7 | endolysin | lysis | 1 | 9097 | 9750 |
| YP_009278586.1 | NC_031009_p13 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 4187 | 4627 |
| YP_009278613.1 | NC_031009_p40 | holin | phrog_9407 | holin | lysis | 1 | 22433 | 22723 |
| YP_009278588.1 | NC_031009_p15 | hypothetical protein | phrog_33239 | unknown function | unknown function | -1 | 4974 | 5096 |
| YP_009278587.1 | NC_031009_p14 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 4662 | 4973 |
| YP_009278590.1 | NC_031009_p17 | hypothetical protein | phrog_10596 | unknown function | unknown function | -1 | 5321 | 5710 |
| YP_009278607.1 | NC_031009_p34 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16123 | 16410 |
| YP_009278596.1 | NC_031009_p23 | hypothetical protein | phrog_10074 | unknown function | unknown function | 1 | 8378 | 8527 |
| YP_009278597.1 | NC_031009_p24 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8538 | 9023 |
| YP_009278591.1 | NC_031009_p18 | DNA polymerase | phrog_10577 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 5710 | 6090 |
| YP_009278608.1 | NC_031009_p35 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 16422 | 17978 |
| YP_009278581.1 | NC_031009_p8 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2808 | 3347 |
| YP_009278578.1 | NC_031009_p5 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 1724 | 2224 |
| YP_009278594.1 | NC_031009_p21 | hypothetical protein | phrog_10138 | unknown function | unknown function | -1 | 7246 | 7446 |
| YP_009278589.1 | NC_031009_p16 | hypothetical protein | phrog_9988 | unknown function | unknown function | -1 | 5083 | 5265 |
| YP_009278600.1 | NC_031009_p27 | capsid and scaffold protein | phrog_3270 | head maturation protease | head and packaging | 1 | 10551 | 11993 |
| YP_009278604.1 | NC_031009_p31 | hypothetical protein | phrog_12461 | unknown function | unknown function | 1 | 13721 | 13891 |
| YP_009278585.1 | NC_031009_p12 | transcriptional regulator | phrog_10808 | transcriptional regulator | transcription regulation | -1 | 3988 | 4173 |
| YP_009278576.1 | NC_031009_p3 | hypothetical protein | phrog_10148 | unknown function | unknown function | -1 | 1103 | 1405 |
| YP_009278574.1 | NC_031009_p1 | hypothetical protein | phrog_21914 | unknown function | unknown function | -1 | 454 | 651 |
| YP_009278609.1 | NC_031009_p36 | hypothetical protein | phrog_10033 | unknown function | unknown function | 1 | 17978 | 18277 |
| YP_009278580.1 | NC_031009_p7 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2398 | 2742 |
| YP_009278603.1 | NC_031009_p30 | hypothetical protein | phrog_10561 | unknown function | unknown function | 1 | 13425 | 13679 |
| YP_009278606.1 | NC_031009_p33 | tail length tape-measure protein | phrog_9145 | tail length tape measure protein | tail | 1 | 14264 | 16126 |
| YP_009278592.1 | NC_031009_p19 | DNA polymerase | phrog_21006 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 6087 | 6275 |
| YP_009278612.1 | NC_031009_p39 | capsid and scaffold protein | phrog_10326 | virion structural protein | head and packaging | 1 | 21157 | 22413 |
| YP_009278584.1 | NC_031009_p11 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 3771 | 4016 |
| YP_009278601.1 | NC_031009_p28 | hypothetical protein | phrog_10227 | unknown function | unknown function | 1 | 12013 | 12717 |
| YP_009278577.1 | NC_031009_p4 | hypothetical protein | phrog_10525 | unknown function | unknown function | -1 | 1398 | 1721 |
| YP_009278582.1 | NC_031009_p9 | hypothetical protein | phrog_10559 | unknown function | unknown function | -1 | 3347 | 3499 |
| YP_009278599.1 | NC_031009_p26 | capsid and scaffold protein | phrog_10159 | virion structural protein | head and packaging | 1 | 9761 | 10600 |
| YP_009278605.1 | NC_031009_p32 | hypothetical protein | phrog_10523 | unknown function | unknown function | 1 | 13867 | 14271 |