Genomic map of Lactococcus phage 28201 (NC_031013)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031013
Definition
Lactococcus phage 28201, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
34396
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
35.82
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009279520.1 NC_031013_p49 hypothetical protein phrog_1893 unknown function unknown function 1 32754 33104
YP_009279508.1 NC_031013_p37 minor capsid protein 1 phrog_793 head-tail adaptor connector 1 20582 20926
YP_009279477.1 NC_031013_p6 antirepressor phrog_373 anti-repressor transcription regulation 1 3433 4146
YP_009279510.1 NC_031013_p39 minor capsid protein 3 phrog_913 minor head protein head and packaging 1 21249 21686
YP_009279505.1 NC_031013_p34 capsid protein phrog_1623 virion structural protein head and packaging 1 18935 19852
YP_009279502.1 NC_031013_p31 portal protein phrog_12 portal protein head and packaging 1 15503 17032
YP_009279485.1 NC_031013_p14 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7816 8217
YP_009279483.1 NC_031013_p12 replicase protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 6776 7582
YP_009279521.1 NC_031013_p50 holin phrog_263 holin lysis 1 33117 33404
YP_009279473.1 NC_031013_p2 hypothetical protein phrog_19462 unknown function unknown function -1 1603 1896
YP_009279519.1 NC_031013_p48 hypothetical protein phrog_8250 unknown function unknown function 1 32505 32741
YP_009279474.1 NC_031013_p3 hypothetical protein phrog_87 metallo-protease other -1 1955 2539
YP_009279484.1 NC_031013_p13 hypothetical protein phrog_7699 unknown function unknown function 1 7566 7838
YP_009279489.1 NC_031013_p18 hypothetical protein singleton unknown function unknown function 1 9056 9343
YP_009279512.1 NC_031013_p41 hypothetical protein phrog_1061 unknown function unknown function 1 22230 22637
YP_009279513.1 NC_031013_p42 hypothetical protein phrog_706 unknown function unknown function 1 22653 23360
YP_009279522.1 NC_031013_p51 lysin phrog_998 endolysin lysis 1 33404 34183
YP_009279515.1 NC_031013_p44 HNH endodeoxyribonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24048 24608
YP_009279507.1 NC_031013_p36 head-tail connector phrog_541 head-tail adaptor connector 1 20191 20592
YP_009279493.1 NC_031013_p22 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 10534 10953
YP_009279476.1 NC_031013_p5 Cro/Cl-like repressor phrog_3 transcriptional repressor transcription regulation 1 3168 3377
YP_009279486.1 NC_031013_p15 hypothetical protein phrog_3109 unknown function unknown function 1 8220 8459
YP_009279490.1 NC_031013_p19 hypothetical protein phrog_6484 unknown function unknown function 1 9355 9636
YP_009279506.1 NC_031013_p35 intimate attachment protein phrog_215 structural protein with Ig domain head and packaging 1 19881 20117
YP_009279494.1 NC_031013_p23 hypothetical protein phrog_6209 unknown function unknown function 1 10957 11316
YP_009279492.1 NC_031013_p21 hypothetical protein phrog_10155 unknown function unknown function 1 10172 10537
YP_009279478.1 NC_031013_p7 hypothetical protein phrog_12961 excisionase integration and excision 1 4162 4344
YP_009279516.1 NC_031013_p45 tape measure protein phrog_58 tail length tape measure protein tail 1 24827 26887
YP_009279499.1 NC_031013_p28 transcription regulator phrog_2198 Alt-like transcription activator transcription regulation 1 13025 13414
YP_009279480.1 NC_031013_p9 hypothetical protein phrog_5257 unknown function unknown function 1 4476 4724
YP_009279479.1 NC_031013_p8 hypothetical protein phrog_5998 unknown function unknown function 1 4341 4463
YP_009279509.1 NC_031013_p38 minor capsid protein 2 phrog_556 minor head protein head and packaging 1 20923 21252
YP_009279497.1 NC_031013_p26 hypothetical protein phrog_2670 unknown function unknown function 1 12296 12511
YP_009279482.1 NC_031013_p11 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5627 6547
YP_009279491.1 NC_031013_p20 hypothetical protein phrog_121 unknown function unknown function 1 9633 10175
YP_009279475.1 NC_031013_p4 Cl-like repressor phrog_8 transcriptional regulator transcription regulation -1 2550 2951
YP_009279487.1 NC_031013_p16 hypothetical protein phrog_15110 unknown function unknown function 1 8569 8832
YP_009279511.1 NC_031013_p40 major tail shaft protein phrog_820 major tail protein tail 1 21697 22173
YP_009279496.1 NC_031013_p25 hypothetical protein phrog_7406 unknown function unknown function 1 12081 12299
YP_009279504.1 NC_031013_p33 DNA methyltransferase phrog_3017 head maturation protease head and packaging 1 17871 18920
YP_009279495.1 NC_031013_p24 hypothetical protein phrog_1071 DNA methyltransferase other 1 11343 12062
YP_009279481.1 NC_031013_p10 helicase phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 4827 5633
YP_009279500.1 NC_031013_p29 hypothetical protein phrog_309 terminase small subunit head and packaging 1 13585 14058
YP_009279518.1 NC_031013_p47 receptor binding protein phrog_6468 tail fiber protein; host specificity tail 1 28372 32493
YP_009279498.1 NC_031013_p27 hypothetical protein phrog_2275 unknown function unknown function 1 12640 12948
YP_009279517.1 NC_031013_p46 distal tail protein phrog_202 distal tail protein Dit tail 1 26897 28426
YP_009279488.1 NC_031013_p17 dUTPase phrog_5080 unknown function unknown function 1 8853 9059
YP_009279514.1 NC_031013_p43 tape measure protein phrog_6900 tail length tape measure protein tail 1 23350 23982
YP_009279503.1 NC_031013_p32 capsid protein phrog_2468 head morphogenesis head and packaging 1 17022 17855
YP_009279472.1 NC_031013_p1 integrase phrog_95 integrase integration and excision -1 1 1458
YP_009279501.1 NC_031013_p30 terminase large subunit phrog_38 terminase large subunit head and packaging 1 14039 15490