Genomic map of Lactococcus phage PLgT-1 (NC_031016)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031016
Definition
Lactococcus phage PLgT-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40273
Host Name
Lactococcus garvieae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
35.4
Number of singletons
12
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009279632.1 NC_031016_p18 hypothetical protein phrog_78 tail terminator connector -1 15181 15543
YP_009279652.1 NC_031016_p38 hypothetical protein phrog_834 unknown function unknown function -1 27483 27860
YP_009279635.1 NC_031016_p21 hypothetical protein phrog_132 head-tail adaptor connector -1 16409 16741
YP_009279651.1 NC_031016_p37 hypothetical protein phrog_4000 unknown function unknown function -1 27112 27480
YP_009279630.1 NC_031016_p16 hypothetical protein phrog_183 tail chaperone protein tail -1 14265 14669
YP_009279625.1 NC_031016_p11 hypothetical protein phrog_9321 unknown function unknown function -1 5977 6141
YP_009279619.1 NC_031016_p5 hypothetical protein singleton unknown function unknown function -1 2833 3138
YP_009279672.1 NC_031016_p58 hypothetical protein phrog_17280 unknown function unknown function -1 35317 35583
YP_009279638.1 NC_031016_p24 hypothetical protein phrog_918 unknown function unknown function -1 18664 18921
YP_009279659.1 NC_031016_p45 hypothetical protein phrog_16590 unknown function unknown function -1 29818 30195
YP_009279647.1 NC_031016_p33 transcriptional regulator phrog_2198 Alt-like transcription activator transcription regulation -1 24831 25253
YP_009279673.1 NC_031016_p59 hypothetical protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 35694 35987
YP_009279656.1 NC_031016_p42 hypothetical protein singleton unknown function unknown function -1 29130 29324
YP_009279622.1 NC_031016_p8 holin phrog_443 holin lysis -1 4607 4837
YP_009279650.1 NC_031016_p36 DNA methylase phrog_1071 DNA methyltransferase other -1 26433 27125
YP_009279646.1 NC_031016_p32 hypothetical protein singleton unknown function unknown function 1 24673 24828
YP_009279636.1 NC_031016_p22 major capsid protein phrog_544 major head protein head and packaging -1 16762 17880
YP_009279624.1 NC_031016_p10 hypothetical protein phrog_3285 minor tail protein tail -1 5094 6005
YP_009279631.1 NC_031016_p17 major tail protein phrog_158 major tail protein tail -1 14743 15168
YP_009279674.1 NC_031016_p60 antirepressor protein phrog_373 anti-repressor transcription regulation -1 36000 36719
YP_009279658.1 NC_031016_p44 hypothetical protein phrog_16590 unknown function unknown function -1 29481 29825
YP_009279626.1 NC_031016_p12 tail protein phrog_6616 tail protein tail -1 6125 8689
YP_009279660.1 NC_031016_p46 hypothetical protein singleton unknown function unknown function -1 30242 30439
YP_009279623.1 NC_031016_p9 holin phrog_689 holin lysis -1 4850 5071
YP_009279665.1 NC_031016_p51 replication protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism -1 31548 32357
YP_009279662.1 NC_031016_p48 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 30785 31189
YP_009279644.1 NC_031016_p30 terminase large subunit phrog_2 terminase large subunit head and packaging -1 22571 23806
YP_009279643.1 NC_031016_p29 portal protein phrog_64 portal protein head and packaging -1 21054 22562
YP_009279653.1 NC_031016_p39 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 27864 28091
YP_009279639.1 NC_031016_p25 hypothetical protein phrog_24835 unknown function unknown function -1 18985 19512
YP_009279654.1 NC_031016_p40 hypothetical protein phrog_12206 unknown function unknown function 1 28217 28567
YP_009279663.1 NC_031016_p49 hypothetical protein phrog_4314 unknown function unknown function -1 31186 31335
YP_009279676.1 NC_031016_p62 hypothetical protein singleton unknown function unknown function -1 36989 37195
YP_009279677.1 NC_031016_p63 repressor protein phrog_8 transcriptional regulator transcription regulation 1 37470 37814
YP_009279668.1 NC_031016_p54 DNA-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 33293 34009
YP_009279670.1 NC_031016_p56 hypothetical protein singleton unknown function unknown function -1 34584 34739
YP_009279620.1 NC_031016_p6 hypothetical protein singleton unknown function unknown function -1 3156 3410
YP_009279666.1 NC_031016_p52 endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32357 32695
YP_009279642.1 NC_031016_p28 hypothetical protein phrog_16838 unknown function unknown function -1 20936 21097
YP_009279616.1 NC_031016_p2 hypothetical protein singleton unknown function unknown function -1 1400 1591
YP_009279657.1 NC_031016_p43 hypothetical protein phrog_23093 unknown function unknown function -1 29302 29481
YP_009279617.1 NC_031016_p3 hypothetical protein singleton unknown function unknown function 1 1844 2026
YP_009279661.1 NC_031016_p47 hypothetical protein phrog_3109 unknown function unknown function -1 30559 30798
YP_009279664.1 NC_031016_p50 hypothetical protein phrog_7699 unknown function unknown function -1 31319 31561
YP_009279667.1 NC_031016_p53 single stranded DNA binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 32787 33293
YP_009279629.1 NC_031016_p15 hypothetical protein phrog_2066 unknown function unknown function -1 13867 14241
YP_009279627.1 NC_031016_p13 hypothetical protein phrog_1194 unknown function unknown function -1 8690 9055
YP_009279621.1 NC_031016_p7 hypothetical protein phrog_7887 endolysin lysis -1 3856 4605
YP_009279669.1 NC_031016_p55 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 34012 34500
YP_009279675.1 NC_031016_p61 hypothetical protein singleton unknown function unknown function -1 36738 36881
YP_009279648.1 NC_031016_p34 hypothetical protein phrog_2670 unknown function unknown function -1 25876 26097
YP_009279618.1 NC_031016_p4 hypothetical protein phrog_31683 unknown function unknown function -1 2141 2263
YP_009279628.1 NC_031016_p14 tail length tape-measure protein phrog_1535 tail length tape measure protein tail -1 9069 13850
YP_009279649.1 NC_031016_p35 hypothetical protein phrog_16072 unknown function unknown function -1 26094 26387
YP_009279641.1 NC_031016_p27 ribosomal protein phrog_4478 peptidase other -1 20648 20935
YP_009279655.1 NC_031016_p41 hypothetical protein phrog_121 unknown function unknown function -1 28601 29137
YP_009279679.1 NC_031016_p65 immunity region phrog_11491 unknown function unknown function 1 38317 38895
YP_009279637.1 NC_031016_p23 scaffold protein phrog_172 head scaffolding protein head and packaging -1 17893 18567
YP_009279634.1 NC_031016_p20 hypothetical protein phrog_2168 unknown function unknown function -1 16075 16419
YP_009279640.1 NC_031016_p26 head protein phrog_115 minor head protein head and packaging -1 19545 20642
YP_009279680.1 NC_031016_p66 integrase phrog_1 integrase integration and excision 1 39020 40102
YP_009279678.1 NC_031016_p64 hypothetical protein singleton unknown function unknown function 1 37826 38218
YP_009279633.1 NC_031016_p19 neck protein phrog_5 tail completion or Neck1 protein connector -1 15543 16091
YP_009279645.1 NC_031016_p31 terminase small subunit phrog_51 terminase small subunit head and packaging -1 23796 24308
YP_009279615.1 NC_031016_p1 hypothetical protein singleton unknown function unknown function -1 351 563
YP_009279671.1 NC_031016_p57 hypothetical protein phrog_17213 unknown function unknown function 1 34842 35339