| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031016 |
Definition |
Lactococcus phage PLgT-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40273 |
Host Name |
Lactococcus garvieae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
35.4 |
Number of singletons |
12 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009279632.1 | NC_031016_p18 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 15181 | 15543 |
| YP_009279652.1 | NC_031016_p38 | hypothetical protein | phrog_834 | unknown function | unknown function | -1 | 27483 | 27860 |
| YP_009279635.1 | NC_031016_p21 | hypothetical protein | phrog_132 | head-tail adaptor | connector | -1 | 16409 | 16741 |
| YP_009279651.1 | NC_031016_p37 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 27112 | 27480 |
| YP_009279630.1 | NC_031016_p16 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 14265 | 14669 |
| YP_009279625.1 | NC_031016_p11 | hypothetical protein | phrog_9321 | unknown function | unknown function | -1 | 5977 | 6141 |
| YP_009279619.1 | NC_031016_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2833 | 3138 |
| YP_009279672.1 | NC_031016_p58 | hypothetical protein | phrog_17280 | unknown function | unknown function | -1 | 35317 | 35583 |
| YP_009279638.1 | NC_031016_p24 | hypothetical protein | phrog_918 | unknown function | unknown function | -1 | 18664 | 18921 |
| YP_009279659.1 | NC_031016_p45 | hypothetical protein | phrog_16590 | unknown function | unknown function | -1 | 29818 | 30195 |
| YP_009279647.1 | NC_031016_p33 | transcriptional regulator | phrog_2198 | Alt-like transcription activator | transcription regulation | -1 | 24831 | 25253 |
| YP_009279673.1 | NC_031016_p59 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35694 | 35987 |
| YP_009279656.1 | NC_031016_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29130 | 29324 |
| YP_009279622.1 | NC_031016_p8 | holin | phrog_443 | holin | lysis | -1 | 4607 | 4837 |
| YP_009279650.1 | NC_031016_p36 | DNA methylase | phrog_1071 | DNA methyltransferase | other | -1 | 26433 | 27125 |
| YP_009279646.1 | NC_031016_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24673 | 24828 |
| YP_009279636.1 | NC_031016_p22 | major capsid protein | phrog_544 | major head protein | head and packaging | -1 | 16762 | 17880 |
| YP_009279624.1 | NC_031016_p10 | hypothetical protein | phrog_3285 | minor tail protein | tail | -1 | 5094 | 6005 |
| YP_009279631.1 | NC_031016_p17 | major tail protein | phrog_158 | major tail protein | tail | -1 | 14743 | 15168 |
| YP_009279674.1 | NC_031016_p60 | antirepressor protein | phrog_373 | anti-repressor | transcription regulation | -1 | 36000 | 36719 |
| YP_009279658.1 | NC_031016_p44 | hypothetical protein | phrog_16590 | unknown function | unknown function | -1 | 29481 | 29825 |
| YP_009279626.1 | NC_031016_p12 | tail protein | phrog_6616 | tail protein | tail | -1 | 6125 | 8689 |
| YP_009279660.1 | NC_031016_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30242 | 30439 |
| YP_009279623.1 | NC_031016_p9 | holin | phrog_689 | holin | lysis | -1 | 4850 | 5071 |
| YP_009279665.1 | NC_031016_p51 | replication protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | -1 | 31548 | 32357 |
| YP_009279662.1 | NC_031016_p48 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 30785 | 31189 |
| YP_009279644.1 | NC_031016_p30 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 22571 | 23806 |
| YP_009279643.1 | NC_031016_p29 | portal protein | phrog_64 | portal protein | head and packaging | -1 | 21054 | 22562 |
| YP_009279653.1 | NC_031016_p39 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 27864 | 28091 |
| YP_009279639.1 | NC_031016_p25 | hypothetical protein | phrog_24835 | unknown function | unknown function | -1 | 18985 | 19512 |
| YP_009279654.1 | NC_031016_p40 | hypothetical protein | phrog_12206 | unknown function | unknown function | 1 | 28217 | 28567 |
| YP_009279663.1 | NC_031016_p49 | hypothetical protein | phrog_4314 | unknown function | unknown function | -1 | 31186 | 31335 |
| YP_009279676.1 | NC_031016_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36989 | 37195 |
| YP_009279677.1 | NC_031016_p63 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 37470 | 37814 |
| YP_009279668.1 | NC_031016_p54 | DNA-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33293 | 34009 |
| YP_009279670.1 | NC_031016_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34584 | 34739 |
| YP_009279620.1 | NC_031016_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3156 | 3410 |
| YP_009279666.1 | NC_031016_p52 | endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32357 | 32695 |
| YP_009279642.1 | NC_031016_p28 | hypothetical protein | phrog_16838 | unknown function | unknown function | -1 | 20936 | 21097 |
| YP_009279616.1 | NC_031016_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1400 | 1591 |
| YP_009279657.1 | NC_031016_p43 | hypothetical protein | phrog_23093 | unknown function | unknown function | -1 | 29302 | 29481 |
| YP_009279617.1 | NC_031016_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1844 | 2026 |
| YP_009279661.1 | NC_031016_p47 | hypothetical protein | phrog_3109 | unknown function | unknown function | -1 | 30559 | 30798 |
| YP_009279664.1 | NC_031016_p50 | hypothetical protein | phrog_7699 | unknown function | unknown function | -1 | 31319 | 31561 |
| YP_009279667.1 | NC_031016_p53 | single stranded DNA binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32787 | 33293 |
| YP_009279629.1 | NC_031016_p15 | hypothetical protein | phrog_2066 | unknown function | unknown function | -1 | 13867 | 14241 |
| YP_009279627.1 | NC_031016_p13 | hypothetical protein | phrog_1194 | unknown function | unknown function | -1 | 8690 | 9055 |
| YP_009279621.1 | NC_031016_p7 | hypothetical protein | phrog_7887 | endolysin | lysis | -1 | 3856 | 4605 |
| YP_009279669.1 | NC_031016_p55 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 34012 | 34500 |
| YP_009279675.1 | NC_031016_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36738 | 36881 |
| YP_009279648.1 | NC_031016_p34 | hypothetical protein | phrog_2670 | unknown function | unknown function | -1 | 25876 | 26097 |
| YP_009279618.1 | NC_031016_p4 | hypothetical protein | phrog_31683 | unknown function | unknown function | -1 | 2141 | 2263 |
| YP_009279628.1 | NC_031016_p14 | tail length tape-measure protein | phrog_1535 | tail length tape measure protein | tail | -1 | 9069 | 13850 |
| YP_009279649.1 | NC_031016_p35 | hypothetical protein | phrog_16072 | unknown function | unknown function | -1 | 26094 | 26387 |
| YP_009279641.1 | NC_031016_p27 | ribosomal protein | phrog_4478 | peptidase | other | -1 | 20648 | 20935 |
| YP_009279655.1 | NC_031016_p41 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 28601 | 29137 |
| YP_009279679.1 | NC_031016_p65 | immunity region | phrog_11491 | unknown function | unknown function | 1 | 38317 | 38895 |
| YP_009279637.1 | NC_031016_p23 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | -1 | 17893 | 18567 |
| YP_009279634.1 | NC_031016_p20 | hypothetical protein | phrog_2168 | unknown function | unknown function | -1 | 16075 | 16419 |
| YP_009279640.1 | NC_031016_p26 | head protein | phrog_115 | minor head protein | head and packaging | -1 | 19545 | 20642 |
| YP_009279680.1 | NC_031016_p66 | integrase | phrog_1 | integrase | integration and excision | 1 | 39020 | 40102 |
| YP_009279678.1 | NC_031016_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37826 | 38218 |
| YP_009279633.1 | NC_031016_p19 | neck protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 15543 | 16091 |
| YP_009279645.1 | NC_031016_p31 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 23796 | 24308 |
| YP_009279615.1 | NC_031016_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 351 | 563 |
| YP_009279671.1 | NC_031016_p57 | hypothetical protein | phrog_17213 | unknown function | unknown function | 1 | 34842 | 35339 |