| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031018 |
Definition |
Citrobacter phage SH4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus SH4. |
DB of origin |
REFSEQ |
Length |
39274 |
Host Name |
Citrobacter freundii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
52.58 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009279754.1 | NC_031018_p26 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15574 | 15858 |
| YP_009279770.1 | NC_031018_p42 | tail fibers protein | phrog_8460 | tail fiber protein | tail | 1 | 32962 | 35460 |
| YP_009279744.1 | NC_031018_p16 | helix-destabilizing protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8935 | 9633 |
| YP_009279762.1 | NC_031018_p34 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20250 | 21131 |
| YP_009279743.1 | NC_031018_p15 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8672 | 8887 |
| YP_009279752.1 | NC_031018_p24 | hypothetical protein | phrog_18700 | unknown function | unknown function | 1 | 12934 | 13332 |
| YP_009279753.1 | NC_031018_p25 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13403 | 15574 |
| YP_009279740.1 | NC_031018_p12 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6827 | 7897 |
| YP_009279759.1 | NC_031018_p31 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17686 | 17910 |
| YP_009279742.1 | NC_031018_p14 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8273 | 8593 |
| YP_009279745.1 | NC_031018_p17 | endonuclease | phrog_27028 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9870 | 10088 |
| YP_009279730.1 | NC_031018_p2 | hypothetical protein | phrog_11084 | unknown function | unknown function | 1 | 1134 | 1658 |
| YP_009279748.1 | NC_031018_p20 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 10772 | 10984 |
| YP_009279760.1 | NC_031018_p32 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17914 | 18318 |
| YP_009279773.1 | NC_031018_p45 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 36066 | 36515 |
| YP_009279758.1 | NC_031018_p30 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17403 | 17675 |
| YP_009279774.1 | NC_031018_p46 | hypothetical protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36169 | 36441 |
| YP_009279749.1 | NC_031018_p21 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11053 | 12756 |
| YP_009279756.1 | NC_031018_p28 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 16061 | 16336 |
| YP_009279737.1 | NC_031018_p9 | hypothetical protein | phrog_8103 | unknown function | unknown function | 1 | 5771 | 6250 |
| YP_009279732.1 | NC_031018_p4 | hypothetical protein | phrog_7319 | unknown function | unknown function | 1 | 2006 | 2173 |
| YP_009279777.1 | NC_031018_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38566 | 38724 |
| YP_009279734.1 | NC_031018_p6 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 2374 | 2700 |
| YP_009279767.1 | NC_031018_p39 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26111 | 26698 |
| YP_009279735.1 | NC_031018_p7 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2798 | 5479 |
| YP_009279739.1 | NC_031018_p11 | hypothetical protein | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6522 | 6809 |
| YP_009279764.1 | NC_031018_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22633 | 23199 |
| YP_009279763.1 | NC_031018_p35 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21263 | 22312 |
| YP_009279761.1 | NC_031018_p33 | head-to-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 18577 | 20145 |
| YP_009279731.1 | NC_031018_p3 | hypothetical protein | phrog_5058 | unknown function | unknown function | 1 | 1652 | 1807 |
| YP_009279733.1 | NC_031018_p5 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2177 | 2374 |
| YP_009279769.1 | NC_031018_p41 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 28998 | 32894 |
| YP_009279741.1 | NC_031018_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8019 | 8273 |
| YP_009279771.1 | NC_031018_p43 | lysis protein | phrog_920 | holin | lysis | 1 | 35507 | 35701 |
| YP_009279751.1 | NC_031018_p23 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 12485 | 12799 |
| YP_009279765.1 | NC_031018_p37 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23211 | 25580 |
| YP_009279768.1 | NC_031018_p40 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 26710 | 28992 |
| YP_009279757.1 | NC_031018_p29 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16329 | 17195 |
| YP_009279755.1 | NC_031018_p27 | fusion protein | phrog_1334 | unknown function | unknown function | 1 | 15855 | 16064 |
| YP_009279775.1 | NC_031018_p47 | maturation protein | phrog_38 | terminase large subunit | head and packaging | 1 | 36545 | 38275 |
| YP_009279729.1 | NC_031018_p1 | hypothetical protein | phrog_336 | unknown function | unknown function | 1 | 934 | 1137 |
| YP_009279776.1 | NC_031018_p48 | hypothetical protein | phrog_31393 | unknown function | unknown function | 1 | 37194 | 37319 |
| YP_009279750.1 | NC_031018_p22 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11206 | 12756 |
| YP_009279747.1 | NC_031018_p19 | n-acetylmuramoyl-l-alanine amidase | phrog_822 | amidase | lysis | 1 | 10299 | 10757 |
| YP_009279738.1 | NC_031018_p10 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 6339 | 6518 |
| YP_009279736.1 | NC_031018_p8 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 5492 | 5692 |
| YP_009279746.1 | NC_031018_p18 | hypothetical protein | phrog_15211 | unknown function | unknown function | 1 | 10085 | 10309 |
| YP_009279766.1 | NC_031018_p38 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25656 | 26126 |
| YP_009279772.1 | NC_031018_p44 | DNA packaging protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 35698 | 35961 |