Genomic map of Citrobacter phage SH4 (NC_031018)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031018
Definition
Citrobacter phage SH4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus SH4.
DB of origin
REFSEQ
Length
39274
Host Name
Citrobacter freundii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
52.58
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009279754.1 NC_031018_p26 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 15574 15858
YP_009279770.1 NC_031018_p42 tail fibers protein phrog_8460 tail fiber protein tail 1 32962 35460
YP_009279744.1 NC_031018_p16 helix-destabilizing protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8935 9633
YP_009279762.1 NC_031018_p34 capsid assembly protein phrog_1052 head assembly head and packaging 1 20250 21131
YP_009279743.1 NC_031018_p15 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 8672 8887
YP_009279752.1 NC_031018_p24 hypothetical protein phrog_18700 unknown function unknown function 1 12934 13332
YP_009279753.1 NC_031018_p25 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13403 15574
YP_009279740.1 NC_031018_p12 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6827 7897
YP_009279759.1 NC_031018_p31 hypothetical protein phrog_1391 unknown function unknown function 1 17686 17910
YP_009279742.1 NC_031018_p14 hypothetical protein phrog_2585 nucleotide kinase other 1 8273 8593
YP_009279745.1 NC_031018_p17 endonuclease phrog_27028 endonuclease DNA, RNA and nucleotide metabolism 1 9870 10088
YP_009279730.1 NC_031018_p2 hypothetical protein phrog_11084 unknown function unknown function 1 1134 1658
YP_009279748.1 NC_031018_p20 hypothetical protein phrog_1950 unknown function unknown function 1 10772 10984
YP_009279760.1 NC_031018_p32 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17914 18318
YP_009279773.1 NC_031018_p45 endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 36066 36515
YP_009279758.1 NC_031018_p30 hypothetical protein phrog_1447 unknown function unknown function 1 17403 17675
YP_009279774.1 NC_031018_p46 hypothetical protein phrog_4306 Rz-like spanin lysis 1 36169 36441
YP_009279749.1 NC_031018_p21 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11053 12756
YP_009279756.1 NC_031018_p28 hypothetical protein phrog_2251 unknown function unknown function 1 16061 16336
YP_009279737.1 NC_031018_p9 hypothetical protein phrog_8103 unknown function unknown function 1 5771 6250
YP_009279732.1 NC_031018_p4 hypothetical protein phrog_7319 unknown function unknown function 1 2006 2173
YP_009279777.1 NC_031018_p49 hypothetical protein phrog_2193 unknown function unknown function 1 38566 38724
YP_009279734.1 NC_031018_p6 hypothetical protein phrog_7066 unknown function unknown function 1 2374 2700
YP_009279767.1 NC_031018_p39 internal virion protein B phrog_805 internal virion protein head and packaging 1 26111 26698
YP_009279735.1 NC_031018_p7 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2798 5479
YP_009279739.1 NC_031018_p11 hypothetical protein phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6522 6809
YP_009279764.1 NC_031018_p36 tail tubular protein A phrog_446 tail protein tail 1 22633 23199
YP_009279763.1 NC_031018_p35 major capsid protein phrog_267 major head protein head and packaging 1 21263 22312
YP_009279761.1 NC_031018_p33 head-to-tail connector protein phrog_449 head-tail adaptor connector 1 18577 20145
YP_009279731.1 NC_031018_p3 hypothetical protein phrog_5058 unknown function unknown function 1 1652 1807
YP_009279733.1 NC_031018_p5 hypothetical protein phrog_2385 unknown function unknown function 1 2177 2374
YP_009279769.1 NC_031018_p41 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 28998 32894
YP_009279741.1 NC_031018_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8019 8273
YP_009279771.1 NC_031018_p43 lysis protein phrog_920 holin lysis 1 35507 35701
YP_009279751.1 NC_031018_p23 hypothetical protein phrog_5140 unknown function unknown function 1 12485 12799
YP_009279765.1 NC_031018_p37 tail tubular protein B phrog_457 tail protein tail 1 23211 25580
YP_009279768.1 NC_031018_p40 internal virion protein C phrog_1339 internal virion protein head and packaging 1 26710 28992
YP_009279757.1 NC_031018_p29 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16329 17195
YP_009279755.1 NC_031018_p27 fusion protein phrog_1334 unknown function unknown function 1 15855 16064
YP_009279775.1 NC_031018_p47 maturation protein phrog_38 terminase large subunit head and packaging 1 36545 38275
YP_009279729.1 NC_031018_p1 hypothetical protein phrog_336 unknown function unknown function 1 934 1137
YP_009279776.1 NC_031018_p48 hypothetical protein phrog_31393 unknown function unknown function 1 37194 37319
YP_009279750.1 NC_031018_p22 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11206 12756
YP_009279747.1 NC_031018_p19 n-acetylmuramoyl-l-alanine amidase phrog_822 amidase lysis 1 10299 10757
YP_009279738.1 NC_031018_p10 hypothetical protein phrog_4383 unknown function unknown function 1 6339 6518
YP_009279736.1 NC_031018_p8 hypothetical protein phrog_8082 unknown function unknown function 1 5492 5692
YP_009279746.1 NC_031018_p18 hypothetical protein phrog_15211 unknown function unknown function 1 10085 10309
YP_009279766.1 NC_031018_p38 internal virion protein A phrog_308 internal virion protein head and packaging 1 25656 26126
YP_009279772.1 NC_031018_p44 DNA packaging protein phrog_1351 terminase small subunit head and packaging 1 35698 35961