| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031021 |
Definition |
Salmonella phage MA12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
41224 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
49.87 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009280160.1 | NC_031021_p32 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 20774 | 20965 |
| YP_009280175.1 | NC_031021_p47 | DNA-binding protein Roi | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 34127 | 34798 |
| YP_009280159.1 | NC_031021_p31 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20455 | 20742 |
| YP_009280143.1 | NC_031021_p15 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 7856 | 8041 |
| YP_009280161.1 | NC_031021_p33 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 21046 | 22386 |
| YP_009280164.1 | NC_031021_p36 | tail fibers protein | phrog_1819 | tail spike protein | tail | -1 | 23126 | 25180 |
| YP_009280184.1 | NC_031021_p56 | capsid and scaffold protein | phrog_4366 | head fiber protein | head and packaging | -1 | 38874 | 39158 |
| YP_009280170.1 | NC_031021_p42 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 31462 | 31821 |
| YP_009280136.1 | NC_031021_p8 | hypothetical protein | phrog_10956 | unknown function | unknown function | -1 | 6471 | 6653 |
| YP_009280138.1 | NC_031021_p10 | hypothetical protein | phrog_268 | unknown function | unknown function | -1 | 6952 | 7176 |
| YP_009280135.1 | NC_031021_p7 | hypothetical protein | phrog_18319 | unknown function | unknown function | -1 | 6279 | 6410 |
| YP_009280139.1 | NC_031021_p11 | hypothetical protein | phrog_10200 | unknown function | unknown function | -1 | 7173 | 7322 |
| YP_009280173.1 | NC_031021_p45 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 32656 | 33786 |
| YP_009280182.1 | NC_031021_p54 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 38287 | 38475 |
| YP_009280185.1 | NC_031021_p57 | capsid protein | phrog_247 | major head protein | head and packaging | -1 | 39219 | 40268 |
| YP_009280176.1 | NC_031021_p48 | hypothetical protein | phrog_290 | minor tail protein | tail | -1 | 34827 | 35996 |
| YP_009280154.1 | NC_031021_p26 | 13.88 kDa late protein | phrog_3127 | unknown function | unknown function | 1 | 14334 | 14861 |
| YP_009280148.1 | NC_031021_p20 | hypothetical protein | phrog_3766 | unknown function | unknown function | -1 | 9714 | 9917 |
| YP_009280134.1 | NC_031021_p6 | hypothetical protein | phrog_3064 | terminase | head and packaging | -1 | 5744 | 6250 |
| YP_009280147.1 | NC_031021_p19 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 9346 | 9711 |
| YP_009280131.1 | NC_031021_p3 | hypothetical protein | phrog_6095 | amidase | lysis | 1 | 2317 | 2967 |
| YP_009280155.1 | NC_031021_p27 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14904 | 16331 |
| YP_009280144.1 | NC_031021_p16 | lysin | phrog_7 | endolysin | lysis | -1 | 8227 | 8715 |
| YP_009280171.1 | NC_031021_p43 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 31827 | 32243 |
| YP_009280152.1 | NC_031021_p24 | DNA primase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 11781 | 13967 |
| YP_009280141.1 | NC_031021_p13 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 7549 | 7704 |
| YP_009280166.1 | NC_031021_p38 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 27760 | 28125 |
| YP_009280180.1 | NC_031021_p52 | hypothetical protein | phrog_3614 | unknown function | unknown function | -1 | 37166 | 37771 |
| YP_009280149.1 | NC_031021_p21 | hypothetical protein | phrog_6094 | unknown function | unknown function | -1 | 9914 | 10300 |
| YP_009280181.1 | NC_031021_p53 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 37774 | 38283 |
| YP_009280157.1 | NC_031021_p29 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 16586 | 17212 |
| YP_009280140.1 | NC_031021_p12 | hypothetical protein | phrog_1402 | unknown function | unknown function | -1 | 7319 | 7552 |
| YP_009280130.1 | NC_031021_p2 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | -1 | 1108 | 2151 |
| YP_009280163.1 | NC_031021_p35 | hypothetical protein | phrog_5915 | unknown function | unknown function | 1 | 22874 | 23041 |
| YP_009280153.1 | NC_031021_p25 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 13982 | 14200 |
| YP_009280162.1 | NC_031021_p34 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22383 | 22874 |
| YP_009280169.1 | NC_031021_p41 | hypothetical protein | phrog_1538 | tail length tape measure protein | tail | -1 | 29136 | 31469 |
| YP_009280186.1 | NC_031021_p58 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 40272 | 40973 |
| YP_009280132.1 | NC_031021_p4 | 62kDa structural protein | phrog_145 | portal protein | head and packaging | -1 | 2998 | 4470 |
| YP_009280150.1 | NC_031021_p22 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 11324 | 11494 |
| YP_009280172.1 | NC_031021_p44 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 32414 | 32593 |
| YP_009280167.1 | NC_031021_p39 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 28122 | 28637 |
| YP_009280174.1 | NC_031021_p46 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 33783 | 34013 |
| YP_009280151.1 | NC_031021_p23 | hypothetical protein | phrog_5169 | unknown function | unknown function | 1 | 11491 | 11724 |
| YP_009280178.1 | NC_031021_p50 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 36415 | 36810 |
| YP_009280142.1 | NC_031021_p14 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 7701 | 7859 |
| YP_009280168.1 | NC_031021_p40 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 28634 | 29077 |
| YP_009280156.1 | NC_031021_p28 | hypothetical protein | phrog_13603 | unknown function | unknown function | 1 | 16328 | 16504 |
| YP_009280158.1 | NC_031021_p30 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17270 | 20368 |
| YP_009280129.1 | NC_031021_p1 | neck whiskers protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 647 | 1105 |
| YP_009280177.1 | NC_031021_p49 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 35996 | 36415 |
| YP_009280145.1 | NC_031021_p17 | hypothetical protein | phrog_2508 | holin | lysis | -1 | 8696 | 8983 |
| YP_009280146.1 | NC_031021_p18 | hypothetical protein | phrog_2359 | holin | lysis | -1 | 8985 | 9266 |
| YP_009280165.1 | NC_031021_p37 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 25193 | 27769 |
| YP_009280183.1 | NC_031021_p55 | neck whiskers protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 38512 | 38862 |
| YP_009280137.1 | NC_031021_p9 | hypothetical protein | phrog_2531 | unknown function | unknown function | -1 | 6650 | 6952 |
| YP_009280179.1 | NC_031021_p51 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 36807 | 37166 |
| YP_009280133.1 | NC_031021_p5 | terminase | phrog_2 | terminase large subunit | head and packaging | -1 | 4483 | 5754 |
| YP_009280187.1 | NC_031021_p59 | hypothetical protein | phrog_5672 | Rz-like spanin | lysis | -1 | 41058 | 41201 |