| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031022 |
Definition |
Shigella phage SHSML-45, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; Shigella virus SHSML45. |
DB of origin |
REFSEQ |
Length |
108050 |
Host Name |
Shigella sonnei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
139 |
%GC |
38.73 |
Number of singletons |
4 |
Number of paralogs |
16 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009280286.1 | NC_031022_p99 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 68225 | 69064 |
| YP_009280240.1 | NC_031022_p53 | hypothetical protein | phrog_4979 | unknown function | unknown function | -1 | 42637 | 43068 |
| YP_009280219.1 | NC_031022_p32 | hypothetical protein | phrog_4718 | unknown function | unknown function | -1 | 30516 | 30719 |
| YP_009280261.1 | NC_031022_p74 | hypothetical protein | phrog_2855 | unknown function | unknown function | -1 | 54265 | 54546 |
| YP_009280282.1 | NC_031022_p95 | hypothetical protein | phrog_4586 | unknown function | unknown function | -1 | 66382 | 66618 |
| YP_009280285.1 | NC_031022_p98 | ribonuclease HI | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 67615 | 68091 |
| YP_009280220.1 | NC_031022_p33 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30897 | 31238 |
| YP_009280324.1 | NC_031022_p137 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 104754 | 105200 |
| YP_009280289.1 | NC_031022_p102 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 70739 | 71263 |
| YP_009280275.1 | NC_031022_p88 | recombination related exonuclease | phrog_1460 | tRNA amidotransferase | DNA, RNA and nucleotide metabolism | -1 | 62309 | 62743 |
| YP_009280284.1 | NC_031022_p97 | hypothetical protein | phrog_4593 | unknown function | unknown function | -1 | 67261 | 67500 |
| YP_009280199.1 | NC_031022_p12 | hypothetical protein | phrog_442 | head-tail adaptor | connector | -1 | 14557 | 15069 |
| YP_009280319.1 | NC_031022_p132 | recombinase | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 100108 | 101085 |
| YP_009280223.1 | NC_031022_p36 | hypothetical protein | phrog_5607 | unknown function | unknown function | 1 | 33886 | 34035 |
| YP_009280309.1 | NC_031022_p122 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 88965 | 89732 |
| YP_009280320.1 | NC_031022_p133 | recombination-related endonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 101108 | 102904 |
| YP_009280276.1 | NC_031022_p89 | hypothetical protein | phrog_5077 | unknown function | unknown function | -1 | 62743 | 62913 |
| YP_009280231.1 | NC_031022_p44 | hypothetical protein | phrog_4605 | unknown function | unknown function | -1 | 39499 | 39987 |
| YP_009280321.1 | NC_031022_p134 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 103098 | 103400 |
| YP_009280288.1 | NC_031022_p101 | ribonucleotide reductase of class Ia (aerobic) beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 69594 | 70739 |
| YP_009280214.1 | NC_031022_p27 | hypothetical protein | phrog_415 | polynucleotide kinase | other | -1 | 25658 | 26392 |
| YP_009280270.1 | NC_031022_p83 | hypothetical protein | phrog_5153 | unknown function | unknown function | -1 | 58985 | 59191 |
| YP_009280190.1 | NC_031022_p3 | tail length tape-measure protein | phrog_31 | central tail fiber J | tail | -1 | 2813 | 5662 |
| YP_009280294.1 | NC_031022_p107 | ribonucleotide reductase of class III (anaerobic) large subunit | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 76853 | 78679 |
| YP_009280312.1 | NC_031022_p125 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 91829 | 92362 |
| YP_009280242.1 | NC_031022_p55 | serine/threonine protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 43758 | 44621 |
| YP_009280287.1 | NC_031022_p100 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 69064 | 69597 |
| YP_009280191.1 | NC_031022_p4 | hypothetical protein | phrog_1302 | distal tail protein | tail | -1 | 5659 | 6273 |
| YP_009280216.1 | NC_031022_p29 | A1 protein | phrog_1745 | DNA transfer protein | other | -1 | 27467 | 29134 |
| YP_009280257.1 | NC_031022_p70 | hypothetical protein | phrog_5265 | unknown function | unknown function | -1 | 53033 | 53317 |
| YP_009280218.1 | NC_031022_p31 | hypothetical protein | phrog_3747 | unknown function | unknown function | -1 | 30036 | 30287 |
| YP_009280326.1 | NC_031022_p139 | tail fibers protein | phrog_6578 | tail fiber protein | tail | -1 | 105688 | 107385 |
| YP_009280237.1 | NC_031022_p50 | hypothetical protein | phrog_4804 | unknown function | unknown function | -1 | 41599 | 41844 |
| YP_009280202.1 | NC_031022_p15 | tail fibers protein | phrog_2973 | Hoc-like head decoration | head and packaging | -1 | 17159 | 17653 |
| YP_009280189.1 | NC_031022_p2 | tail fibers protein | phrog_3890 | straight fibre tail protein | tail | -1 | 756 | 2813 |
| YP_009280246.1 | NC_031022_p59 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45683 | 46222 |
| YP_009280311.1 | NC_031022_p124 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 90366 | 91832 |
| YP_009280250.1 | NC_031022_p63 | ATP-dependent Clp protease proteolytic subunit | phrog_1827 | ATP-dependent protease | other | -1 | 48413 | 49012 |
| YP_009280255.1 | NC_031022_p68 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 51903 | 52418 |
| YP_009280206.1 | NC_031022_p19 | hypothetical protein | phrog_3802 | terminase small subunit | head and packaging | -1 | 21456 | 21938 |
| YP_009280236.1 | NC_031022_p49 | hypothetical protein | phrog_4731 | unknown function | unknown function | -1 | 41283 | 41609 |
| YP_009280302.1 | NC_031022_p115 | hypothetical protein | phrog_5291 | unknown function | unknown function | 1 | 84486 | 84719 |
| YP_009280293.1 | NC_031022_p106 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76003 | 76866 |
| YP_009280322.1 | NC_031022_p135 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 103400 | 103882 |
| YP_009280254.1 | NC_031022_p67 | hypothetical protein | phrog_4243 | unknown function | unknown function | -1 | 51219 | 51899 |
| YP_009280201.1 | NC_031022_p14 | capsid and scaffold protein | phrog_80 | head maturation protease | head and packaging | -1 | 16523 | 17155 |
| YP_009280265.1 | NC_031022_p78 | hypothetical protein | phrog_4760 | unknown function | unknown function | -1 | 56135 | 56425 |
| YP_009280229.1 | NC_031022_p42 | hypothetical protein | phrog_5799 | unknown function | unknown function | -1 | 38810 | 38995 |
| YP_009280301.1 | NC_031022_p114 | DNA primase C | phrog_3712 | replication origin binding | DNA, RNA and nucleotide metabolism | 1 | 81713 | 84502 |
| YP_009280256.1 | NC_031022_p69 | hypothetical protein | phrog_5468 | unknown function | unknown function | -1 | 52569 | 52916 |
| YP_009280207.1 | NC_031022_p20 | receptor-binding protein | phrog_4815 | receptor binding tail protein | tail | -1 | 21949 | 23706 |
| YP_009280277.1 | NC_031022_p90 | hypothetical protein | phrog_938 | endolysin | lysis | -1 | 62982 | 63431 |
| YP_009280258.1 | NC_031022_p71 | hypothetical protein | phrog_5792 | unknown function | unknown function | -1 | 53314 | 53607 |
| YP_009280308.1 | NC_031022_p121 | DNA ligase | phrog_3498 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 88193 | 88972 |
| YP_009280210.1 | NC_031022_p23 | hypothetical protein | phrog_6369 | unknown function | unknown function | 1 | 24355 | 24471 |
| YP_009280253.1 | NC_031022_p66 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | -1 | 50797 | 51222 |
| YP_009280268.1 | NC_031022_p81 | hypothetical protein | phrog_7042 | unknown function | unknown function | -1 | 57876 | 58067 |
| YP_009280262.1 | NC_031022_p75 | hypothetical protein | phrog_5021 | unknown function | unknown function | -1 | 54624 | 54971 |
| YP_009280315.1 | NC_031022_p128 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 96366 | 97712 |
| YP_009280209.1 | NC_031022_p22 | hypothetical protein | phrog_8596 | unknown function | unknown function | 1 | 24236 | 24364 |
| YP_009280222.1 | NC_031022_p35 | hypothetical protein | phrog_6741 | unknown function | unknown function | 1 | 33284 | 33778 |
| YP_009280194.1 | NC_031022_p7 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 10576 | 10980 |
| YP_009280244.1 | NC_031022_p57 | hypothetical protein | phrog_6798 | unknown function | unknown function | -1 | 44874 | 45251 |
| YP_009280235.1 | NC_031022_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40849 | 40968 |
| YP_009280264.1 | NC_031022_p77 | pyruvate formate-lyase | phrog_1209 | unknown function | unknown function | -1 | 55489 | 55857 |
| YP_009280245.1 | NC_031022_p58 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 45379 | 45669 |
| YP_009280227.1 | NC_031022_p40 | hypothetical protein | phrog_8583 | unknown function | unknown function | -1 | 37235 | 38119 |
| YP_009280212.1 | NC_031022_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24709 | 24900 |
| YP_009280314.1 | NC_031022_p127 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 93312 | 95879 |
| YP_009280266.1 | NC_031022_p79 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 56832 | 57179 |
| YP_009280300.1 | NC_031022_p113 | DNA endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 80604 | 81056 |
| YP_009280200.1 | NC_031022_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 15129 | 16505 |
| YP_009280269.1 | NC_031022_p82 | hypothetical protein | phrog_4551 | unknown function | unknown function | -1 | 58619 | 58894 |
| YP_009280272.1 | NC_031022_p85 | hypothetical protein | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 59558 | 60076 |
| YP_009280234.1 | NC_031022_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40525 | 40755 |
| YP_009280208.1 | NC_031022_p21 | hypothetical protein | phrog_1119 | Cor superinfection exclusion protein | moron, auxiliary metabolic gene and host takeover | 1 | 23792 | 24058 |
| YP_009280228.1 | NC_031022_p41 | hypothetical protein | phrog_5271 | unknown function | unknown function | -1 | 38199 | 38810 |
| YP_009280292.1 | NC_031022_p105 | phosphate starvation-inducible protein PhoH | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 74951 | 75703 |
| YP_009280224.1 | NC_031022_p37 | hypothetical protein | phrog_4227 | endonuclease nicking abasic sites generated by host uracil glycosylase Ung | moron, auxiliary metabolic gene and host takeover | 1 | 34038 | 34250 |
| YP_009280215.1 | NC_031022_p28 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26887 | 27396 |
| YP_009280306.1 | NC_031022_p119 | hypothetical protein | phrog_3696 | unknown function | unknown function | 1 | 86276 | 86572 |
| YP_009280291.1 | NC_031022_p104 | hypothetical protein | phrog_5357 | tail length tape measure protein | tail | -1 | 74752 | 74949 |
| YP_009280278.1 | NC_031022_p91 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 63444 | 64265 |
| YP_009280273.1 | NC_031022_p86 | hypothetical protein | phrog_200 | lipoprotein | other | -1 | 60362 | 61309 |
| YP_009280249.1 | NC_031022_p62 | holin | phrog_860 | holin | lysis | -1 | 47601 | 48257 |
| YP_009280303.1 | NC_031022_p116 | hypothetical protein | phrog_3611 | helicase | DNA, RNA and nucleotide metabolism | 1 | 84789 | 85493 |
| YP_009280226.1 | NC_031022_p39 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 35567 | 36106 |
| YP_009280290.1 | NC_031022_p103 | ribonucleotide reductase of class Ia (aerobic) alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 71366 | 74608 |
| YP_009280204.1 | NC_031022_p17 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 19294 | 19968 |
| YP_009280230.1 | NC_031022_p43 | hypothetical protein | phrog_6021 | unknown function | unknown function | -1 | 38995 | 39228 |
| YP_009280198.1 | NC_031022_p11 | hypothetical protein | phrog_3725 | tail completion or Neck1 protein | connector | -1 | 13790 | 14557 |
| YP_009280295.1 | NC_031022_p108 | hypothetical protein | phrog_7953 | unknown function | unknown function | 1 | 78779 | 79060 |
| YP_009280279.1 | NC_031022_p92 | tail fiber protein | phrog_1491 | tail fiber protein | tail | -1 | 64708 | 65346 |
| YP_009280225.1 | NC_031022_p38 | hypothetical protein | phrog_4379 | unknown function | unknown function | 1 | 34366 | 34710 |
| YP_009280203.1 | NC_031022_p16 | portal (connector) protein | phrog_12 | portal protein | head and packaging | -1 | 17650 | 18867 |
| YP_009280260.1 | NC_031022_p73 | hypothetical protein | phrog_4821 | unknown function | unknown function | -1 | 53973 | 54272 |
| YP_009280239.1 | NC_031022_p52 | hypothetical protein | phrog_3880 | unknown function | unknown function | -1 | 42280 | 42558 |
| YP_009280283.1 | NC_031022_p96 | hypothetical protein | phrog_4516 | unknown function | unknown function | -1 | 66662 | 67177 |
| YP_009280313.1 | NC_031022_p126 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 92359 | 93249 |
| YP_009280316.1 | NC_031022_p129 | homing endonuclease | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 97915 | 98247 |
| YP_009280205.1 | NC_031022_p18 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 20140 | 21456 |
| YP_009280197.1 | NC_031022_p10 | hypothetical protein | phrog_3907 | tail terminator | connector | -1 | 13301 | 13786 |
| YP_009280251.1 | NC_031022_p64 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 49025 | 49777 |
| YP_009280188.1 | NC_031022_p1 | hypothetical protein | phrog_1084 | unknown function | unknown function | -1 | 328 | 750 |
| YP_009280196.1 | NC_031022_p9 | tail fibers protein | phrog_3575 | major tail protein | tail | -1 | 11880 | 13274 |
| YP_009280248.1 | NC_031022_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47191 | 47328 |
| YP_009280193.1 | NC_031022_p6 | hypothetical protein | phrog_3914 | tail assembly chaperone | tail | -1 | 10146 | 10478 |
| YP_009280243.1 | NC_031022_p56 | hypothetical protein | phrog_7354 | major head protein | head and packaging | -1 | 44624 | 44869 |
| YP_009280211.1 | NC_031022_p24 | hypothetical protein | phrog_5851 | unknown function | unknown function | 1 | 24468 | 24662 |
| YP_009280238.1 | NC_031022_p51 | hypothetical protein | phrog_4984 | unknown function | unknown function | -1 | 41841 | 42026 |
| YP_009280281.1 | NC_031022_p94 | metallopeptidase | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 65652 | 66353 |
| YP_009280271.1 | NC_031022_p84 | hypothetical protein | phrog_7716 | unknown function | unknown function | -1 | 59184 | 59351 |
| YP_009280252.1 | NC_031022_p65 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50118 | 50816 |
| YP_009280296.1 | NC_031022_p109 | hypothetical protein | phrog_5236 | unknown function | unknown function | 1 | 79070 | 79273 |
| YP_009280263.1 | NC_031022_p76 | hypothetical protein | phrog_6828 | unknown function | unknown function | -1 | 55093 | 55224 |
| YP_009280221.1 | NC_031022_p34 | hypothetical protein | phrog_4263 | unknown function | unknown function | 1 | 32232 | 33218 |
| YP_009280213.1 | NC_031022_p26 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24943 | 25482 |
| YP_009280299.1 | NC_031022_p112 | hypothetical protein | phrog_2502 | unknown function | unknown function | 1 | 80072 | 80464 |
| YP_009280317.1 | NC_031022_p130 | hypothetical protein | phrog_1607 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 98768 | 99541 |
| YP_009280217.1 | NC_031022_p30 | A2 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29518 | 29934 |
| YP_009280305.1 | NC_031022_p118 | hypothetical protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 85829 | 86239 |
| YP_009280267.1 | NC_031022_p80 | hypothetical protein | phrog_5473 | unknown function | unknown function | -1 | 57291 | 57476 |
| YP_009280232.1 | NC_031022_p45 | hypothetical protein | phrog_6933 | unknown function | unknown function | -1 | 39947 | 40150 |
| YP_009280307.1 | NC_031022_p120 | DNA ligase | phrog_3359 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 87019 | 87990 |
| YP_009280247.1 | NC_031022_p60 | hypothetical protein | phrog_4328 | unknown function | unknown function | -1 | 46219 | 46623 |
| YP_009280304.1 | NC_031022_p117 | hypothetical protein | phrog_643 | transcriptional regulator | transcription regulation | 1 | 85486 | 85722 |
| YP_009280192.1 | NC_031022_p5 | tail length tape-measure protein | phrog_3779 | tail length tape measure protein | tail | -1 | 6382 | 10062 |
| YP_009280274.1 | NC_031022_p87 | hypothetical protein | phrog_11609 | unknown function | unknown function | -1 | 61321 | 61521 |
| YP_009280259.1 | NC_031022_p72 | hypothetical protein | phrog_5486 | unknown function | unknown function | -1 | 53561 | 53980 |
| YP_009280195.1 | NC_031022_p8 | tail fibers protein | phrog_3889 | base plate tail tube protein | tail | -1 | 10973 | 11875 |
| YP_009280233.1 | NC_031022_p46 | capsid and scaffold protein | phrog_4905 | unknown function | unknown function | -1 | 40206 | 40544 |
| YP_009280325.1 | NC_031022_p138 | hypothetical protein | phrog_5592 | unknown function | unknown function | 1 | 105163 | 105426 |
| YP_009280310.1 | NC_031022_p123 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 90014 | 90373 |
| YP_009280297.1 | NC_031022_p110 | hypothetical protein | phrog_18062 | Sir2 (NAD-dependent deacetylase) | DNA, RNA and nucleotide metabolism | 1 | 79335 | 79631 |
| YP_009280241.1 | NC_031022_p54 | phosphoesterase | phrog_547 | phosphoesterase | other | -1 | 43236 | 43757 |
| YP_009280318.1 | NC_031022_p131 | homing endonuclease | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 99827 | 100111 |
| YP_009280323.1 | NC_031022_p136 | ribonuclease H | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 103882 | 104757 |
| YP_009280280.1 | NC_031022_p93 | hypothetical protein | phrog_5252 | unknown function | unknown function | -1 | 65399 | 65581 |
| YP_009280298.1 | NC_031022_p111 | hypothetical protein | phrog_2502 | unknown function | unknown function | 1 | 79634 | 80062 |