Genomic map of Shigella phage SHSML-45 (NC_031022)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031022
Definition
Shigella phage SHSML-45, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; Shigella virus SHSML45.
DB of origin
REFSEQ
Length
108050
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
139
%GC
38.73
Number of singletons
4
Number of paralogs
16

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009280286.1 NC_031022_p99 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 68225 69064
YP_009280240.1 NC_031022_p53 hypothetical protein phrog_4979 unknown function unknown function -1 42637 43068
YP_009280219.1 NC_031022_p32 hypothetical protein phrog_4718 unknown function unknown function -1 30516 30719
YP_009280261.1 NC_031022_p74 hypothetical protein phrog_2855 unknown function unknown function -1 54265 54546
YP_009280282.1 NC_031022_p95 hypothetical protein phrog_4586 unknown function unknown function -1 66382 66618
YP_009280285.1 NC_031022_p98 ribonuclease HI phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 67615 68091
YP_009280220.1 NC_031022_p33 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30897 31238
YP_009280324.1 NC_031022_p137 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 104754 105200
YP_009280289.1 NC_031022_p102 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 70739 71263
YP_009280275.1 NC_031022_p88 recombination related exonuclease phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 62309 62743
YP_009280284.1 NC_031022_p97 hypothetical protein phrog_4593 unknown function unknown function -1 67261 67500
YP_009280199.1 NC_031022_p12 hypothetical protein phrog_442 head-tail adaptor connector -1 14557 15069
YP_009280319.1 NC_031022_p132 recombinase phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 100108 101085
YP_009280223.1 NC_031022_p36 hypothetical protein phrog_5607 unknown function unknown function 1 33886 34035
YP_009280309.1 NC_031022_p122 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 88965 89732
YP_009280320.1 NC_031022_p133 recombination-related endonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 101108 102904
YP_009280276.1 NC_031022_p89 hypothetical protein phrog_5077 unknown function unknown function -1 62743 62913
YP_009280231.1 NC_031022_p44 hypothetical protein phrog_4605 unknown function unknown function -1 39499 39987
YP_009280321.1 NC_031022_p134 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 103098 103400
YP_009280288.1 NC_031022_p101 ribonucleotide reductase of class Ia (aerobic) beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 69594 70739
YP_009280214.1 NC_031022_p27 hypothetical protein phrog_415 polynucleotide kinase other -1 25658 26392
YP_009280270.1 NC_031022_p83 hypothetical protein phrog_5153 unknown function unknown function -1 58985 59191
YP_009280190.1 NC_031022_p3 tail length tape-measure protein phrog_31 central tail fiber J tail -1 2813 5662
YP_009280294.1 NC_031022_p107 ribonucleotide reductase of class III (anaerobic) large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 76853 78679
YP_009280312.1 NC_031022_p125 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 91829 92362
YP_009280242.1 NC_031022_p55 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 43758 44621
YP_009280287.1 NC_031022_p100 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 69064 69597
YP_009280191.1 NC_031022_p4 hypothetical protein phrog_1302 distal tail protein tail -1 5659 6273
YP_009280216.1 NC_031022_p29 A1 protein phrog_1745 DNA transfer protein other -1 27467 29134
YP_009280257.1 NC_031022_p70 hypothetical protein phrog_5265 unknown function unknown function -1 53033 53317
YP_009280218.1 NC_031022_p31 hypothetical protein phrog_3747 unknown function unknown function -1 30036 30287
YP_009280326.1 NC_031022_p139 tail fibers protein phrog_6578 tail fiber protein tail -1 105688 107385
YP_009280237.1 NC_031022_p50 hypothetical protein phrog_4804 unknown function unknown function -1 41599 41844
YP_009280202.1 NC_031022_p15 tail fibers protein phrog_2973 Hoc-like head decoration head and packaging -1 17159 17653
YP_009280189.1 NC_031022_p2 tail fibers protein phrog_3890 straight fibre tail protein tail -1 756 2813
YP_009280246.1 NC_031022_p59 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 45683 46222
YP_009280311.1 NC_031022_p124 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 90366 91832
YP_009280250.1 NC_031022_p63 ATP-dependent Clp protease proteolytic subunit phrog_1827 ATP-dependent protease other -1 48413 49012
YP_009280255.1 NC_031022_p68 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51903 52418
YP_009280206.1 NC_031022_p19 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 21456 21938
YP_009280236.1 NC_031022_p49 hypothetical protein phrog_4731 unknown function unknown function -1 41283 41609
YP_009280302.1 NC_031022_p115 hypothetical protein phrog_5291 unknown function unknown function 1 84486 84719
YP_009280293.1 NC_031022_p106 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism 1 76003 76866
YP_009280322.1 NC_031022_p135 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 103400 103882
YP_009280254.1 NC_031022_p67 hypothetical protein phrog_4243 unknown function unknown function -1 51219 51899
YP_009280201.1 NC_031022_p14 capsid and scaffold protein phrog_80 head maturation protease head and packaging -1 16523 17155
YP_009280265.1 NC_031022_p78 hypothetical protein phrog_4760 unknown function unknown function -1 56135 56425
YP_009280229.1 NC_031022_p42 hypothetical protein phrog_5799 unknown function unknown function -1 38810 38995
YP_009280301.1 NC_031022_p114 DNA primase C phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 81713 84502
YP_009280256.1 NC_031022_p69 hypothetical protein phrog_5468 unknown function unknown function -1 52569 52916
YP_009280207.1 NC_031022_p20 receptor-binding protein phrog_4815 receptor binding tail protein tail -1 21949 23706
YP_009280277.1 NC_031022_p90 hypothetical protein phrog_938 endolysin lysis -1 62982 63431
YP_009280258.1 NC_031022_p71 hypothetical protein phrog_5792 unknown function unknown function -1 53314 53607
YP_009280308.1 NC_031022_p121 DNA ligase phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 88193 88972
YP_009280210.1 NC_031022_p23 hypothetical protein phrog_6369 unknown function unknown function 1 24355 24471
YP_009280253.1 NC_031022_p66 hypothetical protein phrog_739 Rz-like spanin lysis -1 50797 51222
YP_009280268.1 NC_031022_p81 hypothetical protein phrog_7042 unknown function unknown function -1 57876 58067
YP_009280262.1 NC_031022_p75 hypothetical protein phrog_5021 unknown function unknown function -1 54624 54971
YP_009280315.1 NC_031022_p128 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 96366 97712
YP_009280209.1 NC_031022_p22 hypothetical protein phrog_8596 unknown function unknown function 1 24236 24364
YP_009280222.1 NC_031022_p35 hypothetical protein phrog_6741 unknown function unknown function 1 33284 33778
YP_009280194.1 NC_031022_p7 hypothetical protein phrog_313 Tail assembly chaperone tail -1 10576 10980
YP_009280244.1 NC_031022_p57 hypothetical protein phrog_6798 unknown function unknown function -1 44874 45251
YP_009280235.1 NC_031022_p48 hypothetical protein singleton unknown function unknown function 1 40849 40968
YP_009280264.1 NC_031022_p77 pyruvate formate-lyase phrog_1209 unknown function unknown function -1 55489 55857
YP_009280245.1 NC_031022_p58 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 45379 45669
YP_009280227.1 NC_031022_p40 hypothetical protein phrog_8583 unknown function unknown function -1 37235 38119
YP_009280212.1 NC_031022_p25 hypothetical protein singleton unknown function unknown function 1 24709 24900
YP_009280314.1 NC_031022_p127 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 93312 95879
YP_009280266.1 NC_031022_p79 hypothetical protein phrog_3972 unknown function unknown function -1 56832 57179
YP_009280300.1 NC_031022_p113 DNA endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 80604 81056
YP_009280200.1 NC_031022_p13 major capsid protein phrog_10 major head protein head and packaging -1 15129 16505
YP_009280269.1 NC_031022_p82 hypothetical protein phrog_4551 unknown function unknown function -1 58619 58894
YP_009280272.1 NC_031022_p85 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism -1 59558 60076
YP_009280234.1 NC_031022_p47 hypothetical protein singleton unknown function unknown function -1 40525 40755
YP_009280208.1 NC_031022_p21 hypothetical protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 23792 24058
YP_009280228.1 NC_031022_p41 hypothetical protein phrog_5271 unknown function unknown function -1 38199 38810
YP_009280292.1 NC_031022_p105 phosphate starvation-inducible protein PhoH phrog_170 PhoH-like phosphate starvation-inducible other -1 74951 75703
YP_009280224.1 NC_031022_p37 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 34038 34250
YP_009280215.1 NC_031022_p28 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26887 27396
YP_009280306.1 NC_031022_p119 hypothetical protein phrog_3696 unknown function unknown function 1 86276 86572
YP_009280291.1 NC_031022_p104 hypothetical protein phrog_5357 tail length tape measure protein tail -1 74752 74949
YP_009280278.1 NC_031022_p91 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 63444 64265
YP_009280273.1 NC_031022_p86 hypothetical protein phrog_200 lipoprotein other -1 60362 61309
YP_009280249.1 NC_031022_p62 holin phrog_860 holin lysis -1 47601 48257
YP_009280303.1 NC_031022_p116 hypothetical protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 84789 85493
YP_009280226.1 NC_031022_p39 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 35567 36106
YP_009280290.1 NC_031022_p103 ribonucleotide reductase of class Ia (aerobic) alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 71366 74608
YP_009280204.1 NC_031022_p17 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 19294 19968
YP_009280230.1 NC_031022_p43 hypothetical protein phrog_6021 unknown function unknown function -1 38995 39228
YP_009280198.1 NC_031022_p11 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 13790 14557
YP_009280295.1 NC_031022_p108 hypothetical protein phrog_7953 unknown function unknown function 1 78779 79060
YP_009280279.1 NC_031022_p92 tail fiber protein phrog_1491 tail fiber protein tail -1 64708 65346
YP_009280225.1 NC_031022_p38 hypothetical protein phrog_4379 unknown function unknown function 1 34366 34710
YP_009280203.1 NC_031022_p16 portal (connector) protein phrog_12 portal protein head and packaging -1 17650 18867
YP_009280260.1 NC_031022_p73 hypothetical protein phrog_4821 unknown function unknown function -1 53973 54272
YP_009280239.1 NC_031022_p52 hypothetical protein phrog_3880 unknown function unknown function -1 42280 42558
YP_009280283.1 NC_031022_p96 hypothetical protein phrog_4516 unknown function unknown function -1 66662 67177
YP_009280313.1 NC_031022_p126 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 92359 93249
YP_009280316.1 NC_031022_p129 homing endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 97915 98247
YP_009280205.1 NC_031022_p18 terminase large subunit phrog_2 terminase large subunit head and packaging -1 20140 21456
YP_009280197.1 NC_031022_p10 hypothetical protein phrog_3907 tail terminator connector -1 13301 13786
YP_009280251.1 NC_031022_p64 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 49025 49777
YP_009280188.1 NC_031022_p1 hypothetical protein phrog_1084 unknown function unknown function -1 328 750
YP_009280196.1 NC_031022_p9 tail fibers protein phrog_3575 major tail protein tail -1 11880 13274
YP_009280248.1 NC_031022_p61 hypothetical protein singleton unknown function unknown function -1 47191 47328
YP_009280193.1 NC_031022_p6 hypothetical protein phrog_3914 tail assembly chaperone tail -1 10146 10478
YP_009280243.1 NC_031022_p56 hypothetical protein phrog_7354 major head protein head and packaging -1 44624 44869
YP_009280211.1 NC_031022_p24 hypothetical protein phrog_5851 unknown function unknown function 1 24468 24662
YP_009280238.1 NC_031022_p51 hypothetical protein phrog_4984 unknown function unknown function -1 41841 42026
YP_009280281.1 NC_031022_p94 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 65652 66353
YP_009280271.1 NC_031022_p84 hypothetical protein phrog_7716 unknown function unknown function -1 59184 59351
YP_009280252.1 NC_031022_p65 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 50118 50816
YP_009280296.1 NC_031022_p109 hypothetical protein phrog_5236 unknown function unknown function 1 79070 79273
YP_009280263.1 NC_031022_p76 hypothetical protein phrog_6828 unknown function unknown function -1 55093 55224
YP_009280221.1 NC_031022_p34 hypothetical protein phrog_4263 unknown function unknown function 1 32232 33218
YP_009280213.1 NC_031022_p26 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24943 25482
YP_009280299.1 NC_031022_p112 hypothetical protein phrog_2502 unknown function unknown function 1 80072 80464
YP_009280317.1 NC_031022_p130 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 98768 99541
YP_009280217.1 NC_031022_p30 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 29518 29934
YP_009280305.1 NC_031022_p118 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 85829 86239
YP_009280267.1 NC_031022_p80 hypothetical protein phrog_5473 unknown function unknown function -1 57291 57476
YP_009280232.1 NC_031022_p45 hypothetical protein phrog_6933 unknown function unknown function -1 39947 40150
YP_009280307.1 NC_031022_p120 DNA ligase phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 87019 87990
YP_009280247.1 NC_031022_p60 hypothetical protein phrog_4328 unknown function unknown function -1 46219 46623
YP_009280304.1 NC_031022_p117 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 85486 85722
YP_009280192.1 NC_031022_p5 tail length tape-measure protein phrog_3779 tail length tape measure protein tail -1 6382 10062
YP_009280274.1 NC_031022_p87 hypothetical protein phrog_11609 unknown function unknown function -1 61321 61521
YP_009280259.1 NC_031022_p72 hypothetical protein phrog_5486 unknown function unknown function -1 53561 53980
YP_009280195.1 NC_031022_p8 tail fibers protein phrog_3889 base plate tail tube protein tail -1 10973 11875
YP_009280233.1 NC_031022_p46 capsid and scaffold protein phrog_4905 unknown function unknown function -1 40206 40544
YP_009280325.1 NC_031022_p138 hypothetical protein phrog_5592 unknown function unknown function 1 105163 105426
YP_009280310.1 NC_031022_p123 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 90014 90373
YP_009280297.1 NC_031022_p110 hypothetical protein phrog_18062 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 79335 79631
YP_009280241.1 NC_031022_p54 phosphoesterase phrog_547 phosphoesterase other -1 43236 43757
YP_009280318.1 NC_031022_p131 homing endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 99827 100111
YP_009280323.1 NC_031022_p136 ribonuclease H phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 103882 104757
YP_009280280.1 NC_031022_p93 hypothetical protein phrog_5252 unknown function unknown function -1 65399 65581
YP_009280298.1 NC_031022_p111 hypothetical protein phrog_2502 unknown function unknown function 1 79634 80062