Genomic map of Salmonella phage phSE-2 (NC_031026)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031026
Definition
Salmonella phage phSE-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus phSE2.
DB of origin
REFSEQ
Length
49167
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
83
%GC
42.88
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009280781.1 NC_031026_p61 hypothetical protein phrog_757 DNA methyltransferase other -1 41071 41766
YP_009280785.1 NC_031026_p65 hypothetical protein phrog_5016 unknown function unknown function -1 42635 42868
YP_009280789.1 NC_031026_p69 hypothetical protein phrog_7421 unknown function unknown function -1 43751 43969
YP_009280726.1 NC_031026_p6 hypothetical protein phrog_13504 unknown function unknown function 1 1450 1962
YP_009280768.1 NC_031026_p48 hypothetical protein phrog_2676 unknown function unknown function 1 34814 35044
YP_009280722.1 NC_031026_p2 hypothetical protein phrog_9122 unknown function unknown function 1 657 854
YP_009280780.1 NC_031026_p60 hypothetical protein phrog_2684 unknown function unknown function -1 40636 40998
YP_009280776.1 NC_031026_p56 hypothetical protein phrog_9539 unknown function unknown function -1 38227 38364
YP_009280735.1 NC_031026_p15 terminase small subunit phrog_606 terminase small subunit head and packaging 1 4070 4594
YP_009280745.1 NC_031026_p25 hypothetical protein phrog_161 head closure Hc1 connector 1 12133 12504
YP_009280792.1 NC_031026_p72 hypothetical protein phrog_28623 unknown function unknown function 1 45054 45341
YP_009280733.1 NC_031026_p13 hypothetical protein phrog_2919 unknown function unknown function 1 3568 3750
YP_009280783.1 NC_031026_p63 hypothetical protein phrog_4344 unknown function unknown function -1 42191 42412
YP_009280775.1 NC_031026_p55 hypothetical protein phrog_10679 unknown function unknown function -1 37929 38150
YP_009280803.1 NC_031026_p83 hypothetical protein phrog_22783 unknown function unknown function 1 48685 48996
YP_009280749.1 NC_031026_p29 hypothetical protein phrog_569 tail length tape measure protein tail 1 14074 14388
YP_009280800.1 NC_031026_p80 3'-phosphatase, 5'-polynucleotide kinase phrog_415 polynucleotide kinase other 1 47679 48242
YP_009280790.1 NC_031026_p70 hypothetical protein phrog_7287 unknown function unknown function -1 44044 44328
YP_009280779.1 NC_031026_p59 hypothetical protein phrog_12725 unknown function unknown function -1 40391 40639
YP_009280723.1 NC_031026_p3 hypothetical protein phrog_20227 unknown function unknown function 1 856 1020
YP_009280750.1 NC_031026_p30 hypothetical protein phrog_680 tail length tape measure protein tail 1 14436 14705
YP_009280770.1 NC_031026_p50 hypothetical protein phrog_2817 unknown function unknown function 1 35261 35503
YP_009280769.1 NC_031026_p49 hypothetical protein phrog_2180 unknown function unknown function 1 35116 35280
YP_009280738.1 NC_031026_p18 hypothetical protein phrog_324 head morphogenesis head and packaging 1 7523 8194
YP_009280797.1 NC_031026_p77 hypothetical protein phrog_13854 unknown function unknown function 1 46533 46790
YP_009280801.1 NC_031026_p81 hypothetical protein phrog_14011 unknown function unknown function 1 48223 48411
YP_009280758.1 NC_031026_p38 tail length tape-measure protein phrog_11265 tail length tape measure protein tail 1 25586 25876
YP_009280727.1 NC_031026_p7 hypothetical protein phrog_6031 unknown function unknown function 1 2037 2246
YP_009280739.1 NC_031026_p19 capsid and scaffold protein phrog_530 head maturation protease head and packaging 1 8191 9300
YP_009280772.1 NC_031026_p52 holin phrog_2877 holin lysis 1 36814 37038
YP_009280756.1 NC_031026_p36 tail fiber protein phrog_31 central tail fiber J tail 1 20218 23994
YP_009280799.1 NC_031026_p79 hypothetical protein phrog_8382 unknown function unknown function 1 47190 47495
YP_009280777.1 NC_031026_p57 hypothetical protein phrog_2794 unknown function unknown function -1 38348 38740
YP_009280763.1 NC_031026_p43 hypothetical protein phrog_2856 transcriptional regulator transcription regulation -1 30640 31248
YP_009280778.1 NC_031026_p58 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 38743 40323
YP_009280787.1 NC_031026_p67 hypothetical protein phrog_6503 unknown function unknown function -1 43327 43521
YP_009280724.1 NC_031026_p4 hypothetical protein phrog_14912 unknown function unknown function 1 1013 1195
YP_009280746.1 NC_031026_p26 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 12497 12937
YP_009280774.1 NC_031026_p54 hypothetical protein phrog_1804 Rz-like spanin lysis 1 37526 37915
YP_009280762.1 NC_031026_p42 DNA primase/helicase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 29655 30581
YP_009280728.1 NC_031026_p8 hypothetical protein phrog_11097 unknown function unknown function 1 2243 2500
YP_009280788.1 NC_031026_p68 hypothetical protein phrog_14152 unknown function unknown function -1 43518 43754
YP_009280771.1 NC_031026_p51 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 35587 36702
YP_009280767.1 NC_031026_p47 DNA adenine methyltransferase phrog_111 DNA methyltransferase other 1 34072 34812
YP_009280748.1 NC_031026_p28 tail fibers protein phrog_584 major tail protein tail 1 13334 13996
YP_009280784.1 NC_031026_p64 hypothetical protein phrog_16768 unknown function unknown function -1 42471 42638
YP_009280791.1 NC_031026_p71 hypothetical protein singleton unknown function unknown function -1 44975 45091
YP_009280725.1 NC_031026_p5 hypothetical protein phrog_8758 unknown function unknown function 1 1192 1437
YP_009280795.1 NC_031026_p75 hypothetical protein phrog_4653 unknown function unknown function 1 46104 46262
YP_009280754.1 NC_031026_p34 tail assembly protein phrog_30 minor tail protein tail 1 18822 19544
YP_009280793.1 NC_031026_p73 hypothetical protein phrog_4841 unknown function unknown function 1 45353 45796
YP_009280736.1 NC_031026_p16 terminase large subunit phrog_38 terminase large subunit head and packaging 1 4606 6177
YP_009280782.1 NC_031026_p62 hypothetical protein phrog_9323 unknown function unknown function -1 41965 42189
YP_009280734.1 NC_031026_p14 hypothetical protein phrog_5976 unknown function unknown function 1 3750 3980
YP_009280798.1 NC_031026_p78 hypothetical protein phrog_6006 unknown function unknown function 1 46940 47116
YP_009280773.1 NC_031026_p53 lysin phrog_7 endolysin lysis 1 37038 37529
YP_009280761.1 NC_031026_p41 tail fibers protein phrog_5481 tail fiber protein tail -1 27083 29494
YP_009280729.1 NC_031026_p9 hypothetical protein phrog_11192 unknown function unknown function 1 2497 2823
YP_009280732.1 NC_031026_p12 hypothetical protein phrog_6666 unknown function unknown function 1 3423 3584
YP_009280757.1 NC_031026_p37 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 24455 25510
YP_009280737.1 NC_031026_p17 portal protein phrog_146 portal protein head and packaging 1 6231 7526
YP_009280721.1 NC_031026_p1 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 1 576
YP_009280744.1 NC_031026_p24 hypothetical protein phrog_302 virion structural protein head and packaging 1 11732 12136
YP_009280753.1 NC_031026_p33 minor tail protein phrog_18 minor tail protein tail 1 18067 18825
YP_009280741.1 NC_031026_p21 hypothetical protein phrog_1989 unknown function unknown function 1 9845 10285
YP_009280766.1 NC_031026_p46 hypothetical protein phrog_7420 unknown function unknown function 1 33792 34070
YP_009280759.1 NC_031026_p39 recombinase phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 25923 26585
YP_009280742.1 NC_031026_p22 hypothetical protein phrog_264 major head protein head and packaging 1 10375 11352
YP_009280764.1 NC_031026_p44 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 31337 33310
YP_009280802.1 NC_031026_p82 hypothetical protein phrog_9755 unknown function unknown function 1 48422 48607
YP_009280740.1 NC_031026_p20 hypothetical protein phrog_1989 unknown function unknown function 1 9313 9801
YP_009280796.1 NC_031026_p76 hypothetical protein phrog_1972 unknown function unknown function 1 46246 46527
YP_009280794.1 NC_031026_p74 hypothetical protein phrog_22864 unknown function unknown function -1 45913 46035
YP_009280760.1 NC_031026_p40 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 26624 27049
YP_009280743.1 NC_031026_p23 hypothetical protein phrog_2716 unknown function unknown function 1 11414 11686
YP_009280730.1 NC_031026_p10 hypothetical protein phrog_1312 unknown function unknown function 1 2883 3011
YP_009280765.1 NC_031026_p45 hypothetical protein phrog_824 unknown function unknown function 1 33313 33720
YP_009280731.1 NC_031026_p11 hypothetical protein phrog_303 unknown function unknown function 1 3013 3240
YP_009280751.1 NC_031026_p31 tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail 1 14744 17653
YP_009280752.1 NC_031026_p32 minor tail protein phrog_14 minor tail protein tail 1 17653 18000
YP_009280786.1 NC_031026_p66 hypothetical protein phrog_6147 unknown function unknown function -1 42868 43149
YP_009280755.1 NC_031026_p35 tail assembly protein phrog_32 tail assembly protein tail 1 19537 20136
YP_009280747.1 NC_031026_p27 hypothetical protein phrog_179 tail terminator connector 1 12927 13319