| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031026 |
Definition |
Salmonella phage phSE-2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus phSE2. |
DB of origin |
REFSEQ |
Length |
49167 |
Host Name |
Salmonella typhimurium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
42.88 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009280781.1 | NC_031026_p61 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 41071 | 41766 |
| YP_009280785.1 | NC_031026_p65 | hypothetical protein | phrog_5016 | unknown function | unknown function | -1 | 42635 | 42868 |
| YP_009280789.1 | NC_031026_p69 | hypothetical protein | phrog_7421 | unknown function | unknown function | -1 | 43751 | 43969 |
| YP_009280726.1 | NC_031026_p6 | hypothetical protein | phrog_13504 | unknown function | unknown function | 1 | 1450 | 1962 |
| YP_009280768.1 | NC_031026_p48 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 34814 | 35044 |
| YP_009280722.1 | NC_031026_p2 | hypothetical protein | phrog_9122 | unknown function | unknown function | 1 | 657 | 854 |
| YP_009280780.1 | NC_031026_p60 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 40636 | 40998 |
| YP_009280776.1 | NC_031026_p56 | hypothetical protein | phrog_9539 | unknown function | unknown function | -1 | 38227 | 38364 |
| YP_009280735.1 | NC_031026_p15 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 4070 | 4594 |
| YP_009280745.1 | NC_031026_p25 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 12133 | 12504 |
| YP_009280792.1 | NC_031026_p72 | hypothetical protein | phrog_28623 | unknown function | unknown function | 1 | 45054 | 45341 |
| YP_009280733.1 | NC_031026_p13 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 3568 | 3750 |
| YP_009280783.1 | NC_031026_p63 | hypothetical protein | phrog_4344 | unknown function | unknown function | -1 | 42191 | 42412 |
| YP_009280775.1 | NC_031026_p55 | hypothetical protein | phrog_10679 | unknown function | unknown function | -1 | 37929 | 38150 |
| YP_009280803.1 | NC_031026_p83 | hypothetical protein | phrog_22783 | unknown function | unknown function | 1 | 48685 | 48996 |
| YP_009280749.1 | NC_031026_p29 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 14074 | 14388 |
| YP_009280800.1 | NC_031026_p80 | 3'-phosphatase, 5'-polynucleotide kinase | phrog_415 | polynucleotide kinase | other | 1 | 47679 | 48242 |
| YP_009280790.1 | NC_031026_p70 | hypothetical protein | phrog_7287 | unknown function | unknown function | -1 | 44044 | 44328 |
| YP_009280779.1 | NC_031026_p59 | hypothetical protein | phrog_12725 | unknown function | unknown function | -1 | 40391 | 40639 |
| YP_009280723.1 | NC_031026_p3 | hypothetical protein | phrog_20227 | unknown function | unknown function | 1 | 856 | 1020 |
| YP_009280750.1 | NC_031026_p30 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 14436 | 14705 |
| YP_009280770.1 | NC_031026_p50 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 35261 | 35503 |
| YP_009280769.1 | NC_031026_p49 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 35116 | 35280 |
| YP_009280738.1 | NC_031026_p18 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | 1 | 7523 | 8194 |
| YP_009280797.1 | NC_031026_p77 | hypothetical protein | phrog_13854 | unknown function | unknown function | 1 | 46533 | 46790 |
| YP_009280801.1 | NC_031026_p81 | hypothetical protein | phrog_14011 | unknown function | unknown function | 1 | 48223 | 48411 |
| YP_009280758.1 | NC_031026_p38 | tail length tape-measure protein | phrog_11265 | tail length tape measure protein | tail | 1 | 25586 | 25876 |
| YP_009280727.1 | NC_031026_p7 | hypothetical protein | phrog_6031 | unknown function | unknown function | 1 | 2037 | 2246 |
| YP_009280739.1 | NC_031026_p19 | capsid and scaffold protein | phrog_530 | head maturation protease | head and packaging | 1 | 8191 | 9300 |
| YP_009280772.1 | NC_031026_p52 | holin | phrog_2877 | holin | lysis | 1 | 36814 | 37038 |
| YP_009280756.1 | NC_031026_p36 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 20218 | 23994 |
| YP_009280799.1 | NC_031026_p79 | hypothetical protein | phrog_8382 | unknown function | unknown function | 1 | 47190 | 47495 |
| YP_009280777.1 | NC_031026_p57 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 38348 | 38740 |
| YP_009280763.1 | NC_031026_p43 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 30640 | 31248 |
| YP_009280778.1 | NC_031026_p58 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 38743 | 40323 |
| YP_009280787.1 | NC_031026_p67 | hypothetical protein | phrog_6503 | unknown function | unknown function | -1 | 43327 | 43521 |
| YP_009280724.1 | NC_031026_p4 | hypothetical protein | phrog_14912 | unknown function | unknown function | 1 | 1013 | 1195 |
| YP_009280746.1 | NC_031026_p26 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12497 | 12937 |
| YP_009280774.1 | NC_031026_p54 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 37526 | 37915 |
| YP_009280762.1 | NC_031026_p42 | DNA primase/helicase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 29655 | 30581 |
| YP_009280728.1 | NC_031026_p8 | hypothetical protein | phrog_11097 | unknown function | unknown function | 1 | 2243 | 2500 |
| YP_009280788.1 | NC_031026_p68 | hypothetical protein | phrog_14152 | unknown function | unknown function | -1 | 43518 | 43754 |
| YP_009280771.1 | NC_031026_p51 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 35587 | 36702 |
| YP_009280767.1 | NC_031026_p47 | DNA adenine methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 34072 | 34812 |
| YP_009280748.1 | NC_031026_p28 | tail fibers protein | phrog_584 | major tail protein | tail | 1 | 13334 | 13996 |
| YP_009280784.1 | NC_031026_p64 | hypothetical protein | phrog_16768 | unknown function | unknown function | -1 | 42471 | 42638 |
| YP_009280791.1 | NC_031026_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44975 | 45091 |
| YP_009280725.1 | NC_031026_p5 | hypothetical protein | phrog_8758 | unknown function | unknown function | 1 | 1192 | 1437 |
| YP_009280795.1 | NC_031026_p75 | hypothetical protein | phrog_4653 | unknown function | unknown function | 1 | 46104 | 46262 |
| YP_009280754.1 | NC_031026_p34 | tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 18822 | 19544 |
| YP_009280793.1 | NC_031026_p73 | hypothetical protein | phrog_4841 | unknown function | unknown function | 1 | 45353 | 45796 |
| YP_009280736.1 | NC_031026_p16 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 4606 | 6177 |
| YP_009280782.1 | NC_031026_p62 | hypothetical protein | phrog_9323 | unknown function | unknown function | -1 | 41965 | 42189 |
| YP_009280734.1 | NC_031026_p14 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 3750 | 3980 |
| YP_009280798.1 | NC_031026_p78 | hypothetical protein | phrog_6006 | unknown function | unknown function | 1 | 46940 | 47116 |
| YP_009280773.1 | NC_031026_p53 | lysin | phrog_7 | endolysin | lysis | 1 | 37038 | 37529 |
| YP_009280761.1 | NC_031026_p41 | tail fibers protein | phrog_5481 | tail fiber protein | tail | -1 | 27083 | 29494 |
| YP_009280729.1 | NC_031026_p9 | hypothetical protein | phrog_11192 | unknown function | unknown function | 1 | 2497 | 2823 |
| YP_009280732.1 | NC_031026_p12 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 3423 | 3584 |
| YP_009280757.1 | NC_031026_p37 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 24455 | 25510 |
| YP_009280737.1 | NC_031026_p17 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 6231 | 7526 |
| YP_009280721.1 | NC_031026_p1 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 1 | 576 |
| YP_009280744.1 | NC_031026_p24 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 11732 | 12136 |
| YP_009280753.1 | NC_031026_p33 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 18067 | 18825 |
| YP_009280741.1 | NC_031026_p21 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 9845 | 10285 |
| YP_009280766.1 | NC_031026_p46 | hypothetical protein | phrog_7420 | unknown function | unknown function | 1 | 33792 | 34070 |
| YP_009280759.1 | NC_031026_p39 | recombinase | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 25923 | 26585 |
| YP_009280742.1 | NC_031026_p22 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 10375 | 11352 |
| YP_009280764.1 | NC_031026_p44 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 31337 | 33310 |
| YP_009280802.1 | NC_031026_p82 | hypothetical protein | phrog_9755 | unknown function | unknown function | 1 | 48422 | 48607 |
| YP_009280740.1 | NC_031026_p20 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 9313 | 9801 |
| YP_009280796.1 | NC_031026_p76 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 46246 | 46527 |
| YP_009280794.1 | NC_031026_p74 | hypothetical protein | phrog_22864 | unknown function | unknown function | -1 | 45913 | 46035 |
| YP_009280760.1 | NC_031026_p40 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 26624 | 27049 |
| YP_009280743.1 | NC_031026_p23 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 11414 | 11686 |
| YP_009280730.1 | NC_031026_p10 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 2883 | 3011 |
| YP_009280765.1 | NC_031026_p45 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 33313 | 33720 |
| YP_009280731.1 | NC_031026_p11 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 3013 | 3240 |
| YP_009280751.1 | NC_031026_p31 | tail length tape-measure protein 1 | phrog_24 | tail length tape measure protein | tail | 1 | 14744 | 17653 |
| YP_009280752.1 | NC_031026_p32 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 17653 | 18000 |
| YP_009280786.1 | NC_031026_p66 | hypothetical protein | phrog_6147 | unknown function | unknown function | -1 | 42868 | 43149 |
| YP_009280755.1 | NC_031026_p35 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 19537 | 20136 |
| YP_009280747.1 | NC_031026_p27 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 12927 | 13319 |