Genomic map of Gordonia phage Cucurbita (NC_031029)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031029
Definition
Gordonia phage Cucurbita, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Smoothievirus; unclassified Smoothievirus.
DB of origin
REFSEQ
Length
93686
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
178
%GC
61.98
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009281298.1 NC_031029_p136 hypothetical protein phrog_16254 unknown function unknown function 1 79310 80443
YP_009281293.1 NC_031029_p131 hypothetical protein phrog_14081 unknown function unknown function 1 77155 77472
YP_009281237.1 NC_031029_p75 hypothetical protein phrog_15957 unknown function unknown function 1 51655 51966
YP_009281331.1 NC_031029_p169 hypothetical protein phrog_11293 unknown function unknown function -1 89276 89758
YP_009281330.1 NC_031029_p168 hypothetical protein phrog_16153 unknown function unknown function -1 89100 89279
YP_009281189.1 NC_031029_p27 scaffolding protein phrog_4708 head scaffolding protein head and packaging 1 14326 15168
YP_009281249.1 NC_031029_p87 hypothetical protein phrog_14230 unknown function unknown function 1 58997 59614
YP_009281320.1 NC_031029_p158 hypothetical protein phrog_13323 unknown function unknown function -1 86710 86826
YP_009281319.1 NC_031029_p157 hypothetical protein phrog_16265 unknown function unknown function -1 86516 86704
YP_009281302.1 NC_031029_p140 hypothetical protein phrog_1042 unknown function unknown function 1 81747 82046
YP_009281171.1 NC_031029_p9 hypothetical protein phrog_301 secreted protein other 1 2375 2713
YP_009281222.1 NC_031029_p60 hypothetical protein phrog_13939 unknown function unknown function 1 45081 45317
YP_009281165.1 NC_031029_p3 hypothetical protein phrog_14795 unknown function unknown function -1 545 715
YP_009281194.1 NC_031029_p32 hypothetical protein phrog_501 head closure Hc1 connector 1 17435 17788
YP_009281259.1 NC_031029_p97 hypothetical protein phrog_10563 unknown function unknown function 1 63732 64268
YP_009281244.1 NC_031029_p82 hypothetical protein phrog_16364 unknown function unknown function 1 56549 56830
YP_009281311.1 NC_031029_p149 hypothetical protein phrog_15457 unknown function unknown function -1 84654 84836
YP_009281263.1 NC_031029_p101 hypothetical protein phrog_14196 phosphohydrolase other 1 65286 65594
YP_009281181.1 NC_031029_p19 transposase phrog_151 transposase integration and excision 1 6504 6821
YP_009281340.1 NC_031029_p178 hypothetical protein singleton unknown function unknown function -1 93377 93487
YP_009281167.1 NC_031029_p5 hypothetical protein phrog_15018 unknown function unknown function -1 876 1247
YP_009281324.1 NC_031029_p162 hypothetical protein phrog_23227 unknown function unknown function -1 87586 87669
YP_009281216.1 NC_031029_p54 DNA bridging protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 42210 42545
YP_009281322.1 NC_031029_p160 hypothetical protein phrog_9204 unknown function unknown function -1 87157 87342
YP_009281252.1 NC_031029_p90 hypothetical protein phrog_13104 unknown function unknown function 1 60447 60710
YP_009281257.1 NC_031029_p95 HTH DNA binding domain protein phrog_1590 unknown function unknown function 1 61609 62745
YP_009281241.1 NC_031029_p79 immunity repressor phrog_13730 transcriptional repressor transcription regulation -1 54406 54831
YP_009281200.1 NC_031029_p38 tail assembly chaperone phrog_2624 tail assembly chaperone tail 1 20219 21180
YP_009281174.1 NC_031029_p12 hypothetical protein phrog_16133 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3116 3283
YP_009281235.1 NC_031029_p73 hypothetical protein phrog_14684 unknown function unknown function 1 51306 51479
YP_009281275.1 NC_031029_p113 hypothetical protein phrog_14402 unknown function unknown function 1 69398 69763
YP_009281185.1 NC_031029_p23 hypothetical protein phrog_226 minor tail protein tail 1 9406 9972
YP_009281205.1 NC_031029_p43 lysin A, cysteine protease domain phrog_6007 endolysin lysis 1 32629 33270
YP_009281196.1 NC_031029_p34 hypothetical protein phrog_123 tail terminator connector 1 18232 18696
YP_009281188.1 NC_031029_p26 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 13346 14266
YP_009281284.1 NC_031029_p122 hypothetical protein phrog_15008 unknown function unknown function 1 73691 73915
YP_009281299.1 NC_031029_p137 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 80440 80829
YP_009281190.1 NC_031029_p28 head decoration protein phrog_3583 head decoration head and packaging 1 15181 15579
YP_009281267.1 NC_031029_p105 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 66650 67054
YP_009281296.1 NC_031029_p134 hypothetical protein phrog_15267 DNA helicase DNA, RNA and nucleotide metabolism 1 78303 78503
YP_009281187.1 NC_031029_p25 portal protein phrog_104 portal protein head and packaging 1 11733 13349
YP_009281248.1 NC_031029_p86 hypothetical protein phrog_15274 unknown function unknown function 1 58767 59000
YP_009281177.1 NC_031029_p15 hypothetical protein phrog_6944 unknown function unknown function 1 3839 4630
YP_009281253.1 NC_031029_p91 HTH DNA binding protein phrog_66 excisionase and transcriptional regulator integration and excision 1 60707 60907
YP_009281204.1 NC_031029_p42 minor tail protein phrog_110 minor tail protein tail 1 30901 32592
YP_009281264.1 NC_031029_p102 hypothetical protein phrog_13552 unknown function unknown function 1 65591 65896
YP_009281332.1 NC_031029_p170 hypothetical protein phrog_10987 unknown function unknown function -1 89760 89867
YP_009281281.1 NC_031029_p119 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 72611 73120
YP_009281202.1 NC_031029_p40 tape measure protein phrog_7025 tail length tape measure protein tail 1 21203 29998
YP_009281338.1 NC_031029_p176 hypothetical protein phrog_9377 unknown function unknown function -1 92638 92814
YP_009281300.1 NC_031029_p138 hypothetical protein phrog_11181 unknown function unknown function 1 80826 81023
YP_009281176.1 NC_031029_p14 hypothetical protein phrog_16096 unknown function unknown function 1 3606 3839
YP_009281318.1 NC_031029_p156 hypothetical protein phrog_14522 unknown function unknown function -1 86250 86519
YP_009281285.1 NC_031029_p123 hypothetical protein phrog_6554 unknown function unknown function 1 73912 74181
YP_009281227.1 NC_031029_p65 hypothetical protein phrog_13648 unknown function unknown function 1 47609 48061
YP_009281178.1 NC_031029_p16 hypothetical protein phrog_16046 unknown function unknown function 1 4630 4920
YP_009281280.1 NC_031029_p118 NrdH-like glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 72310 72600
YP_009281256.1 NC_031029_p94 hypothetical protein phrog_11291 unknown function unknown function 1 61380 61577
YP_009281265.1 NC_031029_p103 hypothetical protein phrog_14299 unknown function unknown function 1 65889 66203
YP_009281279.1 NC_031029_p117 hypothetical protein phrog_13215 unknown function unknown function 1 72140 72313
YP_009281220.1 NC_031029_p58 exonuclease VII small subunit phrog_13423 exonuclease DNA, RNA and nucleotide metabolism 1 44738 44932
YP_009281168.1 NC_031029_p6 hypothetical protein phrog_15859 unknown function unknown function -1 1247 1513
YP_009281301.1 NC_031029_p139 lysin B phrog_6187 unknown function unknown function 1 81111 81734
YP_009281218.1 NC_031029_p56 hypothetical protein phrog_15635 unknown function unknown function 1 43362 43556
YP_009281339.1 NC_031029_p177 hypothetical protein phrog_16576 unknown function unknown function -1 92934 93338
YP_009281233.1 NC_031029_p71 hypothetical protein phrog_8575 unknown function unknown function 1 50841 51065
YP_009281292.1 NC_031029_p130 nucleotidyltransferase phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 76451 77158
YP_009281316.1 NC_031029_p154 hypothetical protein phrog_11957 unknown function unknown function -1 85841 85987
YP_009281212.1 NC_031029_p50 hypothetical protein phrog_2689 minor tail protein tail 1 36688 38520
YP_009281261.1 NC_031029_p99 MazG-like nucleoside triphosphate pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other 1 64607 64945
YP_009281336.1 NC_031029_p174 hypothetical protein phrog_9377 unknown function unknown function -1 91461 91637
YP_009281221.1 NC_031029_p59 hypothetical protein phrog_11909 unknown function unknown function 1 44932 45084
YP_009281260.1 NC_031029_p98 hypothetical protein phrog_14521 unknown function unknown function 1 64268 64603
YP_009281166.1 NC_031029_p4 hypothetical protein phrog_13839 DNA polymerase DNA, RNA and nucleotide metabolism -1 712 879
YP_009281312.1 NC_031029_p150 hypothetical protein phrog_13514 unknown function unknown function -1 84820 85029
YP_009281282.1 NC_031029_p120 hypothetical protein phrog_14134 unknown function unknown function 1 73124 73405
YP_009281228.1 NC_031029_p66 RNA-splicing ligase phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 48083 49300
YP_009281266.1 NC_031029_p104 hypothetical protein phrog_12889 unknown function unknown function 1 66256 66633
YP_009281211.1 NC_031029_p49 minor tail protein phrog_4120 minor tail protein tail 1 35573 36655
YP_009281242.1 NC_031029_p80 hypothetical protein phrog_16610 unknown function unknown function 1 54988 55152
YP_009281294.1 NC_031029_p132 hypothetical protein phrog_8313 unknown function unknown function 1 77474 78103
YP_009281250.1 NC_031029_p88 hypothetical protein phrog_10666 unknown function unknown function 1 59607 59924
YP_009281306.1 NC_031029_p144 hypothetical protein phrog_15818 unknown function unknown function -1 83148 83489
YP_009281328.1 NC_031029_p166 hypothetical protein phrog_15104 unknown function unknown function -1 88323 88451
YP_009281184.1 NC_031029_p22 hypothetical protein phrog_11962 unknown function unknown function 1 8818 9060
YP_009281269.1 NC_031029_p107 hypothetical protein phrog_13683 unknown function unknown function 1 67299 67613
YP_009281163.1 NC_031029_p1 hypothetical protein phrog_16285 unknown function unknown function -1 37 336
YP_009281232.1 NC_031029_p70 hypothetical protein phrog_14206 unknown function unknown function 1 50620 50844
YP_009281170.1 NC_031029_p8 hypothetical protein phrog_12377 unknown function unknown function 1 2084 2368
YP_009281164.1 NC_031029_p2 hypothetical protein phrog_7155 unknown function unknown function -1 333 548
YP_009281290.1 NC_031029_p128 hypothetical protein phrog_13487 unknown function unknown function 1 75457 75819
YP_009281303.1 NC_031029_p141 hypothetical protein phrog_16413 unknown function unknown function 1 82086 82418
YP_009281231.1 NC_031029_p69 hypothetical protein phrog_11725 unknown function unknown function 1 50429 50623
YP_009281199.1 NC_031029_p37 hypothetical protein phrog_14494 unknown function unknown function 1 19982 20185
YP_009281335.1 NC_031029_p173 hypothetical protein phrog_15313 unknown function unknown function -1 91086 91433
YP_009281179.1 NC_031029_p17 hypothetical protein phrog_8206 unknown function unknown function 1 4917 5387
YP_009281246.1 NC_031029_p84 ssDNA binding protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 57344 58069
YP_009281337.1 NC_031029_p175 hypothetical protein phrog_14511 unknown function unknown function -1 91864 92397
YP_009281191.1 NC_031029_p29 major capsid protein phrog_29 major head protein head and packaging 1 15616 16644
YP_009281334.1 NC_031029_p172 hypothetical protein phrog_10850 unknown function unknown function -1 90787 91017
YP_009281225.1 NC_031029_p63 metallophosphatase phrog_547 phosphoesterase other 1 46325 47092
YP_009281226.1 NC_031029_p64 hypothetical protein phrog_8077 unknown function unknown function 1 47089 47601
YP_009281278.1 NC_031029_p116 hypothetical protein phrog_15557 unknown function unknown function 1 71748 72140
YP_009281217.1 NC_031029_p55 hypothetical protein phrog_13269 unknown function unknown function -1 42538 42984
YP_009281315.1 NC_031029_p153 hypothetical protein phrog_18847 unknown function unknown function -1 85459 85839
YP_009281207.1 NC_031029_p45 holin phrog_565 holin lysis 1 34200 34607
YP_009281308.1 NC_031029_p146 hypothetical protein phrog_13635 unknown function unknown function -1 83650 83991
YP_009281333.1 NC_031029_p171 hypothetical protein phrog_11344 unknown function unknown function -1 89877 90698
YP_009281239.1 NC_031029_p77 integrase phrog_1 integrase integration and excision 1 52630 53928
YP_009281270.1 NC_031029_p108 hypothetical protein phrog_14723 unknown function unknown function 1 67606 67851
YP_009281326.1 NC_031029_p164 hypothetical protein phrog_14483 unknown function unknown function -1 87914 88114
YP_009281272.1 NC_031029_p110 hypothetical protein phrog_5359 unknown function unknown function 1 68138 68905
YP_009281223.1 NC_031029_p61 hypothetical protein phrog_14204 unknown function unknown function 1 45314 46027
YP_009281274.1 NC_031029_p112 hypothetical protein phrog_15980 unknown function unknown function 1 69279 69401
YP_009281234.1 NC_031029_p72 hypothetical protein phrog_7382 unknown function unknown function 1 51062 51313
YP_009281283.1 NC_031029_p121 hypothetical protein phrog_10802 transcriptional regulator WhiB-like transcription regulation 1 73410 73694
YP_009281173.1 NC_031029_p11 hypothetical protein phrog_22196 unknown function unknown function 1 2874 3119
YP_009281307.1 NC_031029_p145 hypothetical protein phrog_18459 unknown function unknown function -1 83471 83653
YP_009281230.1 NC_031029_p68 hypothetical protein phrog_1843 unknown function unknown function 1 49742 50422
YP_009281243.1 NC_031029_p81 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 55149 56192
YP_009281215.1 NC_031029_p53 hypothetical protein phrog_9930 unknown function unknown function 1 41279 42208
YP_009281213.1 NC_031029_p51 minor tail protein phrog_10433 minor tail protein tail 1 38530 39249
YP_009281304.1 NC_031029_p142 hypothetical protein phrog_11980 unknown function unknown function -1 82402 82734
YP_009281286.1 NC_031029_p124 hypothetical protein phrog_12797 unknown function unknown function 1 74208 74420
YP_009281309.1 NC_031029_p147 hypothetical protein phrog_1173 unknown function unknown function -1 83988 84146
YP_009281193.1 NC_031029_p31 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 17055 17435
YP_009281201.1 NC_031029_p39 tail assembly chaperone phrog_11681 tail assembly chaperone tail 1 20219 20668
YP_009281305.1 NC_031029_p143 hypothetical protein phrog_12823 unknown function unknown function -1 82734 83087
YP_009281287.1 NC_031029_p125 hypothetical protein phrog_13511 unknown function unknown function 1 74428 74760
YP_009281175.1 NC_031029_p13 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3280 3588
YP_009281254.1 NC_031029_p92 hypothetical protein phrog_8743 unknown function unknown function 1 60907 61158
YP_009281210.1 NC_031029_p48 hypothetical protein phrog_3798 unknown function unknown function 1 35118 35573
YP_009281236.1 NC_031029_p74 hypothetical protein phrog_15512 unknown function unknown function 1 51476 51667
YP_009281289.1 NC_031029_p127 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism 1 75014 75451
YP_009281172.1 NC_031029_p10 hypothetical protein phrog_15810 unknown function unknown function 1 2710 2877
YP_009281325.1 NC_031029_p163 hypothetical protein phrog_3351 unknown function unknown function -1 87687 87917
YP_009281295.1 NC_031029_p133 hypothetical protein phrog_16561 ATPase other 1 78100 78306
YP_009281229.1 NC_031029_p67 hypothetical protein phrog_6641 secreted protein other 1 49303 49749
YP_009281208.1 NC_031029_p46 hypothetical protein phrog_4511 unknown function unknown function 1 34604 34906
YP_009281323.1 NC_031029_p161 hypothetical protein phrog_14095 unknown function unknown function -1 87353 87589
YP_009281255.1 NC_031029_p93 hypothetical protein phrog_15389 unknown function unknown function 1 61162 61353
YP_009281277.1 NC_031029_p115 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 70033 71664
YP_009281288.1 NC_031029_p126 hypothetical protein phrog_15025 unknown function unknown function 1 74764 75006
YP_009281329.1 NC_031029_p167 hypothetical protein phrog_3842 unknown function unknown function -1 88448 89071
YP_009281297.1 NC_031029_p135 5' nucleotidase phrog_420 unknown function unknown function 1 78660 79313
YP_009281271.1 NC_031029_p109 hypothetical protein phrog_15012 unknown function unknown function 1 67848 68141
YP_009281268.1 NC_031029_p106 hypothetical protein phrog_16055 unknown function unknown function 1 67051 67299
YP_009281327.1 NC_031029_p165 hypothetical protein phrog_9027 unknown function unknown function -1 88111 88326
YP_009281310.1 NC_031029_p148 hypothetical protein phrog_11149 unknown function unknown function -1 84133 84657
YP_009281169.1 NC_031029_p7 hypothetical protein phrog_4392 unknown function unknown function -1 1510 1779
YP_009281197.1 NC_031029_p35 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 18696 19154
YP_009281245.1 NC_031029_p83 hypothetical protein phrog_13065 unknown function unknown function 1 56827 57351
YP_009281206.1 NC_031029_p44 lysin A, L-Ala-D-Glu peptidase domain phrog_1512 endolysin lysis 1 33267 34193
YP_009281195.1 NC_031029_p33 hypothetical protein phrog_5210 neck protein connector 1 17792 18235
YP_009281192.1 NC_031029_p30 hypothetical protein phrog_15846 unknown function unknown function 1 16717 17055
YP_009281209.1 NC_031029_p47 hypothetical protein phrog_6071 unknown function unknown function 1 34903 35121
YP_009281276.1 NC_031029_p114 hypothetical protein phrog_14227 unknown function unknown function 1 69760 70032
YP_009281313.1 NC_031029_p151 hypothetical protein phrog_12664 unknown function unknown function -1 85029 85286
YP_009281321.1 NC_031029_p159 hypothetical protein phrog_7172 unknown function unknown function -1 86904 87155
YP_009281291.1 NC_031029_p129 hypothetical protein phrog_11731 unknown function unknown function 1 75820 76434
YP_009281182.1 NC_031029_p20 transposase phrog_157 transposase integration and excision 1 6824 7786
YP_009281203.1 NC_031029_p41 minor tail protein phrog_106 minor tail protein tail 1 30001 30882
YP_009281238.1 NC_031029_p76 hypothetical protein phrog_14817 unknown function unknown function 1 51963 52136
YP_009281240.1 NC_031029_p78 hypothetical protein phrog_15171 unknown function unknown function 1 54171 54371
YP_009281214.1 NC_031029_p52 hypothetical protein phrog_13892 minor tail protein tail 1 39249 41279
YP_009281180.1 NC_031029_p18 hypothetical protein phrog_8206 unknown function unknown function 1 5384 5827
YP_009281273.1 NC_031029_p111 DrpA-like ssDNA binding protein phrog_289 GTP-binding domain other 1 68902 69279
YP_009281251.1 NC_031029_p89 hypothetical protein phrog_13452 unknown function unknown function 1 59917 60450
YP_009281183.1 NC_031029_p21 hypothetical protein phrog_22764 unknown function unknown function 1 8429 8632
YP_009281262.1 NC_031029_p100 hypothetical protein phrog_17161 unknown function unknown function 1 64942 65286
YP_009281258.1 NC_031029_p96 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 62746 63735
YP_009281219.1 NC_031029_p57 exonuclease VII large subunit phrog_9454 exonuclease DNA, RNA and nucleotide metabolism 1 43553 44719
YP_009281247.1 NC_031029_p85 FAD-dependent thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 58066 58770
YP_009281186.1 NC_031029_p24 terminase large subunit phrog_9 terminase large subunit head and packaging 1 9972 11720
YP_009281314.1 NC_031029_p152 hypothetical protein phrog_16550 unknown function unknown function -1 85283 85462
YP_009281198.1 NC_031029_p36 major tail protein phrog_476 major tail protein tail 1 19203 19868
YP_009281224.1 NC_031029_p62 hypothetical protein phrog_14021 unknown function unknown function 1 46119 46328
YP_009281317.1 NC_031029_p155 hypothetical protein phrog_14253 unknown function unknown function -1 85990 86250