| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031031 |
Definition |
Gordonia phage Remus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus. |
DB of origin |
REFSEQ |
Length |
52738 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
98 |
%GC |
61.96 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009281690.1 | NC_031031_p76 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 43147 | 43320 |
| YP_009281672.1 | NC_031031_p58 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35812 | 36576 |
| YP_009281651.1 | NC_031031_p37 | hypothetical protein | phrog_25843 | unknown function | unknown function | -1 | 26135 | 26311 |
| YP_009281668.1 | NC_031031_p54 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 34599 | 34790 |
| YP_009281679.1 | NC_031031_p65 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38521 | 38685 |
| YP_009281619.1 | NC_031031_p5 | tail protein | phrog_226 | minor tail protein | tail | 1 | 2610 | 3065 |
| YP_009281652.1 | NC_031031_p38 | hypothetical protein | phrog_2142 | unknown function | unknown function | -1 | 26308 | 26628 |
| YP_009281642.1 | NC_031031_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 20929 | 21372 |
| YP_009281620.1 | NC_031031_p6 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 3082 | 3417 |
| YP_009281629.1 | NC_031031_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11256 | 12206 |
| YP_009281634.1 | NC_031031_p20 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13377 | 13745 |
| YP_009281623.1 | NC_031031_p9 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5360 | 6394 |
| YP_009281626.1 | NC_031031_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8341 | 9801 |
| YP_009281704.1 | NC_031031_p90 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 48369 | 48536 |
| YP_009281696.1 | NC_031031_p82 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 46008 | 46256 |
| YP_009281691.1 | NC_031031_p77 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 43331 | 43525 |
| YP_009281695.1 | NC_031031_p81 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45089 | 45610 |
| YP_009281654.1 | NC_031031_p40 | hypothetical protein | phrog_14604 | unknown function | unknown function | -1 | 27014 | 27148 |
| YP_009281618.1 | NC_031031_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2278 | 2574 |
| YP_009281700.1 | NC_031031_p86 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 47527 | 47808 |
| YP_009281706.1 | NC_031031_p92 | hypothetical protein | phrog_9204 | unknown function | unknown function | -1 | 48833 | 48961 |
| YP_009281685.1 | NC_031031_p71 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40419 | 40598 |
| YP_009281712.1 | NC_031031_p98 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 51021 | 51305 |
| YP_009281649.1 | NC_031031_p35 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25568 | 25807 |
| YP_009281656.1 | NC_031031_p42 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 27374 | 27622 |
| YP_009281677.1 | NC_031031_p63 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37652 | 38284 |
| YP_009281680.1 | NC_031031_p66 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 38685 | 39320 |
| YP_009281667.1 | NC_031031_p53 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32539 | 34602 |
| YP_009281657.1 | NC_031031_p43 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27622 | 27855 |
| YP_009281617.1 | NC_031031_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 1982 | 2281 |
| YP_009281698.1 | NC_031031_p84 | hypothetical protein | phrog_865 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46509 | 46685 |
| YP_009281631.1 | NC_031031_p17 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12451 | 12828 |
| YP_009281636.1 | NC_031031_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14193 | 14795 |
| YP_009281663.1 | NC_031031_p49 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30787 | 31485 |
| YP_009281660.1 | NC_031031_p46 | HTH DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30016 | 30309 |
| YP_009281701.1 | NC_031031_p87 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47811 | 47996 |
| YP_009281687.1 | NC_031031_p73 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41398 | 41877 |
| YP_009281683.1 | NC_031031_p69 | hypothetical protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39869 | 39967 |
| YP_009281628.1 | NC_031031_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10711 | 11223 |
| YP_009281675.1 | NC_031031_p61 | NrdH-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37177 | 37446 |
| YP_009281697.1 | NC_031031_p83 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 46240 | 46512 |
| YP_009281646.1 | NC_031031_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 23852 | 24160 |
| YP_009281703.1 | NC_031031_p89 | hypothetical protein | phrog_15584 | unknown function | unknown function | -1 | 48178 | 48366 |
| YP_009281648.1 | NC_031031_p34 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25232 | 25516 |
| YP_009281638.1 | NC_031031_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14909 | 15292 |
| YP_009281707.1 | NC_031031_p93 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 48958 | 49371 |
| YP_009281665.1 | NC_031031_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31914 | 32444 |
| YP_009281621.1 | NC_031031_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3414 | 4406 |
| YP_009281659.1 | NC_031031_p45 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29660 | 30019 |
| YP_009281682.1 | NC_031031_p68 | hypothetical protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39759 | 39872 |
| YP_009281653.1 | NC_031031_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26625 | 27014 |
| YP_009281710.1 | NC_031031_p96 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 50602 | 50832 |
| YP_009281650.1 | NC_031031_p36 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25792 | 25986 |
| YP_009281666.1 | NC_031031_p52 | hypothetical protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 32441 | 32554 |
| YP_009281644.1 | NC_031031_p30 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21707 | 23419 |
| YP_009281699.1 | NC_031031_p85 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 46695 | 47411 |
| YP_009281658.1 | NC_031031_p44 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27869 | 29659 |
| YP_009281643.1 | NC_031031_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21369 | 21710 |
| YP_009281693.1 | NC_031031_p79 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43827 | 44678 |
| YP_009281664.1 | NC_031031_p50 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31482 | 31826 |
| YP_009281662.1 | NC_031031_p48 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 30533 | 30778 |
| YP_009281624.1 | NC_031031_p10 | holin | phrog_13682 | holin | lysis | 1 | 6404 | 6631 |
| YP_009281632.1 | NC_031031_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12825 | 13022 |
| YP_009281647.1 | NC_031031_p33 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24643 | 25209 |
| YP_009281627.1 | NC_031031_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9798 | 10658 |
| YP_009281639.1 | NC_031031_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15884 | 18073 |
| YP_009281645.1 | NC_031031_p31 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23409 | 23855 |
| YP_009281616.1 | NC_031031_p2 | ADP-ribosyltransferase | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1098 | 1985 |
| YP_009281640.1 | NC_031031_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18083 | 19060 |
| YP_009281705.1 | NC_031031_p91 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48591 | 48833 |
| YP_009281671.1 | NC_031031_p57 | HTH DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35114 | 35686 |
| YP_009281673.1 | NC_031031_p59 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36573 | 37007 |
| YP_009281686.1 | NC_031031_p72 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40601 | 41365 |
| YP_009281615.1 | NC_031031_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 430 | 1260 |
| YP_009281708.1 | NC_031031_p94 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 49402 | 50130 |
| YP_009281678.1 | NC_031031_p64 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38115 | 38495 |
| YP_009281655.1 | NC_031031_p41 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 27148 | 27381 |
| YP_009281669.1 | NC_031031_p55 | hypothetical protein | phrog_37922 | unknown function | unknown function | -1 | 34787 | 34948 |
| YP_009281709.1 | NC_031031_p95 | hypothetical protein | phrog_6351 | unknown function | unknown function | -1 | 50213 | 50599 |
| YP_009281622.1 | NC_031031_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4403 | 5071 |
| YP_009281692.1 | NC_031031_p78 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43522 | 43800 |
| YP_009281702.1 | NC_031031_p88 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 47996 | 48166 |
| YP_009281625.1 | NC_031031_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6647 | 8344 |
| YP_009281681.1 | NC_031031_p67 | endonuclease VII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39317 | 39685 |
| YP_009281630.1 | NC_031031_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12277 | 12447 |
| YP_009281661.1 | NC_031031_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30306 | 30533 |
| YP_009281670.1 | NC_031031_p56 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34948 | 35130 |
| YP_009281688.1 | NC_031031_p74 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41920 | 42663 |
| YP_009281674.1 | NC_031031_p60 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 37004 | 37180 |
| YP_009281684.1 | NC_031031_p70 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40010 | 40408 |
| YP_009281694.1 | NC_031031_p80 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44675 | 45073 |
| YP_009281676.1 | NC_031031_p62 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37443 | 37655 |
| YP_009281633.1 | NC_031031_p19 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 13009 | 13377 |
| YP_009281637.1 | NC_031031_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14909 | 15813 |
| YP_009281689.1 | NC_031031_p75 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 42730 | 43125 |
| YP_009281641.1 | NC_031031_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19057 | 20844 |
| YP_009281711.1 | NC_031031_p97 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 50835 | 51017 |
| YP_009281635.1 | NC_031031_p21 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 13758 | 14168 |