| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031036 |
Definition |
Lactobacillus phage PLE2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
35068 |
Host Name |
Lactobacillus casei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
45.32 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009282357.1 | NC_031036_p16 | distal tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 11514 | 12209 |
| YP_009282372.1 | NC_031036_p31 | hypothetical protein | phrog_373 | anti-repressor | transcription regulation | 1 | 24427 | 25200 |
| YP_009282351.1 | NC_031036_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6591 | 6974 |
| YP_009282382.1 | NC_031036_p41 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 28749 | 29489 |
| YP_009282356.1 | NC_031036_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8337 | 11507 |
| YP_009282359.1 | NC_031036_p18 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 16587 | 17063 |
| YP_009282347.1 | NC_031036_p6 | hypothetical protein | phrog_1696 | major tail protein | tail | 1 | 5423 | 5671 |
| YP_009282366.1 | NC_031036_p25 | hypothetical protein | phrog_7805 | unknown function | unknown function | -1 | 21111 | 21872 |
| YP_009282344.1 | NC_031036_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2195 | 3430 |
| YP_009282376.1 | NC_031036_p35 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 25823 | 26134 |
| YP_009282392.1 | NC_031036_p51 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34688 | 35068 |
| YP_009282363.1 | NC_031036_p22 | holin | phrog_2609 | holin | lysis | 1 | 17953 | 18414 |
| YP_009282345.1 | NC_031036_p4 | capsid maduration protease | phrog_94 | head maturation protease | head and packaging | 1 | 3408 | 4115 |
| YP_009282368.1 | NC_031036_p27 | hypothetical protein | phrog_7872 | unknown function | unknown function | -1 | 22377 | 23156 |
| YP_009282378.1 | NC_031036_p37 | hypothetical protein | phrog_17254 | unknown function | unknown function | 1 | 26400 | 26639 |
| YP_009282384.1 | NC_031036_p43 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 30068 | 30865 |
| YP_009282364.1 | NC_031036_p23 | lysin | phrog_3393 | endolysin | lysis | 1 | 18416 | 19468 |
| YP_009282350.1 | NC_031036_p9 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6272 | 6601 |
| YP_009282360.1 | NC_031036_p19 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 17066 | 17335 |
| YP_009282346.1 | NC_031036_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4120 | 5349 |
| YP_009282390.1 | NC_031036_p49 | hypothetical protein | phrog_17171 | unknown function | unknown function | 1 | 33868 | 34122 |
| YP_009282353.1 | NC_031036_p12 | major tail S protein | phrog_88 | major tail protein | tail | 1 | 6986 | 7633 |
| YP_009282383.1 | NC_031036_p42 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29492 | 30001 |
| YP_009282385.1 | NC_031036_p44 | helicase | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 30855 | 32105 |
| YP_009282391.1 | NC_031036_p50 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 34119 | 34523 |
| YP_009282380.1 | NC_031036_p39 | hypothetical protein | phrog_5118 | unknown function | unknown function | 1 | 27150 | 27380 |
| YP_009282386.1 | NC_031036_p45 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32380 | 32694 |
| YP_009282358.1 | NC_031036_p17 | tail associated lysozyme | phrog_1330 | tail protein | tail | 1 | 12206 | 16609 |
| YP_009282342.1 | NC_031036_p1 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 57 | 443 |
| YP_009282387.1 | NC_031036_p46 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 32701 | 32985 |
| YP_009282375.1 | NC_031036_p34 | hypothetical protein | phrog_3882 | unknown function | unknown function | 1 | 25700 | 25834 |
| YP_009282354.1 | NC_031036_p13 | tail assembly chaperone | phrog_4888 | tail assembly chaperone | tail | 1 | 7710 | 8317 |
| YP_009282388.1 | NC_031036_p47 | hypothetical protein | phrog_13069 | unknown function | unknown function | 1 | 32972 | 33301 |
| YP_009282379.1 | NC_031036_p38 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 26644 | 27138 |
| YP_009282349.1 | NC_031036_p8 | head-tail joining protein | phrog_4014 | head-tail adaptor | connector | 1 | 6001 | 6288 |
| YP_009282369.1 | NC_031036_p28 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 23228 | 23632 |
| YP_009282389.1 | NC_031036_p48 | hypothetical protein | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33294 | 33881 |
| YP_009282361.1 | NC_031036_p20 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 17383 | 17769 |
| YP_009282352.1 | NC_031036_p11 | major tail L protein | phrog_88 | major tail protein | tail | 1 | 6986 | 7695 |
| YP_009282370.1 | NC_031036_p29 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 23629 | 23955 |
| YP_009282362.1 | NC_031036_p21 | hypothetical protein | phrog_3671 | unknown function | unknown function | 1 | 17750 | 17956 |
| YP_009282365.1 | NC_031036_p24 | integrase | phrog_1 | integrase | integration and excision | -1 | 19849 | 21000 |
| YP_009282343.1 | NC_031036_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 446 | 2176 |
| YP_009282367.1 | NC_031036_p26 | hypothetical protein | phrog_9771 | unknown function | unknown function | 1 | 21891 | 22121 |
| YP_009282373.1 | NC_031036_p32 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 25232 | 25555 |
| YP_009282355.1 | NC_031036_p14 | tail assembly chaperone | phrog_4888 | tail assembly chaperone | tail | 1 | 7710 | 8075 |
| YP_009282348.1 | NC_031036_p7 | hypothetical protein | phrog_4609 | unknown function | unknown function | 1 | 5685 | 6011 |
| YP_009282377.1 | NC_031036_p36 | hypothetical protein | phrog_5144 | unknown function | unknown function | 1 | 26195 | 26386 |
| YP_009282374.1 | NC_031036_p33 | hypothetical protein | phrog_7103 | unknown function | unknown function | 1 | 25555 | 25686 |
| YP_009282381.1 | NC_031036_p40 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 27380 | 28747 |
| YP_009282371.1 | NC_031036_p30 | hypothetical protein | phrog_21847 | unknown function | unknown function | 1 | 24212 | 24424 |