| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031040 |
Definition |
Lactococcus phage 50101, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
31987 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
35.61 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009283198.1 | NC_031040_p2 | Sie protein | phrog_8545 | superinfection exclusion Sie-like | moron, auxiliary metabolic gene and host takeover | -1 | 1246 | 1767 |
| YP_009283216.1 | NC_031040_p20 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 10663 | 11082 |
| YP_009283213.1 | NC_031040_p17 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 9055 | 9648 |
| YP_009283210.1 | NC_031040_p14 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8130 | 8531 |
| YP_009283245.1 | NC_031040_p49 | lysin | phrog_291 | endolysin | lysis | 1 | 29225 | 30514 |
| YP_009283202.1 | NC_031040_p6 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 3373 | 4083 |
| YP_009283227.1 | NC_031040_p31 | hypothetical protein | phrog_2494 | minor head protein | head and packaging | 1 | 15578 | 16342 |
| YP_009283217.1 | NC_031040_p21 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11101 | 11631 |
| YP_009283219.1 | NC_031040_p23 | hypothetical protein | phrog_1083 | unknown function | unknown function | 1 | 11872 | 12210 |
| YP_009283233.1 | NC_031040_p37 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 19931 | 20278 |
| YP_009283212.1 | NC_031040_p16 | hypothetical protein | phrog_4314 | unknown function | unknown function | 1 | 8886 | 9062 |
| YP_009283205.1 | NC_031040_p9 | transcriptional regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 4675 | 4848 |
| YP_009283226.1 | NC_031040_p30 | hypothetical protein | phrog_25292 | unknown function | unknown function | 1 | 15406 | 15564 |
| YP_009283231.1 | NC_031040_p35 | hypothetical protein | phrog_1539 | Arc-like repressor | transcription regulation | 1 | 19254 | 19553 |
| YP_009283247.1 | NC_031040_p51 | hypothetical protein | phrog_11039 | unknown function | unknown function | 1 | 31513 | 31767 |
| YP_009283218.1 | NC_031040_p22 | transcription factor | phrog_22202 | transcription factor | transcription regulation | 1 | 11609 | 11875 |
| YP_009283237.1 | NC_031040_p41 | hypothetical protein | phrog_1526 | unknown function | unknown function | 1 | 21489 | 21749 |
| YP_009283244.1 | NC_031040_p48 | holin | phrog_297 | holin | lysis | 1 | 28962 | 29228 |
| YP_009283241.1 | NC_031040_p45 | tail-associated lysin | phrog_538 | minor tail protein | tail | 1 | 25583 | 26740 |
| YP_009283229.1 | NC_031040_p33 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 17875 | 18339 |
| YP_009283228.1 | NC_031040_p32 | large terminase subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 16393 | 17802 |
| YP_009283230.1 | NC_031040_p34 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 18343 | 19239 |
| YP_009283238.1 | NC_031040_p42 | hypothetical protein | phrog_1633 | unknown function | unknown function | 1 | 21764 | 22138 |
| YP_009283225.1 | NC_031040_p29 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 14180 | 15409 |
| YP_009283239.1 | NC_031040_p43 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 22138 | 24669 |
| YP_009283224.1 | NC_031040_p28 | hypothetical protein | phrog_26495 | unknown function | unknown function | 1 | 14023 | 14187 |
| YP_009283215.1 | NC_031040_p19 | hypothetical protein | phrog_6648 | unknown function | unknown function | 1 | 10271 | 10666 |
| YP_009283243.1 | NC_031040_p47 | neck passage structure | phrog_16048 | virion structural protein | head and packaging | 1 | 27828 | 28937 |
| YP_009283199.1 | NC_031040_p3 | Cl-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 1828 | 2688 |
| YP_009283234.1 | NC_031040_p38 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 20271 | 20507 |
| YP_009283203.1 | NC_031040_p7 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 4096 | 4428 |
| YP_009283204.1 | NC_031040_p8 | hypothetical protein | phrog_5257 | unknown function | unknown function | 1 | 4430 | 4678 |
| YP_009283232.1 | NC_031040_p36 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 19555 | 19953 |
| YP_009283197.1 | NC_031040_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 1125 |
| YP_009283206.1 | NC_031040_p10 | recombinase protein | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4949 | 5686 |
| YP_009283200.1 | NC_031040_p4 | repressor | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 2917 | 3108 |
| YP_009283246.1 | NC_031040_p50 | hypothetical protein | phrog_31950 | unknown function | unknown function | 1 | 30915 | 31496 |
| YP_009283211.1 | NC_031040_p15 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 8535 | 8774 |
| YP_009283236.1 | NC_031040_p40 | major tail protein | phrog_117 | major tail protein | tail | 1 | 20854 | 21411 |
| YP_009283221.1 | NC_031040_p25 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 12524 | 13060 |
| YP_009283214.1 | NC_031040_p18 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 9702 | 10274 |
| YP_009283208.1 | NC_031040_p12 | replicase protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7018 | 7896 |
| YP_009283235.1 | NC_031040_p39 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 20508 | 20843 |
| YP_009283207.1 | NC_031040_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 5688 | 6728 |
| YP_009283222.1 | NC_031040_p26 | transcriptional activator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 13144 | 13575 |
| YP_009283220.1 | NC_031040_p24 | hypothetical protein | phrog_11381 | unknown function | unknown function | 1 | 12207 | 12527 |
| YP_009283209.1 | NC_031040_p13 | hypothetical protein | phrog_7699 | unknown function | unknown function | 1 | 7880 | 8137 |
| YP_009283240.1 | NC_031040_p44 | distal tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 24682 | 25578 |
| YP_009283223.1 | NC_031040_p27 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13701 | 14033 |
| YP_009283201.1 | NC_031040_p5 | Cro/Cl-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3129 | 3359 |
| YP_009283242.1 | NC_031040_p46 | receptor binding protein | phrog_1220 | head protein | head and packaging | 1 | 26737 | 27768 |