Genomic map of Mycobacterium phage Papez (NC_031041)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031041
Definition
Mycobacterium phage Papez, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52501
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.78
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009283325.1 NC_031041_p78 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47696 47995
YP_009283328.1 NC_031041_p81 hypothetical protein phrog_6510 unknown function unknown function -1 48419 48601
YP_009283305.1 NC_031041_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 40952 41467
YP_009283256.1 NC_031041_p9 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5271 5849
YP_009283319.1 NC_031041_p72 hypothetical protein phrog_5961 unknown function unknown function -1 44848 45006
YP_009283302.1 NC_031041_p55 hypothetical protein phrog_1503 unknown function unknown function -1 39855 40025
YP_009283281.1 NC_031041_p34 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 27655 29139
YP_009283321.1 NC_031041_p74 hypothetical protein phrog_1584 unknown function unknown function -1 45851 46177
YP_009283339.1 NC_031041_p92 hypothetical protein phrog_2212 unknown function unknown function -1 51143 51226
YP_009283289.1 NC_031041_p42 hypothetical protein phrog_2035 unknown function unknown function -1 33383 33553
YP_009283255.1 NC_031041_p8 hypothetical protein phrog_747 unknown function unknown function 1 5014 5271
YP_009283280.1 NC_031041_p33 minor tail protein phrog_346 minor tail protein tail 1 25809 27662
YP_009283263.1 NC_031041_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12506 13018
YP_009283279.1 NC_031041_p32 hypothetical protein phrog_1397 unknown function unknown function 1 25437 25784
YP_009283338.1 NC_031041_p91 hypothetical protein phrog_363 DNA methyltransferase other -1 50632 51123
YP_009283335.1 NC_031041_p88 hypothetical protein phrog_932 unknown function unknown function -1 49790 49942
YP_009283273.1 NC_031041_p26 tape measure phrog_305 tail length tape measure protein tail 1 18048 20528
YP_009283301.1 NC_031041_p54 hypothetical protein phrog_221 metallo-phosphoesterase other -1 39091 39858
YP_009283322.1 NC_031041_p75 hypothetical protein phrog_3851 unknown function unknown function -1 46198 46488
YP_009283254.1 NC_031041_p7 hypothetical protein phrog_8174 minor tail protein tail 1 4150 5001
YP_009283249.1 NC_031041_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 785 1129
YP_009283341.1 NC_031041_p94 hypothetical protein phrog_4006 unknown function unknown function -1 51582 52148
YP_009283260.1 NC_031041_p13 terminase large subunit phrog_9 terminase large subunit head and packaging 1 8442 10130
YP_009283251.1 NC_031041_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1712 2023
YP_009283248.1 NC_031041_p1 hypothetical protein phrog_13643 helicase DNA, RNA and nucleotide metabolism 1 600 836
YP_009283323.1 NC_031041_p76 hypothetical protein phrog_1809 unknown function unknown function -1 46485 46889
YP_009283257.1 NC_031041_p10 lysin A phrog_317 endolysin lysis 1 5846 7264
YP_009283330.1 NC_031041_p83 hypothetical protein phrog_1387 unknown function unknown function -1 48687 48887
YP_009283300.1 NC_031041_p53 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 38946 39086
YP_009283309.1 NC_031041_p62 hypothetical protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41809 42285
YP_009283266.1 NC_031041_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14600 15049
YP_009283271.1 NC_031041_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 17237 18036
YP_009283284.1 NC_031041_p37 hypothetical protein phrog_754 minor tail protein tail 1 29749 30537
YP_009283331.1 NC_031041_p84 hypothetical protein phrog_1155 unknown function unknown function -1 48884 49072
YP_009283297.1 NC_031041_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 37492 37983
YP_009283285.1 NC_031041_p38 hypothetical protein phrog_411 unknown function unknown function 1 30658 30954
YP_009283303.1 NC_031041_p56 hypothetical protein phrog_1167 phosphofructokinase other -1 40022 40588
YP_009283326.1 NC_031041_p79 hypothetical protein phrog_1720 unknown function unknown function -1 47992 48159
YP_009283316.1 NC_031041_p69 hypothetical protein phrog_2184 unknown function unknown function -1 44024 44344
YP_009283250.1 NC_031041_p3 terminase small subunit phrog_226 minor tail protein tail 1 1164 1598
YP_009283295.1 NC_031041_p48 hypothetical protein phrog_6173 unknown function unknown function -1 36992 37234
YP_009283332.1 NC_031041_p85 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49072 49239
YP_009283269.1 NC_031041_p22 hypothetical protein phrog_123 tail terminator connector 1 15810 16256
YP_009283310.1 NC_031041_p63 endonuclease VII phrog_1019 unknown function unknown function -1 42272 42358
YP_009283327.1 NC_031041_p80 hypothetical protein phrog_26170 unknown function unknown function -1 48255 48422
YP_009283315.1 NC_031041_p68 hypothetical protein phrog_520 unknown function unknown function -1 43731 44027
YP_009283304.1 NC_031041_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 40585 41106
YP_009283307.1 NC_031041_p60 hypothetical protein phrog_5801 unknown function unknown function -1 41604 41681
YP_009283258.1 NC_031041_p11 hypothetical protein phrog_774 unknown function unknown function 1 7261 7464
YP_009283276.1 NC_031041_p29 minor tail protein phrog_110 minor tail protein tail 1 22831 24612
YP_009283253.1 NC_031041_p6 hypothetical protein phrog_553 minor tail protein tail 1 3435 4136
YP_009283265.1 NC_031041_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 14127 14600
YP_009283287.1 NC_031041_p40 hypothetical protein phrog_1966 unknown function unknown function -1 32731 33003
YP_009283311.1 NC_031041_p64 NrdH glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42355 42624
YP_009283333.1 NC_031041_p86 hypothetical protein phrog_2093 unknown function unknown function -1 49236 49364
YP_009283267.1 NC_031041_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 15049 15411
YP_009283337.1 NC_031041_p90 hypothetical protein singleton unknown function unknown function -1 50439 50627
YP_009283324.1 NC_031041_p77 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46922 47434
YP_009283294.1 NC_031041_p47 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 35152 36969
YP_009283336.1 NC_031041_p89 hypothetical protein phrog_7647 unknown function unknown function -1 49939 50166
YP_009283259.1 NC_031041_p12 lysin B phrog_102 endolysin lysis 1 7454 8422
YP_009283264.1 NC_031041_p17 major capsid protein phrog_10 major head protein head and packaging 1 13029 14048
YP_009283275.1 NC_031041_p28 hypothetical protein phrog_1543 minor tail protein tail 1 22628 22810
YP_009283317.1 NC_031041_p70 hypothetical protein phrog_30883 unknown function unknown function -1 44422 44622
YP_009283340.1 NC_031041_p93 hypothetical protein phrog_828 unknown function unknown function -1 51337 51585
YP_009283291.1 NC_031041_p44 hypothetical protein phrog_1971 unknown function unknown function -1 33642 33929
YP_009283288.1 NC_031041_p41 hypothetical protein phrog_2387 nucleotide kinase other -1 33000 33386
YP_009283252.1 NC_031041_p5 hypothetical protein phrog_1197 tail protein tail 1 2355 3425
YP_009283292.1 NC_031041_p45 hypothetical protein phrog_383 unknown function unknown function -1 33926 34288
YP_009283277.1 NC_031041_p30 hypothetical protein phrog_352 minor tail protein tail 1 24650 25096
YP_009283274.1 NC_031041_p27 minor tail protein phrog_106 minor tail protein tail 1 20552 22609
YP_009283268.1 NC_031041_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15411 15806
YP_009283329.1 NC_031041_p82 hypothetical protein phrog_28275 unknown function unknown function -1 48598 48690
YP_009283283.1 NC_031041_p36 hypothetical protein phrog_1560 unknown function unknown function 1 29579 29749
YP_009283334.1 NC_031041_p87 hypothetical protein phrog_2974 unknown function unknown function -1 49543 49764
YP_009283312.1 NC_031041_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42621 43442
YP_009283278.1 NC_031041_p31 hypothetical protein phrog_981 minor tail protein tail 1 25108 25440
YP_009283320.1 NC_031041_p73 RecB exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 45034 45858
YP_009283308.1 NC_031041_p61 hypothetical protein phrog_397 unknown function unknown function -1 41678 41812
YP_009283272.1 NC_031041_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 17237 17614
YP_009283298.1 NC_031041_p51 hypothetical protein phrog_499 unknown function unknown function -1 37980 38165
YP_009283286.1 NC_031041_p39 integrase phrog_95 integrase integration and excision 1 31106 32608
YP_009283306.1 NC_031041_p59 hypothetical protein phrog_1783 unknown function unknown function -1 41446 41607
YP_009283318.1 NC_031041_p71 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44663 44851
YP_009283314.1 NC_031041_p67 hypothetical protein phrog_1705 unknown function unknown function -1 43612 43734
YP_009283293.1 NC_031041_p46 DNA methylase phrog_116 DNA methyltransferase other -1 34302 35129
YP_009283290.1 NC_031041_p43 hypothetical protein phrog_1860 unknown function unknown function -1 33550 33696
YP_009283270.1 NC_031041_p23 major tail protein phrog_117 major tail protein tail 1 16265 17116
YP_009283261.1 NC_031041_p14 portal protein phrog_104 portal protein head and packaging 1 10127 11569
YP_009283299.1 NC_031041_p52 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 38162 38953
YP_009283282.1 NC_031041_p35 hypothetical protein phrog_644 unknown function unknown function 1 29148 29549
YP_009283296.1 NC_031041_p49 hypothetical protein phrog_1781 unknown function unknown function -1 37231 37461
YP_009283262.1 NC_031041_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11566 12447
YP_009283313.1 NC_031041_p66 hypothetical protein phrog_2507 unknown function unknown function -1 43442 43615