functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_031041 |
Definition |
Mycobacterium phage Papez, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52501 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.78 |
Number of singletons |
1 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_009283325.1 | NC_031041_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47696 | 47995 |
YP_009283328.1 | NC_031041_p81 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 48419 | 48601 |
YP_009283305.1 | NC_031041_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40952 | 41467 |
YP_009283256.1 | NC_031041_p9 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5271 | 5849 |
YP_009283319.1 | NC_031041_p72 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 44848 | 45006 |
YP_009283302.1 | NC_031041_p55 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 39855 | 40025 |
YP_009283281.1 | NC_031041_p34 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 27655 | 29139 |
YP_009283321.1 | NC_031041_p74 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45851 | 46177 |
YP_009283339.1 | NC_031041_p92 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51143 | 51226 |
YP_009283289.1 | NC_031041_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 33383 | 33553 |
YP_009283255.1 | NC_031041_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 5014 | 5271 |
YP_009283280.1 | NC_031041_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25809 | 27662 |
YP_009283263.1 | NC_031041_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12506 | 13018 |
YP_009283279.1 | NC_031041_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 25437 | 25784 |
YP_009283338.1 | NC_031041_p91 | hypothetical protein | phrog_363 | DNA methyltransferase | other | -1 | 50632 | 51123 |
YP_009283335.1 | NC_031041_p88 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49790 | 49942 |
YP_009283273.1 | NC_031041_p26 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 18048 | 20528 |
YP_009283301.1 | NC_031041_p54 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 39091 | 39858 |
YP_009283322.1 | NC_031041_p75 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 46198 | 46488 |
YP_009283254.1 | NC_031041_p7 | hypothetical protein | phrog_8174 | minor tail protein | tail | 1 | 4150 | 5001 |
YP_009283249.1 | NC_031041_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 785 | 1129 |
YP_009283341.1 | NC_031041_p94 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 51582 | 52148 |
YP_009283260.1 | NC_031041_p13 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 8442 | 10130 |
YP_009283251.1 | NC_031041_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1712 | 2023 |
YP_009283248.1 | NC_031041_p1 | hypothetical protein | phrog_13643 | helicase | DNA, RNA and nucleotide metabolism | 1 | 600 | 836 |
YP_009283323.1 | NC_031041_p76 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46485 | 46889 |
YP_009283257.1 | NC_031041_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5846 | 7264 |
YP_009283330.1 | NC_031041_p83 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48687 | 48887 |
YP_009283300.1 | NC_031041_p53 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 38946 | 39086 |
YP_009283309.1 | NC_031041_p62 | hypothetical protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41809 | 42285 |
YP_009283266.1 | NC_031041_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14600 | 15049 |
YP_009283271.1 | NC_031041_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 17237 | 18036 |
YP_009283284.1 | NC_031041_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 29749 | 30537 |
YP_009283331.1 | NC_031041_p84 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48884 | 49072 |
YP_009283297.1 | NC_031041_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 37492 | 37983 |
YP_009283285.1 | NC_031041_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 30658 | 30954 |
YP_009283303.1 | NC_031041_p56 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 40022 | 40588 |
YP_009283326.1 | NC_031041_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47992 | 48159 |
YP_009283316.1 | NC_031041_p69 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44024 | 44344 |
YP_009283250.1 | NC_031041_p3 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1164 | 1598 |
YP_009283295.1 | NC_031041_p48 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 36992 | 37234 |
YP_009283332.1 | NC_031041_p85 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49072 | 49239 |
YP_009283269.1 | NC_031041_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15810 | 16256 |
YP_009283310.1 | NC_031041_p63 | endonuclease VII | phrog_1019 | unknown function | unknown function | -1 | 42272 | 42358 |
YP_009283327.1 | NC_031041_p80 | hypothetical protein | phrog_26170 | unknown function | unknown function | -1 | 48255 | 48422 |
YP_009283315.1 | NC_031041_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43731 | 44027 |
YP_009283304.1 | NC_031041_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40585 | 41106 |
YP_009283307.1 | NC_031041_p60 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 41604 | 41681 |
YP_009283258.1 | NC_031041_p11 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 7261 | 7464 |
YP_009283276.1 | NC_031041_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22831 | 24612 |
YP_009283253.1 | NC_031041_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3435 | 4136 |
YP_009283265.1 | NC_031041_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 14127 | 14600 |
YP_009283287.1 | NC_031041_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 32731 | 33003 |
YP_009283311.1 | NC_031041_p64 | NrdH glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42355 | 42624 |
YP_009283333.1 | NC_031041_p86 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49236 | 49364 |
YP_009283267.1 | NC_031041_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 15049 | 15411 |
YP_009283337.1 | NC_031041_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50439 | 50627 |
YP_009283324.1 | NC_031041_p77 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46922 | 47434 |
YP_009283294.1 | NC_031041_p47 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 35152 | 36969 |
YP_009283336.1 | NC_031041_p89 | hypothetical protein | phrog_7647 | unknown function | unknown function | -1 | 49939 | 50166 |
YP_009283259.1 | NC_031041_p12 | lysin B | phrog_102 | endolysin | lysis | 1 | 7454 | 8422 |
YP_009283264.1 | NC_031041_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 13029 | 14048 |
YP_009283275.1 | NC_031041_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 22628 | 22810 |
YP_009283317.1 | NC_031041_p70 | hypothetical protein | phrog_30883 | unknown function | unknown function | -1 | 44422 | 44622 |
YP_009283340.1 | NC_031041_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51337 | 51585 |
YP_009283291.1 | NC_031041_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 33642 | 33929 |
YP_009283288.1 | NC_031041_p41 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 33000 | 33386 |
YP_009283252.1 | NC_031041_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2355 | 3425 |
YP_009283292.1 | NC_031041_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33926 | 34288 |
YP_009283277.1 | NC_031041_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24650 | 25096 |
YP_009283274.1 | NC_031041_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20552 | 22609 |
YP_009283268.1 | NC_031041_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15411 | 15806 |
YP_009283329.1 | NC_031041_p82 | hypothetical protein | phrog_28275 | unknown function | unknown function | -1 | 48598 | 48690 |
YP_009283283.1 | NC_031041_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 29579 | 29749 |
YP_009283334.1 | NC_031041_p87 | hypothetical protein | phrog_2974 | unknown function | unknown function | -1 | 49543 | 49764 |
YP_009283312.1 | NC_031041_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42621 | 43442 |
YP_009283278.1 | NC_031041_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 25108 | 25440 |
YP_009283320.1 | NC_031041_p73 | RecB exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45034 | 45858 |
YP_009283308.1 | NC_031041_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41678 | 41812 |
YP_009283272.1 | NC_031041_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 17237 | 17614 |
YP_009283298.1 | NC_031041_p51 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37980 | 38165 |
YP_009283286.1 | NC_031041_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 31106 | 32608 |
YP_009283306.1 | NC_031041_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 41446 | 41607 |
YP_009283318.1 | NC_031041_p71 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44663 | 44851 |
YP_009283314.1 | NC_031041_p67 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43612 | 43734 |
YP_009283293.1 | NC_031041_p46 | DNA methylase | phrog_116 | DNA methyltransferase | other | -1 | 34302 | 35129 |
YP_009283290.1 | NC_031041_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 33550 | 33696 |
YP_009283270.1 | NC_031041_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 16265 | 17116 |
YP_009283261.1 | NC_031041_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 10127 | 11569 |
YP_009283299.1 | NC_031041_p52 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 38162 | 38953 |
YP_009283282.1 | NC_031041_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 29148 | 29549 |
YP_009283296.1 | NC_031041_p49 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 37231 | 37461 |
YP_009283262.1 | NC_031041_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11566 | 12447 |
YP_009283313.1 | NC_031041_p66 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43442 | 43615 |