Genomic map of Salmonella phage NR01 (NC_031042)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031042
Definition
Salmonella phage NR01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; Salmonella virus NR01.
DB of origin
REFSEQ
Length
111325
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
148
%GC
38.83
Number of singletons
3
Number of paralogs
16

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009283384.1 NC_031042_p43 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 31781 32191
YP_009283418.1 NC_031042_p77 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 69557 70324
YP_009283410.1 NC_031042_p69 tail protein phrog_3890 straight fibre tail protein tail -1 56503 58575
YP_009283444.1 NC_031042_p103 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 89470 89682
YP_009283457.1 NC_031042_p116 hypothetical protein phrog_4215 unknown function unknown function -1 95970 96431
YP_009283374.1 NC_031042_p33 hypothetical protein phrog_5236 unknown function unknown function 1 24344 24547
YP_009283368.1 NC_031042_p27 aerobic ribonucleoside diphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 17693 20023
YP_009283367.1 NC_031042_p26 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 17076 17591
YP_009283432.1 NC_031042_p91 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 81133 81669
YP_009283406.1 NC_031042_p65 hypothetical protein phrog_5592 unknown function unknown function 1 50292 50558
YP_009283354.1 NC_031042_p13 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 8919 9383
YP_009283448.1 NC_031042_p107 hypothetical protein phrog_32079 unknown function unknown function 1 91787 91939
YP_009283476.1 NC_031042_p135 o-spanin phrog_812 Rz-like spanin lysis -1 105160 105513
YP_009283438.1 NC_031042_p97 hypothetical protein phrog_3747 unknown function unknown function -1 85643 85894
YP_009283447.1 NC_031042_p106 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 91044 91583
YP_009283363.1 NC_031042_p22 hypothetical protein phrog_26840 unknown function unknown function -1 14068 14451
YP_009283430.1 NC_031042_p89 receptor blocking protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 80244 80510
YP_009283402.1 NC_031042_p61 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 46687 48525
YP_009283451.1 NC_031042_p110 hypothetical protein phrog_5271 unknown function unknown function -1 93642 94256
YP_009283470.1 NC_031042_p129 hypothetical protein phrog_4328 unknown function unknown function -1 101600 102004
YP_009283352.1 NC_031042_p11 hypothetical protein phrog_5077 unknown function unknown function -1 8239 8409
YP_009283388.1 NC_031042_p47 hypothetical protein phrog_8267 unknown function unknown function 1 33568 33756
YP_009283466.1 NC_031042_p125 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 99571 100434
YP_009283424.1 NC_031042_p83 portal protein phrog_12 portal protein head and packaging -1 74072 75289
YP_009283351.1 NC_031042_p10 Yqey protein domain-containing protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 7796 8239
YP_009283357.1 NC_031042_p16 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 11093 11794
YP_009283359.1 NC_031042_p18 hypothetical protein phrog_4516 unknown function unknown function -1 12101 12616
YP_009283475.1 NC_031042_p134 deoxynucleoside-5'-monophosphatate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 104408 105160
YP_009283465.1 NC_031042_p124 serine/threonine protein phosphatase phrog_547 phosphoesterase other -1 99050 99541
YP_009283353.1 NC_031042_p12 spore cortex-lytic enzyme precursor phrog_938 endolysin lysis -1 8478 8918
YP_009283346.1 NC_031042_p5 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism -1 2829 3347
YP_009283342.1 NC_031042_p1 HNH nuclease domain-containing protein phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism -1 364 750
YP_009283343.1 NC_031042_p2 hypothetical protein phrog_3972 unknown function unknown function -1 1210 1557
YP_009283445.1 NC_031042_p104 hypothetical protein phrog_4379 unknown function unknown function 1 89684 90028
YP_009283442.1 NC_031042_p101 hypothetical protein phrog_4263 unknown function unknown function 1 87932 88918
YP_009283489.1 NC_031042_p148 hypothetical protein singleton unknown function unknown function -1 110836 111003
YP_009283450.1 NC_031042_p109 hypothetical protein phrog_8583 unknown function unknown function -1 92678 93562
YP_009283485.1 NC_031042_p144 hypothetical protein phrog_2855 unknown function unknown function -1 109267 109548
YP_009283455.1 NC_031042_p114 hypothetical protein phrog_6933 unknown function unknown function -1 95393 95596
YP_009283375.1 NC_031042_p34 hypothetical protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 24644 25459
YP_009283383.1 NC_031042_p42 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 31444 31674
YP_009283480.1 NC_031042_p139 hypothetical protein phrog_5468 unknown function unknown function -1 107437 107781
YP_009283385.1 NC_031042_p44 hypothetical protein phrog_3696 unknown function unknown function 1 32207 32497
YP_009283413.1 NC_031042_p72 pore forming tail tip protein phrog_3779 tail length tape measure protein tail -1 62130 65810
YP_009283467.1 NC_031042_p126 hypothetical protein phrog_7354 major head protein head and packaging -1 100437 100682
YP_009283370.1 NC_031042_p29 phaosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 20389 21141
YP_009283478.1 NC_031042_p137 i-spanin phrog_739 Rz-like spanin lysis -1 106180 106605
YP_009283364.1 NC_031042_p23 tymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 14553 15392
YP_009283471.1 NC_031042_p130 hypothetical protein phrog_5944 unknown function unknown function -1 102080 102496
YP_009283481.1 NC_031042_p140 hypothetical protein phrog_5265 unknown function unknown function -1 107892 108176
YP_009283411.1 NC_031042_p70 tail protein phrog_31 central tail fiber J tail -1 58560 61409
YP_009283405.1 NC_031042_p64 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 49883 50329
YP_009283433.1 NC_031042_p92 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 81845 82621
YP_009283362.1 NC_031042_p21 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 13529 14071
YP_009283479.1 NC_031042_p138 hypothetical protein phrog_4243 unknown function unknown function -1 106602 107282
YP_009283483.1 NC_031042_p142 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 108466 108981
YP_009283389.1 NC_031042_p48 NDP-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 33749 34720
YP_009283382.1 NC_031042_p41 hypothetical protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 30747 31451
YP_009283396.1 NC_031042_p55 hypothetical protein phrog_4386 unknown function unknown function 1 42048 42545
YP_009283425.1 NC_031042_p84 hypothetical protein phrog_3497 unknown function unknown function -1 75289 75726
YP_009283381.1 NC_031042_p40 hypothetical protein phrog_5291 unknown function unknown function 1 30445 30678
YP_009283468.1 NC_031042_p127 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 100780 101070
YP_009283420.1 NC_031042_p79 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 70889 71461
YP_009283393.1 NC_031042_p52 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38005 38538
YP_009283395.1 NC_031042_p54 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 39488 42055
YP_009283400.1 NC_031042_p59 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45202 45732
YP_009283377.1 NC_031042_p36 hypothetical protein phrog_2502 unknown function unknown function 1 25955 26383
YP_009283347.1 NC_031042_p6 hypothetical protein phrog_8119 unknown function unknown function 1 3614 4600
YP_009283387.1 NC_031042_p46 ssDNA-binding transcriptional regulator phrog_4053 transcriptional regulator transcription regulation 1 33192 33503
YP_009283350.1 NC_031042_p9 hypothetical protein phrog_5032 unknown function unknown function -1 6388 6948
YP_009283366.1 NC_031042_p25 aerobic ribonucleoside diphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 15922 17067
YP_009283345.1 NC_031042_p4 hypothetical protein phrog_5153 unknown function unknown function -1 2251 2457
YP_009283428.1 NC_031042_p87 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 77878 78360
YP_009283461.1 NC_031042_p120 hypothetical protein phrog_4984 unknown function unknown function -1 97286 97567
YP_009283458.1 NC_031042_p117 hypothetical protein phrog_5967 unknown function unknown function -1 96428 96628
YP_009283431.1 NC_031042_p90 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover 1 80919 81143
YP_009283464.1 NC_031042_p123 hypothetical protein phrog_4979 unknown function unknown function -1 98451 98882
YP_009283463.1 NC_031042_p122 hypothetical protein phrog_3880 unknown function unknown function -1 98094 98372
YP_009283404.1 NC_031042_p63 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 49011 49886
YP_009283369.1 NC_031042_p28 hypothetical protein phrog_5357 tail length tape measure protein tail -1 20166 20387
YP_009283419.1 NC_031042_p78 hypothetical protein phrog_442 head-tail adaptor connector -1 70324 70836
YP_009283360.1 NC_031042_p19 hypothetical protein phrog_4593 unknown function unknown function -1 12700 12978
YP_009283446.1 NC_031042_p105 hypothetical protein singleton unknown function unknown function 1 90025 90288
YP_009283414.1 NC_031042_p73 hypothetical protein phrog_313 Tail assembly chaperone tail -1 66324 66728
YP_009283378.1 NC_031042_p37 hypothetical protein phrog_2502 unknown function unknown function 1 26393 26785
YP_009283372.1 NC_031042_p31 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 22127 23953
YP_009283449.1 NC_031042_p108 hypothetical protein singleton unknown function unknown function 1 92159 92446
YP_009283473.1 NC_031042_p132 holin phrog_860 holin lysis -1 102982 103638
YP_009283397.1 NC_031042_p56 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 42542 43894
YP_009283361.1 NC_031042_p20 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 13056 13532
YP_009283379.1 NC_031042_p38 hypothetical protein phrog_29527 unknown function unknown function 1 26778 26969
YP_009283371.1 NC_031042_p30 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism 1 21469 22140
YP_009283416.1 NC_031042_p75 tail protein phrog_3575 major tail protein tail -1 67629 69038
YP_009283484.1 NC_031042_p143 hypothetical protein phrog_4821 unknown function unknown function -1 108978 109274
YP_009283403.1 NC_031042_p62 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48529 49011
YP_009283407.1 NC_031042_p66 chaperone of endosialidase domain-containing protein phrog_12321 tail fiber protein tail -1 50596 52683
YP_009283488.1 NC_031042_p147 acetyltransferase-like protein phrog_1209 unknown function unknown function -1 110490 110858
YP_009283391.1 NC_031042_p50 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 35686 36453
YP_009283443.1 NC_031042_p102 hypothetical protein phrog_5145 unknown function unknown function 1 89037 89267
YP_009283409.1 NC_031042_p68 tail protein phrog_1084 unknown function unknown function -1 56076 56498
YP_009283477.1 NC_031042_p136 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 105501 106199
YP_009283472.1 NC_031042_p131 endolysin phrog_465 endolysin lysis -1 102572 102985
YP_009283435.1 NC_031042_p94 DNA transfer protein phrog_1745 DNA transfer protein other -1 83120 84784
YP_009283422.1 NC_031042_p81 prohead protease phrog_80 head maturation protease head and packaging -1 72945 73577
YP_009283426.1 NC_031042_p85 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 75716 76390
YP_009283459.1 NC_031042_p118 hypothetical protein phrog_4731 unknown function unknown function -1 96728 97054
YP_009283440.1 NC_031042_p99 hypothetical protein phrog_17446 unknown function unknown function -1 86429 86614
YP_009283437.1 NC_031042_p96 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 85136 85543
YP_009283441.1 NC_031042_p100 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 86840 87358
YP_009283421.1 NC_031042_p80 minor head protein precursor phrog_10 major head protein head and packaging -1 71551 72927
YP_009283487.1 NC_031042_p146 hypothetical protein phrog_4499 unknown function unknown function -1 110094 110408
YP_009283412.1 NC_031042_p71 hypothetical protein phrog_1302 distal tail protein tail -1 61406 62020
YP_009283399.1 NC_031042_p58 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 44392 45165
YP_009283460.1 NC_031042_p119 hypothetical protein phrog_4804 unknown function unknown function -1 97044 97289
YP_009283348.1 NC_031042_p7 hypothetical protein phrog_7894 unknown function unknown function 1 4622 5038
YP_009283401.1 NC_031042_p60 recombination endonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 45729 46706
YP_009283392.1 NC_031042_p51 replication DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 36485 38008
YP_009283390.1 NC_031042_p49 NDP-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 34923 35693
YP_009283380.1 NC_031042_p39 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 27672 30461
YP_009283436.1 NC_031042_p95 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 84881 85078
YP_009283462.1 NC_031042_p121 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 97564 98100
YP_009283427.1 NC_031042_p86 terminase large subunit phrog_2 terminase large subunit head and packaging -1 76562 77878
YP_009283376.1 NC_031042_p35 hypothetical protein phrog_1818 unknown function unknown function 1 25440 25952
YP_009283344.1 NC_031042_p3 hypothetical protein phrog_5473 unknown function unknown function -1 1668 1853
YP_009283358.1 NC_031042_p17 hypothetical protein phrog_4586 unknown function unknown function -1 11823 12059
YP_009283373.1 NC_031042_p32 hypothetical protein phrog_7953 unknown function unknown function 1 24053 24334
YP_009283356.1 NC_031042_p15 hypothetical protein phrog_1491 tail fiber protein tail -1 10149 10787
YP_009283486.1 NC_031042_p145 hypothetical protein phrog_5021 unknown function unknown function -1 109625 109972
YP_009283423.1 NC_031042_p82 tail protein phrog_2973 Hoc-like head decoration head and packaging -1 73581 74075
YP_009283415.1 NC_031042_p74 minor tail protein phrog_3889 base plate tail tube protein tail -1 66725 67624
YP_009283394.1 NC_031042_p53 DNA replication primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 38535 39425
YP_009283452.1 NC_031042_p111 hypothetical protein phrog_5799 unknown function unknown function -1 94256 94441
YP_009283454.1 NC_031042_p113 hypothetical protein phrog_9887 unknown function unknown function -1 94662 94952
YP_009283408.1 NC_031042_p67 chaperone of endosialidase domain-containing protein phrog_5481 tail fiber protein tail -1 52726 56076
YP_009283453.1 NC_031042_p112 hypothetical protein phrog_6021 unknown function unknown function -1 94441 94674
YP_009283417.1 NC_031042_p76 hypothetical protein phrog_3907 tail terminator connector -1 69065 69553
YP_009283439.1 NC_031042_p98 hypothetical protein phrog_4718 unknown function unknown function -1 86124 86327
YP_009283355.1 NC_031042_p14 hypothetical protein phrog_1479 unknown function unknown function -1 9389 9706
YP_009283349.1 NC_031042_p8 SPFH domain-containing protein phrog_200 lipoprotein other -1 5363 6313
YP_009283398.1 NC_031042_p57 hypothetical protein phrog_4258 unknown function unknown function 1 44115 44399
YP_009283429.1 NC_031042_p88 receptor binding protein phrog_4815 receptor binding tail protein tail -1 78371 80158
YP_009283474.1 NC_031042_p133 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 103811 104395
YP_009283469.1 NC_031042_p128 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 101067 101603
YP_009283456.1 NC_031042_p115 hypothetical protein phrog_4905 unknown function unknown function -1 95651 96022
YP_009283482.1 NC_031042_p141 hypothetical protein phrog_5792 unknown function unknown function -1 108173 108469
YP_009283434.1 NC_031042_p93 hypothetical protein phrog_4576 unknown function unknown function -1 82660 83052
YP_009283365.1 NC_031042_p24 dyhydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 15392 15925
YP_009283386.1 NC_031042_p45 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism 1 32545 33210