| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031046 |
Definition |
Staphylococcus phage BP39, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus BP39. |
DB of origin |
REFSEQ |
Length |
17641 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
20 |
%GC |
29.01 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009283980.1 | NC_031046_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1511 | 1690 |
| YP_009283981.1 | NC_031046_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1693 | 2094 |
| YP_009283977.1 | NC_031046_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 512 | 814 |
| YP_009283985.1 | NC_031046_p10 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6451 | 7890 |
| YP_009283976.1 | NC_031046_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 314 | 478 |
| YP_009283995.1 | NC_031046_p20 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 16977 | 17363 |
| YP_009283994.1 | NC_031046_p19 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 16782 | 16964 |
| YP_009283986.1 | NC_031046_p11 | holin | phrog_199 | holin | lysis | -1 | 7865 | 8287 |
| YP_009283987.1 | NC_031046_p12 | tail protein | phrog_2248 | tail protein | tail | -1 | 8288 | 10063 |
| YP_009283984.1 | NC_031046_p9 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4053 | 6341 |
| YP_009283978.1 | NC_031046_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 832 | 1068 |
| YP_009283982.1 | NC_031046_p7 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2260 | 2742 |
| YP_009283983.1 | NC_031046_p8 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 2790 | 4037 |
| YP_009283989.1 | NC_031046_p14 | N-acetylmuramoyl-L-alanine amidase | phrog_635 | endolysin | lysis | -1 | 11100 | 11861 |
| YP_009283990.1 | NC_031046_p15 | hypothetical protein | phrog_287 | minor tail protein | tail | -1 | 11877 | 13799 |
| YP_009283993.1 | NC_031046_p18 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 15554 | 16774 |
| YP_009283991.1 | NC_031046_p16 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 13812 | 14567 |
| YP_009283992.1 | NC_031046_p17 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 14560 | 15543 |
| YP_009283979.1 | NC_031046_p4 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1092 | 1460 |
| YP_009283988.1 | NC_031046_p13 | tail protein | phrog_9604 | tail protein | tail | -1 | 10108 | 11037 |