Genomic map of Bacillus phage PfEFR-5 (NC_031055)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031055
Definition
Bacillus phage PfEFR-5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
43773
Host Name
Bacillus cereus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
35.39
Number of singletons
10
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009285289.1 NC_031055_p45 hypothetical protein phrog_6838 unknown function unknown function 1 34987 35130
YP_009285285.1 NC_031055_p41 hypothetical protein phrog_4556 unknown function unknown function 1 33253 33426
YP_009285304.1 NC_031055_p60 hypothetical protein phrog_3928 unknown function unknown function 1 40432 40602
YP_009285307.1 NC_031055_p63 hypothetical protein singleton unknown function unknown function 1 41900 42016
YP_009285263.1 NC_031055_p19 minor structural protein phrog_1775 minor head protein head and packaging 1 16745 20758
YP_009285253.1 NC_031055_p9 major capsid protein phrog_10 major head protein head and packaging 1 6124 7311
YP_009285290.1 NC_031055_p46 hypothetical protein phrog_7384 unknown function unknown function 1 35105 35308
YP_009285246.1 NC_031055_p2 hypothetical protein phrog_2395 unknown function unknown function 1 996 1208
YP_009285281.1 NC_031055_p37 hypothetical protein phrog_3674 unknown function unknown function 1 31318 31494
YP_009285291.1 NC_031055_p47 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 35375 35821
YP_009285294.1 NC_031055_p50 hypothetical protein phrog_31034 unknown function unknown function 1 36459 36650
YP_009285293.1 NC_031055_p49 hypothetical protein singleton unknown function unknown function 1 36215 36427
YP_009285284.1 NC_031055_p40 hypothetical protein phrog_3407 unknown function unknown function 1 33033 33227
YP_009285257.1 NC_031055_p13 structural protein phrog_78 tail terminator connector 1 8628 8987
YP_009285262.1 NC_031055_p18 tail fiber protein phrog_202 distal tail protein Dit tail 1 15264 16748
YP_009285301.1 NC_031055_p57 chromosome segregation protein phrog_13662 unknown function unknown function 1 38882 39145
YP_009285249.1 NC_031055_p5 terminase small subunit phrog_83 terminase small subunit head and packaging 1 2031 2411
YP_009285270.1 NC_031055_p26 hypothetical protein singleton unknown function unknown function 1 25775 26167
YP_009285258.1 NC_031055_p14 major tail protein phrog_88 major tail protein tail 1 9001 9585
YP_009285273.1 NC_031055_p29 hypothetical protein phrog_2190 replication initiation protein DNA, RNA and nucleotide metabolism 1 27660 28313
YP_009285305.1 NC_031055_p61 transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 40626 41099
YP_009285282.1 NC_031055_p38 DNA replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 31499 32245
YP_009285261.1 NC_031055_p17 tail tape measure protein phrog_5218 unknown function unknown function 1 10215 15230
YP_009285276.1 NC_031055_p32 transcriptional regulator singleton unknown function unknown function -1 29206 29604
YP_009285295.1 NC_031055_p51 YopX protein phrog_98 unknown function unknown function 1 36680 37102
YP_009285296.1 NC_031055_p52 hypothetical protein phrog_14434 unknown function unknown function 1 37136 37297
YP_009285312.1 NC_031055_p68 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43370 43732
YP_009285300.1 NC_031055_p56 hypothetical protein phrog_12106 unknown function unknown function 1 38646 38843
YP_009285254.1 NC_031055_p10 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 7597 7872
YP_009285288.1 NC_031055_p44 RNA polymerase sigma subunit phrog_351 RNA polymerase sigma factor transcription regulation 1 34079 34978
YP_009285297.1 NC_031055_p53 hypothetical protein phrog_2487 unknown function unknown function 1 37482 37712
YP_009285306.1 NC_031055_p62 site-specific integrase phrog_216 integrase integration and excision 1 41096 41638
YP_009285268.1 NC_031055_p24 lysin phrog_3088 amidase lysis 1 24466 25221
YP_009285279.1 NC_031055_p35 hypothetical protein phrog_9848 unknown function unknown function 1 30846 31112
YP_009285248.1 NC_031055_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1507 1869
YP_009285271.1 NC_031055_p27 hypothetical protein phrog_6470 unknown function unknown function 1 26180 26506
YP_009285264.1 NC_031055_p20 hypothetical protein singleton unknown function unknown function 1 20781 21230
YP_009285256.1 NC_031055_p12 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 8194 8631
YP_009285292.1 NC_031055_p48 hypothetical protein singleton unknown function unknown function 1 36049 36198
YP_009285278.1 NC_031055_p34 antirepressor phrog_373 anti-repressor transcription regulation 1 30081 30812
YP_009285267.1 NC_031055_p23 holin phrog_199 holin lysis 1 24026 24466
YP_009285277.1 NC_031055_p33 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 29815 30015
YP_009285250.1 NC_031055_p6 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2389 4164
YP_009285265.1 NC_031055_p21 transposase phrog_2199 transposase integration and excision 1 21672 22814
YP_009285286.1 NC_031055_p42 hypothetical protein phrog_2521 unknown function unknown function 1 33441 33695
YP_009285311.1 NC_031055_p67 hypothetical protein phrog_21396 unknown function unknown function 1 43204 43377
YP_009285303.1 NC_031055_p59 hypothetical protein singleton unknown function unknown function 1 40157 40327
YP_009285251.1 NC_031055_p7 portal protein phrog_12 portal protein head and packaging 1 4441 5394
YP_009285255.1 NC_031055_p11 head-tail adaptor phrog_25 head closure Hc1 connector 1 7847 8206
YP_009285252.1 NC_031055_p8 Clp protease-like protein phrog_94 head maturation protease head and packaging 1 5405 6127
YP_009285308.1 NC_031055_p64 hypothetical protein phrog_7303 unknown function unknown function 1 42269 42451
YP_009285299.1 NC_031055_p55 hypothetical protein singleton unknown function unknown function 1 38335 38463
YP_009285275.1 NC_031055_p31 integrase singleton unknown function unknown function -1 28964 29209
YP_009285287.1 NC_031055_p43 hypothetical protein phrog_3356 transposase integration and excision 1 33708 33995
YP_009285302.1 NC_031055_p58 hypothetical protein phrog_15415 unknown function unknown function 1 39303 39518
YP_009285245.1 NC_031055_p1 hypothetical protein phrog_4705 unknown function unknown function 1 734 979
YP_009285298.1 NC_031055_p54 YopX protein phrog_98 unknown function unknown function 1 37750 38148
YP_009285310.1 NC_031055_p66 hypothetical protein phrog_2395 unknown function unknown function 1 42859 43071
YP_009285280.1 NC_031055_p36 hypothetical protein phrog_11686 unknown function unknown function 1 31125 31271
YP_009285266.1 NC_031055_p22 site-specific recombinase phrog_1 integrase integration and excision 1 23042 24010
YP_009285260.1 NC_031055_p16 hypothetical protein phrog_7255 unknown function unknown function 1 10038 10199
YP_009285247.1 NC_031055_p3 hypothetical protein phrog_21396 unknown function unknown function 1 1341 1514
YP_009285269.1 NC_031055_p25 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 25264 25470
YP_009285272.1 NC_031055_p28 cell division FtsK/SpoIIIE protein phrog_1358 FtsK/SpoIIIE-like protein moron, auxiliary metabolic gene and host takeover 1 26516 27673
YP_009285283.1 NC_031055_p39 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 32214 33017
YP_009285309.1 NC_031055_p65 hypothetical protein phrog_4705 unknown function unknown function 1 42498 42872
YP_009285274.1 NC_031055_p30 hypothetical protein singleton unknown function unknown function 1 28334 28555
YP_009285259.1 NC_031055_p15 hypothetical protein phrog_187 head-tail adaptor connector 1 9610 10041