| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031055 |
Definition |
Bacillus phage PfEFR-5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
43773 |
Host Name |
Bacillus cereus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
35.39 |
Number of singletons |
10 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009285289.1 | NC_031055_p45 | hypothetical protein | phrog_6838 | unknown function | unknown function | 1 | 34987 | 35130 |
| YP_009285285.1 | NC_031055_p41 | hypothetical protein | phrog_4556 | unknown function | unknown function | 1 | 33253 | 33426 |
| YP_009285304.1 | NC_031055_p60 | hypothetical protein | phrog_3928 | unknown function | unknown function | 1 | 40432 | 40602 |
| YP_009285307.1 | NC_031055_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41900 | 42016 |
| YP_009285263.1 | NC_031055_p19 | minor structural protein | phrog_1775 | minor head protein | head and packaging | 1 | 16745 | 20758 |
| YP_009285253.1 | NC_031055_p9 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6124 | 7311 |
| YP_009285290.1 | NC_031055_p46 | hypothetical protein | phrog_7384 | unknown function | unknown function | 1 | 35105 | 35308 |
| YP_009285246.1 | NC_031055_p2 | hypothetical protein | phrog_2395 | unknown function | unknown function | 1 | 996 | 1208 |
| YP_009285281.1 | NC_031055_p37 | hypothetical protein | phrog_3674 | unknown function | unknown function | 1 | 31318 | 31494 |
| YP_009285291.1 | NC_031055_p47 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 35375 | 35821 |
| YP_009285294.1 | NC_031055_p50 | hypothetical protein | phrog_31034 | unknown function | unknown function | 1 | 36459 | 36650 |
| YP_009285293.1 | NC_031055_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36215 | 36427 |
| YP_009285284.1 | NC_031055_p40 | hypothetical protein | phrog_3407 | unknown function | unknown function | 1 | 33033 | 33227 |
| YP_009285257.1 | NC_031055_p13 | structural protein | phrog_78 | tail terminator | connector | 1 | 8628 | 8987 |
| YP_009285262.1 | NC_031055_p18 | tail fiber protein | phrog_202 | distal tail protein Dit | tail | 1 | 15264 | 16748 |
| YP_009285301.1 | NC_031055_p57 | chromosome segregation protein | phrog_13662 | unknown function | unknown function | 1 | 38882 | 39145 |
| YP_009285249.1 | NC_031055_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 2031 | 2411 |
| YP_009285270.1 | NC_031055_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25775 | 26167 |
| YP_009285258.1 | NC_031055_p14 | major tail protein | phrog_88 | major tail protein | tail | 1 | 9001 | 9585 |
| YP_009285273.1 | NC_031055_p29 | hypothetical protein | phrog_2190 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 27660 | 28313 |
| YP_009285305.1 | NC_031055_p61 | transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 40626 | 41099 |
| YP_009285282.1 | NC_031055_p38 | DNA replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31499 | 32245 |
| YP_009285261.1 | NC_031055_p17 | tail tape measure protein | phrog_5218 | unknown function | unknown function | 1 | 10215 | 15230 |
| YP_009285276.1 | NC_031055_p32 | transcriptional regulator | singleton | unknown function | unknown function | -1 | 29206 | 29604 |
| YP_009285295.1 | NC_031055_p51 | YopX protein | phrog_98 | unknown function | unknown function | 1 | 36680 | 37102 |
| YP_009285296.1 | NC_031055_p52 | hypothetical protein | phrog_14434 | unknown function | unknown function | 1 | 37136 | 37297 |
| YP_009285312.1 | NC_031055_p68 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43370 | 43732 |
| YP_009285300.1 | NC_031055_p56 | hypothetical protein | phrog_12106 | unknown function | unknown function | 1 | 38646 | 38843 |
| YP_009285254.1 | NC_031055_p10 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 7597 | 7872 |
| YP_009285288.1 | NC_031055_p44 | RNA polymerase sigma subunit | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 34079 | 34978 |
| YP_009285297.1 | NC_031055_p53 | hypothetical protein | phrog_2487 | unknown function | unknown function | 1 | 37482 | 37712 |
| YP_009285306.1 | NC_031055_p62 | site-specific integrase | phrog_216 | integrase | integration and excision | 1 | 41096 | 41638 |
| YP_009285268.1 | NC_031055_p24 | lysin | phrog_3088 | amidase | lysis | 1 | 24466 | 25221 |
| YP_009285279.1 | NC_031055_p35 | hypothetical protein | phrog_9848 | unknown function | unknown function | 1 | 30846 | 31112 |
| YP_009285248.1 | NC_031055_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1507 | 1869 |
| YP_009285271.1 | NC_031055_p27 | hypothetical protein | phrog_6470 | unknown function | unknown function | 1 | 26180 | 26506 |
| YP_009285264.1 | NC_031055_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20781 | 21230 |
| YP_009285256.1 | NC_031055_p12 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8194 | 8631 |
| YP_009285292.1 | NC_031055_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36049 | 36198 |
| YP_009285278.1 | NC_031055_p34 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 30081 | 30812 |
| YP_009285267.1 | NC_031055_p23 | holin | phrog_199 | holin | lysis | 1 | 24026 | 24466 |
| YP_009285277.1 | NC_031055_p33 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29815 | 30015 |
| YP_009285250.1 | NC_031055_p6 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2389 | 4164 |
| YP_009285265.1 | NC_031055_p21 | transposase | phrog_2199 | transposase | integration and excision | 1 | 21672 | 22814 |
| YP_009285286.1 | NC_031055_p42 | hypothetical protein | phrog_2521 | unknown function | unknown function | 1 | 33441 | 33695 |
| YP_009285311.1 | NC_031055_p67 | hypothetical protein | phrog_21396 | unknown function | unknown function | 1 | 43204 | 43377 |
| YP_009285303.1 | NC_031055_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40157 | 40327 |
| YP_009285251.1 | NC_031055_p7 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4441 | 5394 |
| YP_009285255.1 | NC_031055_p11 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 7847 | 8206 |
| YP_009285252.1 | NC_031055_p8 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | 1 | 5405 | 6127 |
| YP_009285308.1 | NC_031055_p64 | hypothetical protein | phrog_7303 | unknown function | unknown function | 1 | 42269 | 42451 |
| YP_009285299.1 | NC_031055_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38335 | 38463 |
| YP_009285275.1 | NC_031055_p31 | integrase | singleton | unknown function | unknown function | -1 | 28964 | 29209 |
| YP_009285287.1 | NC_031055_p43 | hypothetical protein | phrog_3356 | transposase | integration and excision | 1 | 33708 | 33995 |
| YP_009285302.1 | NC_031055_p58 | hypothetical protein | phrog_15415 | unknown function | unknown function | 1 | 39303 | 39518 |
| YP_009285245.1 | NC_031055_p1 | hypothetical protein | phrog_4705 | unknown function | unknown function | 1 | 734 | 979 |
| YP_009285298.1 | NC_031055_p54 | YopX protein | phrog_98 | unknown function | unknown function | 1 | 37750 | 38148 |
| YP_009285310.1 | NC_031055_p66 | hypothetical protein | phrog_2395 | unknown function | unknown function | 1 | 42859 | 43071 |
| YP_009285280.1 | NC_031055_p36 | hypothetical protein | phrog_11686 | unknown function | unknown function | 1 | 31125 | 31271 |
| YP_009285266.1 | NC_031055_p22 | site-specific recombinase | phrog_1 | integrase | integration and excision | 1 | 23042 | 24010 |
| YP_009285260.1 | NC_031055_p16 | hypothetical protein | phrog_7255 | unknown function | unknown function | 1 | 10038 | 10199 |
| YP_009285247.1 | NC_031055_p3 | hypothetical protein | phrog_21396 | unknown function | unknown function | 1 | 1341 | 1514 |
| YP_009285269.1 | NC_031055_p25 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 25264 | 25470 |
| YP_009285272.1 | NC_031055_p28 | cell division FtsK/SpoIIIE protein | phrog_1358 | FtsK/SpoIIIE-like protein | moron, auxiliary metabolic gene and host takeover | 1 | 26516 | 27673 |
| YP_009285283.1 | NC_031055_p39 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32214 | 33017 |
| YP_009285309.1 | NC_031055_p65 | hypothetical protein | phrog_4705 | unknown function | unknown function | 1 | 42498 | 42872 |
| YP_009285274.1 | NC_031055_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28334 | 28555 |
| YP_009285259.1 | NC_031055_p15 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 9610 | 10041 |